Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGACGACCGGATTGAAGAAGAACAGGAAGAAGAGAGGTCACGTTTCCGCCGGTCACGGTCGTATCGGAAAGCACCGAAAGCATCCCGGAGGTCGTGGTAATGCCGGAGGTATGCACCACCACAGAATCATGTTCGATAAGTACCATCCTGGTTACTTCGGTAAGGTCGGTATGCGTTACTTTCACAAGCTGAGGAACAGGTTCCATTGCCCCATCGTCAACATCGACAAACTCTGGTCTATGGTTCCTGAAGATGTCAAGGAGAAGGCCAAAAAAGAAGGCAAGGCTCCAGTTATTGATGTCACTCAGTTTGGGTTCTTTAAGGTTCTTGGTAAGGGTGTTTTGCCTAATTCTCAGCCTGTTGTTGTTAAGGCTAAGTTGATTTCTAAGGTCGCTGAAAAGAAGATCAAGGAGAATGGTGGCGCTGTGCTTCTCACTGCCTAA ATGACGACCGGATTGAAGAAGAACAGGAAGAAGAGAGGTCACGTTTCCGCCGGTCACGGTCGTATCGGAAAGCACCGAAAGCATCCCGGAGGTCGTGGTAATGCCGGAGGTATGCACCACCACAGAATCATGTTCGATAAGTACCATCCTGGTTACTTCGGTAAGGTCGGTATGCGTTACTTTCACAAGCTGAGGAACAGGTTCCATTGCCCCATCGTCAACATCGACAAACTCTGGTCTATGGTTCCTGAAGATGTCAAGGAGAAGGCCAAAAAAGAAGGCAAGGCTCCAGTTATTGATGTCACTCAGTTTGGGTTCTTTAAGGTTCTTGGTAAGGGTGTTTTGCCTAATTCTCAGCCTGTTGTTGTTAAGGCTAAGTTGATTTCTAAGGTCGCTGAAAAGAAGATCAAGGAGAATGGTGGCGCTGTGCTTCTCACTGCCTAA ATGACGACCGGATTGAAGAAGAACAGGAAGAAGAGAGGTCACGTTTCCGCCGGTCACGGTCGTATCGGAAAGCACCGAAAGCATCCCGGAGGTCGTGGTAATGCCGGAGGTATGCACCACCACAGAATCATGTTCGATAAGTACCATCCTGGTTACTTCGGTAAGGTCGGTATGCGTTACTTTCACAAGCTGAGGAACAGGTTCCATTGCCCCATCGTCAACATCGACAAACTCTGGTCTATGGTTCCTGAAGATGTCAAGGAGAAGGCCAAAAAAGAAGGCAAGGCTCCAGTTATTGATGTCACTCAGTTTGGGTTCTTTAAGGTTCTTGGTAAGGGTGTTTTGCCTAATTCTCAGCCTGTTGTTGTTAAGGCTAAGTTGATTTCTAAGGTCGCTGAAAAGAAGATCAAGGAGAATGGTGGCGCTGTGCTTCTCACTGCCTAA MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRYFHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQPVVVKAKLISKVAEKKIKENGGAVLLTA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo17662.1 vs. NCBI nr
Match: gi|902223832|gb|KNA19605.1| (hypothetical protein SOVF_060020 [Spinacia oleracea]) HSP 1 Score: 299.3 bits (765), Expect = 3.700e-78 Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1
BLAST of Spo17662.1 vs. NCBI nr
Match: gi|902194244|gb|KNA12501.1| (hypothetical protein SOVF_125320 [Spinacia oleracea]) HSP 1 Score: 284.3 bits (726), Expect = 1.200e-73 Identity = 139/147 (94.56%), Postives = 143/147 (97.28%), Query Frame = 1
BLAST of Spo17662.1 vs. NCBI nr
Match: gi|731335708|ref|XP_010678859.1| (PREDICTED: 60S ribosomal protein L27a-3-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 278.9 bits (712), Expect = 5.200e-72 Identity = 132/147 (89.80%), Postives = 143/147 (97.28%), Query Frame = 1
BLAST of Spo17662.1 vs. NCBI nr
Match: gi|731342522|ref|XP_010682436.1| (PREDICTED: 60S ribosomal protein L27a-2-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 278.1 bits (710), Expect = 8.900e-72 Identity = 134/147 (91.16%), Postives = 142/147 (96.60%), Query Frame = 1
BLAST of Spo17662.1 vs. NCBI nr
Match: gi|1012100101|ref|XP_015957134.1| (PREDICTED: 60S ribosomal protein L27a-3 [Arachis duranensis]) HSP 1 Score: 273.9 bits (699), Expect = 1.700e-70 Identity = 132/147 (89.80%), Postives = 141/147 (95.92%), Query Frame = 1
BLAST of Spo17662.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RJF7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_060020 PE=3 SV=1) HSP 1 Score: 299.3 bits (765), Expect = 2.600e-78 Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1
BLAST of Spo17662.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R117_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_125320 PE=3 SV=1) HSP 1 Score: 284.3 bits (726), Expect = 8.600e-74 Identity = 139/147 (94.56%), Postives = 143/147 (97.28%), Query Frame = 1
BLAST of Spo17662.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F4H5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g118030 PE=3 SV=1) HSP 1 Score: 278.9 bits (712), Expect = 3.600e-72 Identity = 132/147 (89.80%), Postives = 143/147 (97.28%), Query Frame = 1
BLAST of Spo17662.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C2H6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g148200 PE=3 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 6.200e-72 Identity = 134/147 (91.16%), Postives = 142/147 (96.60%), Query Frame = 1
BLAST of Spo17662.1 vs. UniProtKB/TrEMBL
Match: M5WR88_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012969mg PE=3 SV=1) HSP 1 Score: 266.2 bits (679), Expect = 2.400e-68 Identity = 126/147 (85.71%), Postives = 140/147 (95.24%), Query Frame = 1
BLAST of Spo17662.1 vs. ExPASy Swiss-Prot
Match: R27A2_ARATH (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 7.300e-66 Identity = 123/147 (83.67%), Postives = 133/147 (90.48%), Query Frame = 1
BLAST of Spo17662.1 vs. ExPASy Swiss-Prot
Match: R27A3_ARATH (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2) HSP 1 Score: 250.4 bits (638), Expect = 1.200e-65 Identity = 123/147 (83.67%), Postives = 133/147 (90.48%), Query Frame = 1
BLAST of Spo17662.1 vs. ExPASy Swiss-Prot
Match: RL27A_DICDI (60S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a PE=3 SV=1) HSP 1 Score: 204.9 bits (520), Expect = 6.000e-52 Identity = 99/149 (66.44%), Postives = 123/149 (82.55%), Query Frame = 1
BLAST of Spo17662.1 vs. ExPASy Swiss-Prot
Match: RL27A_RAT (60S ribosomal protein L27a OS=Rattus norvegicus GN=Rpl27a PE=1 SV=3) HSP 1 Score: 195.3 bits (495), Expect = 4.700e-49 Identity = 99/149 (66.44%), Postives = 116/149 (77.85%), Query Frame = 1
BLAST of Spo17662.1 vs. ExPASy Swiss-Prot
Match: RL27A_BOVIN (60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3) HSP 1 Score: 195.3 bits (495), Expect = 4.700e-49 Identity = 99/149 (66.44%), Postives = 116/149 (77.85%), Query Frame = 1
BLAST of Spo17662.1 vs. TAIR (Arabidopsis)
Match: AT1G23290.1 (Ribosomal protein L18e/L15 superfamily protein) HSP 1 Score: 251.1 bits (640), Expect = 4.100e-67 Identity = 123/147 (83.67%), Postives = 133/147 (90.48%), Query Frame = 1
BLAST of Spo17662.1 vs. TAIR (Arabidopsis)
Match: AT1G70600.1 (Ribosomal protein L18e/L15 superfamily protein) HSP 1 Score: 250.4 bits (638), Expect = 7.000e-67 Identity = 123/147 (83.67%), Postives = 133/147 (90.48%), Query Frame = 1
BLAST of Spo17662.1 vs. TAIR (Arabidopsis)
Match: AT1G12960.1 (Ribosomal protein L18e/L15 superfamily protein) HSP 1 Score: 123.6 bits (309), Expect = 9.900e-29 Identity = 75/146 (51.37%), Postives = 82/146 (56.16%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo17662.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo17662.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo17662.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo17662.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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