Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCAATTCTTAGATATATATAGGAAGTTGATTTTACTCTTAAACCCTTGGCTTGTAAACAAACAACACCTCATCAAATTGAGAAATCCAAACAACTTAACACAACCTAGAGTACCTTTATCTCCTCCCTCTATAAATAGAGTCAAAAAATCTCTTTTTCTCCTCACTTACTTAAAAAAGCAATTGTATATCTCAAAAAAAAACCATAAAATAATTATTAAAAAAAATAAAGAAAAAATATAATTTTATATTTTAAAAAATGGAAGTGGAAAATATAGGAGAAATGAAGAAAATAGTGGTAGCAGTAGATGAGAGTGAAGAGAGCATGTATGCTTTATCATGGTGTCTAAACAATGTTGTTTCAGTTTCACATCAAAATTCAGTTTCTCCAACTCTTGTTCTTCTCTATGTCAAGCCCTCTCCTCCTGCTAATTACTCTGCTTTTGATGTTGCTGGTAATTAACCTATCTTTTCTCTATTTTTACGTGTATTGTAATTATTTAATACTCGTAAATTTGAACTTTTTACGTTTTATTTCTTATATTACCTCGATTAATACTCGTAAATTTGTACTTTCTACATTATAATTTCTTACGTTACCTTAATTAAGTCTGGGACAGAGGTAGTAATTAATATAGAACGAGTATGCTCTCTAGAGGCGTGCAAGTACTGTCGTAATTTAATTTAATTTAAATTAAATTAAATTTAAATTTAAATTAAATTTAAATTTAATCTTCAAAAATTAACTTAGTTGAAACACTTTTAATTTAAAATTTTAAAAATTTGTACTCCACTATATGTTAGTTCGGACCTAATGATCTAGTGGATGACTACAAGAGTATTCATATTTAGAACTAGTAATTGAAATGGTAAAAAAGTTTTTTTTTTAAAAAAGGGTTAAATTTCAATCAAGTATGCGATTTTTTAAATAAATACTTAATTTTGATTTAATTATCTTTTGTAAATGTCGTATGAGTTGAGTAATACTTAAATTAATAGATTTGATTTGCAGGGTACTTGTTTGGAAATGATGTAGTAGCAGATTTGGAAGATTACTCTAGGAAGCTTGTTGATTCAGTCATGTCTAAAGCCCAAGAAGTTTGTATGAAGTCCAACATCGATGTACAATTTCTCTGCATAATCACTTAATTAATTAATCTTCCTTATTTTTCTTGATTATTGATTAAATTAGTCATATTTGATTGACAATTTTACAATTTAATTAATGTTGTTTTCCTCTATTTTTATTAATAATCAGATTAAGGTAGAAAAGAAAGTTGGAAGTGGAGATGCCAAAAATGTGATTTGTGGGACAGTTGAAAAATTAGGGGCTGACATGCTAGTTATGGGAAGCCATGGTTATGGATTTTTAAAGAGGTACTTTAATTTGTAATAATAATAATGATTTAATGATGAAATACTTTAATTTGTAAATTATGATACTCTTTTAATTTAATTTTTAAAGTATATTTATAGTATTATGAAAATTTTGTGATTGCAGGACTCTTCTGGGAAGCGTAAGTTATGACTGTGCGAAACGAGTAAAGTGTCCCATGGTAGTTGTGAAGCATCCAAGGAACGTTTTATGAATTCTCCGATCCTCGTTTTTTCGATATTTTAAGTTGTTTAAAGATCTTTTTCACAACTAGAATGTTACACACCCCACCTTTAATTACGAACTTGTAGAATAGTGTATTAATGATGATGTAGTTTTGAATTTTTGATCGGACAAGCAAATGTTGTACTAGTACATTTTACATGTACATATAGTTGTATGTGTTGTCTCTTTGGACGAAATTTTCACCGATCAAAGTTCAATTATATTTTTGACTTTTGGGTAGTATTTACACTATTTTGGAATGAAATGAATAGTATAGGAATAAAGCAAGATATTTATTTTGTTCCTACTCTCTCACTTGACTCCTTGTTCTTGACTTTTTTCAATCTAAAAACTAAAAAGTTTCGAAAAAAGAAAAAAAAAAGTTTCATCGACAAACGTACTAACACTAATATACTCGAATTTTAATAATTTAAACTTATTAACGTGTATTATTTGAATTTTTTTGAACTTACAATAACTATGAATTGAACCAAAC TTCAATTCTTAGATATATATAGGAAGTTGATTTTACTCTTAAACCCTTGGCTTGTAAACAAACAACACCTCATCAAATTGAGAAATCCAAACAACTTAACACAACCTAGAGTACCTTTATCTCCTCCCTCTATAAATAGAGTCAAAAAATCTCTTTTTCTCCTCACTTACTTAAAAAAGCAATTGTATATCTCAAAAAAAAACCATAAAATAATTATTAAAAAAAATAAAGAAAAAATATAATTTTATATTTTAAAAAATGGAAGTGGAAAATATAGGAGAAATGAAGAAAATAGTGGTAGCAGTAGATGAGAGTGAAGAGAGCATGTATGCTTTATCATGGTGTCTAAACAATGTTGTTTCAGTTTCACATCAAAATTCAGTTTCTCCAACTCTTGTTCTTCTCTATGTCAAGCCCTCTCCTCCTGCTAATTACTCTGCTTTTGATGTTGCTGGGTACTTGTTTGGAAATGATGTAGTAGCAGATTTGGAAGATTACTCTAGGAAGCTTGTTGATTCAGTCATGTCTAAAGCCCAAGAAATTAAGGTAGAAAAGAAAGTTGGAAGTGGAGATGCCAAAAATGTGATTTGTGGGACAGTTGAAAAATTAGGGGCTGACATGCTAGTTATGGGAAGCCATGGTTATGGATTTTTAAAGAGGACTCTTCTGGGAAGCGTAAGTTATGACTGTGCGAAACGAGTAAAGTGTCCCATGGTAGTTGTGAAGCATCCAAGGAACGTTTTATGAATTCTCCGATCCTCGTTTTTTCGATATTTTAAGTTGTTTAAAGATCTTTTTCACAACTAGAATGTTACACACCCCACCTTTAATTACGAACTTGTAGAATAGTGTATTAATGATGATGTAGTTTTGAATTTTTGATCGGACAAGCAAATGTTGTACTAGTACATTTTACATGTACATATAGTTGTATGTGTTGTCTCTTTGGACGAAATTTTCACCGATCAAAGTTCAATTATATTTTTGACTTTTGGGTAGTATTTACACTATTTTGGAATGAAATGAATAGTATAGGAATAAAGCAAGATATTTATTTTGTTCCTACTCTCTCACTTGACTCCTTGTTCTTGACTTTTTTCAATCTAAAAACTAAAAAGTTTCGAAAAAAGAAAAAAAAAAGTTTCATCGACAAACGTACTAACACTAATATACTCGAATTTTAATAATTTAAACTTATTAACGTGTATTATTTGAATTTTTTTGAACTTACAATAACTATGAATTGAACCAAAC ATGGAAGTGGAAAATATAGGAGAAATGAAGAAAATAGTGGTAGCAGTAGATGAGAGTGAAGAGAGCATGTATGCTTTATCATGGTGTCTAAACAATGTTGTTTCAGTTTCACATCAAAATTCAGTTTCTCCAACTCTTGTTCTTCTCTATGTCAAGCCCTCTCCTCCTGCTAATTACTCTGCTTTTGATGTTGCTGGGTACTTGTTTGGAAATGATGTAGTAGCAGATTTGGAAGATTACTCTAGGAAGCTTGTTGATTCAGTCATGTCTAAAGCCCAAGAAATTAAGGTAGAAAAGAAAGTTGGAAGTGGAGATGCCAAAAATGTGATTTGTGGGACAGTTGAAAAATTAGGGGCTGACATGCTAGTTATGGGAAGCCATGGTTATGGATTTTTAAAGAGGACTCTTCTGGGAAGCGTAAGTTATGACTGTGCGAAACGAGTAAAGTGTCCCATGGTAGTTGTGAAGCATCCAAGGAACGTTTTATGA MEVENIGEMKKIVVAVDESEESMYALSWCLNNVVSVSHQNSVSPTLVLLYVKPSPPANYSAFDVAGYLFGNDVVADLEDYSRKLVDSVMSKAQEIKVEKKVGSGDAKNVICGTVEKLGADMLVMGSHGYGFLKRTLLGSVSYDCAKRVKCPMVVVKHPRNVL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo17621.1 vs. NCBI nr
Match: gi|731336631|ref|XP_010679364.1| (PREDICTED: uncharacterized protein LOC104894755 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 240.4 bits (612), Expect = 2.300e-60 Identity = 125/163 (76.69%), Postives = 142/163 (87.12%), Query Frame = 1
BLAST of Spo17621.1 vs. NCBI nr
Match: gi|870858443|gb|KMT09952.1| (hypothetical protein BVRB_5g121680 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 235.3 bits (599), Expect = 7.300e-59 Identity = 121/157 (77.07%), Postives = 138/157 (87.90%), Query Frame = 1
BLAST of Spo17621.1 vs. NCBI nr
Match: gi|225437541|ref|XP_002275863.1| (PREDICTED: universal stress protein A-like protein [Vitis vinifera]) HSP 1 Score: 199.9 bits (507), Expect = 3.400e-48 Identity = 107/167 (64.07%), Postives = 125/167 (74.85%), Query Frame = 1
BLAST of Spo17621.1 vs. NCBI nr
Match: gi|147811185|emb|CAN63475.1| (hypothetical protein VITISV_016798 [Vitis vinifera]) HSP 1 Score: 198.7 bits (504), Expect = 7.600e-48 Identity = 107/167 (64.07%), Postives = 124/167 (74.25%), Query Frame = 1
BLAST of Spo17621.1 vs. NCBI nr
Match: gi|590719550|ref|XP_007051086.1| (Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]) HSP 1 Score: 193.4 bits (490), Expect = 3.200e-46 Identity = 107/170 (62.94%), Postives = 125/170 (73.53%), Query Frame = 1
BLAST of Spo17621.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C8M4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g121680 PE=4 SV=1) HSP 1 Score: 235.3 bits (599), Expect = 5.100e-59 Identity = 121/157 (77.07%), Postives = 138/157 (87.90%), Query Frame = 1
BLAST of Spo17621.1 vs. UniProtKB/TrEMBL
Match: A5BGX7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016798 PE=4 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 5.300e-48 Identity = 107/167 (64.07%), Postives = 124/167 (74.25%), Query Frame = 1
BLAST of Spo17621.1 vs. UniProtKB/TrEMBL
Match: A0A061DZ25_THECC (Adenine nucleotide alpha hydrolases-like superfamily protein OS=Theobroma cacao GN=TCM_004792 PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 2.200e-46 Identity = 107/170 (62.94%), Postives = 125/170 (73.53%), Query Frame = 1
BLAST of Spo17621.1 vs. UniProtKB/TrEMBL
Match: A0A067JWC8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14017 PE=4 SV=1) HSP 1 Score: 191.8 bits (486), Expect = 6.400e-46 Identity = 103/165 (62.42%), Postives = 128/165 (77.58%), Query Frame = 1
BLAST of Spo17621.1 vs. UniProtKB/TrEMBL
Match: B9RNF7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1347390 PE=4 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 4.200e-45 Identity = 104/166 (62.65%), Postives = 126/166 (75.90%), Query Frame = 1
BLAST of Spo17621.1 vs. ExPASy Swiss-Prot
Match: PHO32_ARATH (Universal stress protein PHOS32 OS=Arabidopsis thaliana GN=PHOS32 PE=1 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 4.500e-8 Identity = 49/167 (29.34%), Postives = 78/167 (46.71%), Query Frame = 1
BLAST of Spo17621.1 vs. ExPASy Swiss-Prot
Match: USPAL_ARATH (Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2) HSP 1 Score: 59.3 bits (142), Expect = 4.500e-8 Identity = 50/170 (29.41%), Postives = 82/170 (48.24%), Query Frame = 1
BLAST of Spo17621.1 vs. ExPASy Swiss-Prot
Match: PHO34_ARATH (Universal stress protein PHOS34 OS=Arabidopsis thaliana GN=PHOS34 PE=1 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.300e-7 Identity = 55/173 (31.79%), Postives = 76/173 (43.93%), Query Frame = 1
BLAST of Spo17621.1 vs. TAIR (Arabidopsis)
Match: AT3G62550.1 (Adenine nucleotide alpha hydrolases-like superfamily protein) HSP 1 Score: 158.3 bits (399), Expect = 4.000e-39 Identity = 87/155 (56.13%), Postives = 109/155 (70.32%), Query Frame = 1
BLAST of Spo17621.1 vs. TAIR (Arabidopsis)
Match: AT1G09740.1 (Adenine nucleotide alpha hydrolases-like superfamily protein) HSP 1 Score: 95.5 bits (236), Expect = 3.200e-20 Identity = 65/162 (40.12%), Postives = 90/162 (55.56%), Query Frame = 1
BLAST of Spo17621.1 vs. TAIR (Arabidopsis)
Match: AT2G47710.1 (Adenine nucleotide alpha hydrolases-like superfamily protein) HSP 1 Score: 84.3 bits (207), Expect = 7.300e-17 Identity = 57/154 (37.01%), Postives = 85/154 (55.19%), Query Frame = 1
BLAST of Spo17621.1 vs. TAIR (Arabidopsis)
Match: AT3G58450.1 (Adenine nucleotide alpha hydrolases-like superfamily protein) HSP 1 Score: 82.8 bits (203), Expect = 2.100e-16 Identity = 55/161 (34.16%), Postives = 88/161 (54.66%), Query Frame = 1
BLAST of Spo17621.1 vs. TAIR (Arabidopsis)
Match: AT1G68300.1 (Adenine nucleotide alpha hydrolases-like superfamily protein) HSP 1 Score: 79.0 bits (193), Expect = 3.100e-15 Identity = 56/163 (34.36%), Postives = 87/163 (53.37%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo17621.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo17621.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo17621.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 3
BLAST of Spo17621.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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