Spo17216 (gene)

Overview
NameSpo17216
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionU1 small nuclear ribonucleoprotein C (U1 snRNP C) (U1-C) (U1C)
LocationSpoScf_01786 : 4056 .. 10553 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAGGTAAAGGTACTTAGCTGTTCTTATATTCCCCTGTTGAACTTTTTGTCTTAAGATTGACTGTTTTTCTTTTTTGGGCAGGTATTACTGCGACTACTGCGACACATACTTGACACATGATTCTGTAAGTATATGTCTCATCAAAGATGTAATCTTCTGCATTCTTTAAGTTTGATATATGTGTTTAGTATGCGGGTTGGTGGCTTTGAATAGAAAATTTAATAATATCAGTCATCCTGGAAATTTTTGGTTGCTTTGTCAAGTTTTAAAGACTTCTTCACAATTGAATACGATGCAAGTAAAGGAGTCTTCTAGAATATTTACTAAGTCTTTCACTCATAAAATTGGATTCGCGTGTTTGGTTCATGTTATATTGAGCGATGAATTTACCTTATTCTTTGGGAGAGGAAATATCAGAAACACGAGTTCATTTGTTGGCAAAAATTAGAGAGAATTGTTGTATCAACCTTGTATTTTTATGCGATTCATCTGGCTATTCGTGCATTTTATTTTTCTAGATTTGATTCTCTAATAGTTTGTTTGATCGACTTCTTGTGTTTTCTGTCAGCCATCTGTCAGGAAGCAACATAATGCGGGTTATAAACATAAGGTAAGCTAGCCTTGCCTCAGTAGGCAGTGGGAAGAATTACTGTATATTCCAAAATGTATATCAGTTTGCACAAAAGTCAAAAGAGATTAACCTCTGTTGTTTATTACCTCCTACTAATTATTAGTGACGGTTCTTTATTTTTGATTTCAGGCAAATGTGCGGATTTACTACCAGCAATTTGAGGAGCAACAGACGCAAAGTTTGATTGATCAGAGAATCAAGGAGCATCTTAGTGGCCAAGGTGCATTTCAAATTGGTGCTGCCTATGCAGCCTGGAGACCTGGTGTTAGGCCTCCTCTTCTTCCTGCACCTTTGCCGATTCCAGGTTCCCTTCCTTCGAATGCTCAAATGCCTCCAGGGATCAGGCTACCTGTTTTTCCTAGACCTCCTGGTTTTCCAGGTAACTTGATGCTTTCAAGCTATAACATTTGCTTATGTGAATTTATCTTACGGCTTTCAACAGGTCTTCTAAAAATCAATAGATTGCATGTTTTCTTGATAGAATTCTTATTATAAGATAGTCACATGACCTTAGTATACGTAAATAATTAATCGCCTTTAAAAAATGCATTCACACCACTGCTGAGATCTCAGGATATGTAGATAGACGATTTCAAACAGTTGACATAAGATATTAAAAAATTGCAGGAACAAAGAACCATATATATATATATATATGGACAGAGGGAAAGGATCTCTTTTCCTTTCTTGGATTAAAAGTAGGCCTTTTACCCCTTGATGGTTGGCCGGTTGGCCCTAATAGAGCCATAACGGAATATGTTCTTAGTTATGGGCTTTAGCCGCTTTACATTATATTTACATCACCTACAGTTTGTAGCTTTATATCTGTAACTTTTGCTTTTGAAGCCTTGAAGGGGAGCTTCTTTGTTATCTCGTTGCCATGCTGACTTTATTTGATTGATCAGACTACATAAGTGTTTGACTTGGTATACTTTAAATTATTTTTAGCTTTAAACTTGAATGTAAAATGTTATAGCACTTCTTGTTAATTAGGTTGCTGAAAAATGAAGCAAACACGTATAACATATGCATACGGCTACTCATTGACAGTCCCTTATCGAAGTTAGTTTTTGTGGAAAACTTCATACCCCTGGATTGTATTGACCTTTTTCTTATAGAAAGAAATGCTTTTCACATCTTAAACCGGTCGTGGTTGGGAGGAGGAAAGGTTTTTTTTTTTTAAGGATATTTTTTTGAACAAATCTAGGCTGGTCAGGGGCTGTAACTCAGGGGATTTGAATTTAGAGGTGAATCCCTTATCATATACAGCTGCCTCGATTGGAACTTGCCCTTTGGGATTCGAAAATCATTGTCAGAAAAATAGACCCAATGCTGTGAAAAATCATTTGTTGAATTAGATTCCTCAATTGTCTTTTATAACATTCTATCATAAATAGTTCTCATTTCCATATAATAAGCTAGACAACTAGTATCAAGAAAGCGAGTGCTGTTTGGTTTATGACAACGTAAGGTCTTATTGTGTAGGATTATTGAGGATAGAAGTGTCCTTTTGGTGAATTATTCAATTTTGGATCTAATATGAAGTGTCAAAGTCTCTTATCGTATTTGGATTTGGATGCTTGGCATTGCAATTAATGATCTAGCATCCAGAGGCATGGAGGTAAGCTTGGATTGAAGGAAACTTATGGCTTTTGCTGATGTCTTAATGAAAAGTGAAAGCATTTAAGATGGCTTCTGTAGATGAAAATAGAGCTAGATATATTGTGTTCACCAGCGCCGGGGCTACGATGACATCATGATTAGGGGGTCATGTGCAATTTCTCAAAATGAAGCTCTTATTCAACTAAAAAAAGGACTTGTTAAGTATTGAACCCATAACCTCGAGTATTACATATTTACACAACAATACCCCAGTAAATATGTAATACTCGAGGTATAAAGTGAGGGATAAAGTTTTAGGTTGTAATTGAGGAAAATGAAAATTTGAGGTTGTAACCCGTAAAGTGGGAAGCTTTAGGGTTGTATTTGGCAAAATTTCCAAAAAGTTTAAACAAGCCAACTCTTAGCAATAATTAAATGCTTGTTTTCCCACAAATAAGTGTCAATGCCAACACTCTTTTTTATTTGGGTTCCAGCTTTATTTCAACGTGCCTTCATTGGGAAAGAGTAGTGGCGTTGACACTTCTTGTGGGACAACTGTCCATGCTCATACTCTTATTTCGGTGGAAATAAGAGTAACAAGCAGACTCTTAGCAATAAGTTGAAACAAGAAGACTCTTAGCATTAACTAAGCTAGTTGTGGGACAACTGTCAGCTACCATCTTTACTTTGGAAAGGAATTAAAAATTATAAAGTGGGCTGTTGACATTGGGATGGGATTCATTTTTTAATTTTAATTTTACTTTTAACTTTGACATTCTTTTTTACATCTGATCCCACTGTTTTCTATTGGGAAAAGAGATCATCACTTGATTGGCTGTGGGAATTTATTTTTACACAACCAGAAATTTTTATCTTACCAGTGTCATCTTTCAAAACAGCAAAACTACTTTGCTTTTAAAGATTTTTTATTATCACACAAAAAATTATTCTACCTCTCGTTGTCGTCCCGACGTCCCGTTATCGCTTTTGGGTCAATTGGAAACAATCTCTCTGTAATTGCAGGGGTAAGGTTGCGTACACCCGACCCCCCCTTACCCCGCTTCTTGCGGGAGCCTCTTTGAGGCAATGGGGTAATGATAATGAATGATAATGATGACAAAAAATTATTCCACGTTATAAATATTCATAATAATAGAATAAATATTTTTTTAATGGTTCCTGTGTCCCCGAGTTTATATCGAATAACTTCCAAACCGTACCCCAGTCGTACACCCATACGGCCATACCCGAGTATGAGCATCCTAGGTTCAGACAATAGGAGTTGGTAAGCAATGGAAAATATCAAAAGAGCGAAGATGGTGGGTGGCGTGTGTCTTGTTGAGATTTTTCCGCCCTTCACAATTAGGGTTTGGTGGCTTAATAGAAAAAGGTGATTCACTTTAGGAACTTTACATTTACTTTCTAGAAGTAAATGTGGATTGTGGATATTCGTTTGAAATGATCTGGTTTGAGTTTGTCTGGAGCTGGACTATGGTTTACCCTAGAAATGTAAGTGGACCAGGGTACTGTTAAATGGAAAAGAAGAATGAAGGAGGGAGAAACTTCGGGCAGGAAATCAAGCTGCATGTTAGAACTCCGGGGTTGTAAAAAATGTGTGGATGATTTTGTAGGATATATTTACTAGTACATTTTATGTAAGTGAAACCCCCTTAGTCAAACCTCGTCCTTGGAAACAAACAATCATAAATGACAGCGTGTGGAATTTGTATTGGGAAAGACAGAGGGAAGAATACCTGTGGGCCAGTTCAGGCTGGAAATTCTAACATTATGTTATATACAGTACTTGTTTGACTAATAATACAGAATTTGCTTTTTGTTCTCTTCAAATAAGTTTATCTGAAGGAACGTATCGTCATATGCTTGTGCTGTCCCTGTTCGCAATGTTTCTAAGGCAAAATGATAATAAGTTTTGACGAAAGACGATGTTTATCTAATGAAGTAGCTATTTTAACAAGATATTCTTCTGTAATTTTGATACTAGCTATTGCTGTATTAAGGTACTGCAGCTTGAGCAGATTAACATGATTGATTTAAACCTTTTATTATTGATGCAGCAGGAATTTTGATCAACTAAAATCTGGCTTCTAATTTTGCATATTATTTGTTGTGCATCCTTTAAAATGATGATTCAAGTCAATATATATTTTAGCTATGTTAACAAAAGAATATTTATCTTAGTATTCTGGTGTCTTTGTCTCATTACAGTTGAGGAAGCATTGTATTGTTGCACTTTTAGCTAATTAACAGTTCTAAATCCTTTACAGTTTATGGGGCACCTCCAGGACTAGTTGCAGGACAACCAGGTGCTCCTGGTGCACCTGTGCAAGCAAATGGTCTGCCTGGGCCTCCTCCTTTGACTACCTCAACATCAGTACCAGGGGCGACACCTCCTGTTACTAATGGTGGTGCTCCAACTGTATCACAGCCTGGGTTCCAGGGTGCTCCTGCAGGCGGGAGCTTTGGTGGGACAAACATGCCTGCAGTCCCTAGCTTCCCTTCTGCAGGTGGAAACGTTTCTTACCCTGCAACATCAGGTGCTGATGGATTTACGTATGCTCAAGCCCCAAACAGCAGTCTTCAGTCTAACTAAAATGGTATGTCTCTGAATTACATTGCTATCTGCCCATCTTGCATTCTGATATACTTTGTGTTGGTTTGCCTTTTTTTTTTATTAGGATACATCTTACTATTTTCCTATTGTGTCTTACTAAGTAATGTAGTTAACTAGCTTAAATCCCATGCAACACGTCGGTGGTACTAATTTTTATTTTTTATTTTTAGTTCCGCTTTAATTTATCGATTTTTCACGAAATACCCCCGAGGTTTAACTTAATTGACCATATAACCTCGTGTTTCCAATAATTCACCATATACCCTCGAGGTTTGGAAAATTAACATGTCGTGACCTTGCCTTTAACTTTCCGTTAGTTCTCTCGGTTTTTTTCATCTTCAGTTCGTTTCTCCCCCATCTTCACCTCTCCTCCTTCACCATCTCTCTCCATGTTATGTTTAATTTTGAAACTGATTTAGTTAAAGATCAAAAACTACAAACTTCTCTTCCACACGAAATGAATTTCTAATGTCAAGTTTACATTACCAAATTCCTTTTTTATTTTTATTTCTCTGTTCTTCGATCAGCACCTCCCGACACCACCACCTGTGGCTGCTCACTCCCTCCGCAAGAGCAGTCCAAAAACCACCAGCAAACACCATCTTCACCCTTCACCACTCCCACTTTCTGTCATCAATTATTGGAATTAGTAGAAACCCAAACAAAACTTCAAATTACCACTTGATGTTTCTCTCTTCGCACCTTGATTTTCTTTGTCGGTTGGAGACTCGACGTCACCACCAGCAAACGCAATGATAACAAGAATCGTTTCATTTATGCCACCTTCGTTGCCATCGTCGCCTCGGGCTTATTACCGTAAAGCTTTTGTCGATTCAGGTTTTCGGAAGAACACCGTTTTCATCAACAACAACAACTCGTTGTCTGTGTGGTCATTGAAGTTGCCTGCTATTTTTGTATTTGGAGATTCTAGTGTCGATTGTAGGGAGAATTCTCGGTTTTATCCCCTTCTTCACCGTAATAAGTATGGAGTAGTTGATTACTTGTTCAAAGGATTCTAAATCCACTATCATCCTCCCTCACTTTCTCGGTACTTTTTTCTCCTACTTCAACCTATGTTTTGGTTTCTGGATTATTTTGGGGTTTTTGTTGATTTCGTAGAAACTACTCCCTCGTTCTCTTATGTTCTTCCCGGTTGGAATCGAGGAGGGTATTAAGAAAAATAGAATCTTGGTATGATTGAGCGTAAGAGTAATGATTAAAGTTAGAAGATTCTACTTATAAAATAAATGAAAGAGAGAGAAATGAATAAAGAAATAAAGGAAGGGGAAATATTTTATTAAAAATCATAAATAAGGTGGGTGAATGAATTGGGAAGTGTGAATGAATTAAATAAGATGGGTGTGGAAATCAATGGGAATAATTGGGTAGGTGGGTGGAATAAAGGTAGGATATAGTAGGAAATTAAATTGTAGAATGAGGGTATTTTGGGGGGAAAAAATTGCCATAAAAGGAAAAGATTTACAATAGGAAGAACAAAAAGGAACGTCAATTCGGGAAACGGGAAGAACATTTAGGAATGGAGAGAGTATAAGTATTACTATTAATCGTAATTGACTTCAATTTAATGCAATAAAATCATATTAAGCTCAACAATTGAGAATATTAAG

mRNA sequence

ATGCCCAGGTATTACTGCGACTACTGCGACACATACTTGACACATGATTCTCCATCTGTCAGGAAGCAACATAATGCGGGTTATAAACATAAGGCAAATGTGCGGATTTACTACCAGCAATTTGAGGAGCAACAGACGCAAAGTTTGATTGATCAGAGAATCAAGGAGCATCTTAGTGGCCAAGGTGCATTTCAAATTGGTGCTGCCTATGCAGCCTGGAGACCTGGTGTTAGGCCTCCTCTTCTTCCTGCACCTTTGCCGATTCCAGGTTCCCTTCCTTCGAATGCTCAAATGCCTCCAGGGATCAGGCTACCTGTTTTTCCTAGACCTCCTGGTTTTCCAGTTTATGGGGCACCTCCAGGACTAGTTGCAGGACAACCAGGTGCTCCTGGTGCACCTGTGCAAGCAAATGGTCTGCCTGGGCCTCCTCCTTTGACTACCTCAACATCAGTACCAGGGGCGACACCTCCTGTTACTAATGGTGGTGCTCCAACTGTATCACAGCCTGGGTTCCAGGGTGCTCCTGCAGGCGGGAGCTTTGGTGGGACAAACATGCCTGCAGTCCCTAGCTTCCCTTCTGCAGGTGGAAACGTTTCTTACCCTGCAACATCAGGTGCTGATGGATTTACGTATGCTCAAGCCCCAAACAGCAGTCTTCAGTCTAACTAAAATGGTATGTCTCTGAATTACATTGCTATCTGCCCATCTTGCATTCTGATATACTTTGTGTTGGTTTGCCTTTTTTTTTTATTAGGATACATCTTACTATTTTCCTATTGTGTCTTACTAAGTAATGTAGTTAACTAGCTTAAATCCCATGCAACACGTCGGTGGTACTAATTTTTATTTTTTATTTTTAGTTCCGCTTTAATTTATCGATTTTTCACGAAATACCCCCGAGGTTTAACTTAATTGACCATATAACCTCGTGTTTCCAATAATTCACCATATACCCTCGAGGTTTGGAAAATTAACATGTCGTGACCTTGCCTTTAACTTTCCGTTAGTTCTCTCGGTTTTTTTCATCTTCAGTTCGTTTCTCCCCCATCTTCACCTCTCCTCCTTCACCATCTCTCTCCATGTTATGTTTAATTTTGAAACTGATTTAGTTAAAGATCAAAAACTACAAACTTCTCTTCCACACGAAATGAATTTCTAATGTCAAGTTTACATTACCAAATTCCTTTTTTATTTTTATTTCTCTGTTCTTCGATCAGCACCTCCCGACACCACCACCTGTGGCTGCTCACTCCCTCCGCAAGAGCAGTCCAAAAACCACCAGCAAACACCATCTTCACCCTTCACCACTCCCACTTTCTGTCATCAATTATTGGAATTAGTAGAAACCCAAACAAAACTTCAAATTACCACTTGATGTTTCTCTCTTCGCACCTTGATTTTCTTTGTCGGTTGGAGACTCGACGTCACCACCAGCAAACGCAATGATAACAAGAATCGTTTCATTTATGCCACCTTCGTTGCCATCGTCGCCTCGGGCTTATTACCGTAAAGCTTTTGTCGATTCAGGTTTTCGGAAGAACACCGTTTTCATCAACAACAACAACTCGTTGTCTGTGTGGTCATTGAAGTTGCCTGCTATTTTTGTATTTGGAGATTCTAGTGTCGATTGTAGGGAGAATTCTCGGTTTTATCCCCTTCTTCACCGTAATAAGTATGGAGTAGTTGATTACTTGTTCAAAGGATTCTAAATCCACTATCATCCTCCCTCACTTTCTCGGTACTTTTTTCTCCTACTTCAACCTATGTTTTGGTTTCTGGATTATTTTGGGGTTTTTGTTGATTTCGTAGAAACTACTCCCTCGTTCTCTTATGTTCTTCCCGGTTGGAATCGAGGAGGGTATTAAGAAAAATAGAATCTTGGTATGATTGAGCGTAAGAGTAATGATTAAAGTTAGAAGATTCTACTTATAAAATAAATGAAAGAGAGAGAAATGAATAAAGAAATAAAGGAAGGGGAAATATTTTATTAAAAATCATAAATAAGGTGGGTGAATGAATTGGGAAGTGTGAATGAATTAAATAAGATGGGTGTGGAAATCAATGGGAATAATTGGGTAGGTGGGTGGAATAAAGGTAGGATATAGTAGGAAATTAAATTGTAGAATGAGGGTATTTTGGGGGGAAAAAATTGCCATAAAAGGAAAAGATTTACAATAGGAAGAACAAAAAGGAACGTCAATTCGGGAAACGGGAAGAACATTTAGGAATGGAGAGAGTATAAGTATTACTATTAATCGTAATTGACTTCAATTTAATGCAATAAAATCATATTAAGCTCAACAATTGAGAATATTAAG

Coding sequence (CDS)

ATGCCCAGGTATTACTGCGACTACTGCGACACATACTTGACACATGATTCTCCATCTGTCAGGAAGCAACATAATGCGGGTTATAAACATAAGGCAAATGTGCGGATTTACTACCAGCAATTTGAGGAGCAACAGACGCAAAGTTTGATTGATCAGAGAATCAAGGAGCATCTTAGTGGCCAAGGTGCATTTCAAATTGGTGCTGCCTATGCAGCCTGGAGACCTGGTGTTAGGCCTCCTCTTCTTCCTGCACCTTTGCCGATTCCAGGTTCCCTTCCTTCGAATGCTCAAATGCCTCCAGGGATCAGGCTACCTGTTTTTCCTAGACCTCCTGGTTTTCCAGTTTATGGGGCACCTCCAGGACTAGTTGCAGGACAACCAGGTGCTCCTGGTGCACCTGTGCAAGCAAATGGTCTGCCTGGGCCTCCTCCTTTGACTACCTCAACATCAGTACCAGGGGCGACACCTCCTGTTACTAATGGTGGTGCTCCAACTGTATCACAGCCTGGGTTCCAGGGTGCTCCTGCAGGCGGGAGCTTTGGTGGGACAAACATGCCTGCAGTCCCTAGCTTCCCTTCTGCAGGTGGAAACGTTTCTTACCCTGCAACATCAGGTGCTGATGGATTTACGTATGCTCAAGCCCCAAACAGCAGTCTTCAGTCTAACTAA

Protein sequence

MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSGQGAFQIGAAYAAWRPGVRPPLLPAPLPIPGSLPSNAQMPPGIRLPVFPRPPGFPVYGAPPGLVAGQPGAPGAPVQANGLPGPPPLTTSTSVPGATPPVTNGGAPTVSQPGFQGAPAGGSFGGTNMPAVPSFPSAGGNVSYPATSGADGFTYAQAPNSSLQSN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo17216.1Spo17216.1mRNA


Homology
[Close]
BLAST of Spo17216.1 vs. NCBI nr
Match: gi|902233021|gb|KNA22901.1| (hypothetical protein SOVF_029220 [Spinacia oleracea])

HSP 1 Score: 440.3 bits (1131), Expect = 2.000e-120
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1 

		  

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60

Query: 61  QGAFQIGAAYAAWRPGVRPPLLPAPLPIPGSLPSNAQMPPGIRLPVFPRPPGFPVYGAPP 120
           QGAFQIGAAYAAWRPGVRPPLLPAPLPIPGSLPSNAQMPPGIRLPVFPRPPGFPVYGAPP
Sbjct: 61  QGAFQIGAAYAAWRPGVRPPLLPAPLPIPGSLPSNAQMPPGIRLPVFPRPPGFPVYGAPP 120

Query: 121 GLVAGQPGAPGAPVQANGLPGPPPLTTSTSVPGATPPVTNGGAPTVSQPGFQGAPAGGSF 180
           GLVAGQPGAPGAPVQANGLPGPPPLTTSTSVPGATPPVTNGGAPTVSQPGFQGAPAGGSF
Sbjct: 121 GLVAGQPGAPGAPVQANGLPGPPPLTTSTSVPGATPPVTNGGAPTVSQPGFQGAPAGGSF 180

Query: 181 GGTNMPAVPSFPSAGGNVSYPATSGADGFTYAQAPNSSLQSN 223
           GGTNMPAVPSFPSAGGNVSYPATSGADGFTYAQAPNSSLQSN
Sbjct: 181 GGTNMPAVPSFPSAGGNVSYPATSGADGFTYAQAPNSSLQSN 222
[Close]
BLAST of Spo17216.1 vs. NCBI nr
Match: gi|731374154|ref|XP_010666876.1| (PREDICTED: U1 small nuclear ribonucleoprotein C [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 354.0 bits (907), Expect = 1.900e-94
Identity = 181/220 (82.27%), Postives = 189/220 (85.91%), Query Frame = 1 

		  

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLSG
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLSG 60

Query: 61  QGAFQIGAAYAAWRPGVRPPLLPAPLPIPGSLPSNAQMPPGIRLPVFPRPPGFPVYGAPP 120
           QGAFQIGA YAAWRPGVRPP+LPAPLPIPGS+P N  M PGIRLP+ PRP G PVYG  P
Sbjct: 61  QGAFQIGATYAAWRPGVRPPILPAPLPIPGSVPPNGPMAPGIRLPMLPRPAGMPVYGTAP 120

Query: 121 GLV--AGQPGAPGAPVQANGLPGPPPLTTSTSVPGATPPVTNGGAPTVSQPGFQGAPAGG 180
           G     GQPGAPGAPVQ NGLPGPPP+T +TSVPGA PPVTNG  PT SQPGFQ APAGG
Sbjct: 121 GATPYLGQPGAPGAPVQPNGLPGPPPMTAATSVPGAPPPVTNGAPPTASQPGFQNAPAGG 180

Query: 181 SFGGTNMPAVPSFPSAGGNVSYPATSGADGFTYAQAPNSS 219
           SFGG + P  PSFPS GGN SYP +SGADGF YAQAPNS+
Sbjct: 181 SFGGASTPTGPSFPS-GGNASYPPSSGADGFNYAQAPNSN 219
[Close]
BLAST of Spo17216.1 vs. NCBI nr
Match: gi|902231049|gb|KNA22100.1| (hypothetical protein SOVF_037170 [Spinacia oleracea])

HSP 1 Score: 255.8 bits (652), Expect = 7.100e-65
Identity = 132/148 (89.19%), Postives = 133/148 (89.86%), Query Frame = 1 

		  

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60
           MPRYYCDYCDTYLTHDSPSVRKQHN GYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNEGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60

Query: 61  QGAFQIGAAYAAWRPGVRPPLLPAPLPIPGSL-PSNAQMPPGIRLPVFPR---PPGFPVY 120
           QGAFQIGAAYAAWRPG RPPLLPAPLPIPGSL P NAQM PGIRLPVFPR   PPGFPVY
Sbjct: 61  QGAFQIGAAYAAWRPGFRPPLLPAPLPIPGSLPPPNAQMAPGIRLPVFPRPPGPPGFPVY 120

Query: 121 GAPPGLVAGQPGA------PGAPVQANG 139
           GAPPG +AGQPGA      PGAPVQANG
Sbjct: 121 GAPPGQIAGQPGAPGPPGPPGAPVQANG 148
[Close]
BLAST of Spo17216.1 vs. NCBI nr
Match: gi|590566505|ref|XP_007010252.1| (C2H2 and C2HC zinc fingers superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 194.1 bits (492), Expect = 2.600e-46
Identity = 124/204 (60.78%), Postives = 136/204 (66.67%), Query Frame = 1 

		  

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHL  
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  QGAF-QIGAAYAAWRPGVRP--PLLPAP-LPIPGS--LPSNAQMPPGIRLPVFPRP-PGF 120
             AF Q+GAA+       RP  P+LP P +PIPG+  LP N  M PGIR PV PRP PG 
Sbjct: 61  AAAFQQVGAAFNQHLMAQRPRLPVLPTPVMPIPGAAPLPMNQPMVPGIRPPVLPRPLPGP 120

Query: 121 PVYGAPPGL--VAGQPGAPGAPVQANGLPGPPPLTTSTSVPG-ATPPVTNGGAPTVSQPG 180
           P Y   PG+  +   PGAP  P Q NG+P PP L   T+VPG AT P ++  APT+  P 
Sbjct: 121 PGYVPAPGMPPMVAPPGAPSLPGQINGVPRPPTLAPLTTVPGTATTPTSSNAAPTMVTPA 180

Query: 181 F----QGAPAGGSFGGTNMPAVPS 191
                  AP GG F   N  A PS
Sbjct: 181 SYQTNPAAPTGGGFDNFNANAQPS 204
[Close]
BLAST of Spo17216.1 vs. NCBI nr
Match: gi|590566509|ref|XP_007010253.1| (C2H2 and C2HC zinc fingers superfamily protein isoform 2 [Theobroma cacao])

HSP 1 Score: 189.1 bits (479), Expect = 8.200e-45
Identity = 118/187 (63.10%), Postives = 131/187 (70.05%), Query Frame = 1 

		  

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHL  
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  QGAF-QIGAAYAAWRPGVRP--PLLPAP-LPIPGS--LPSNAQMPPGIRLPVFPRP-PGF 120
             AF Q+GAA+       RP  P+LP P +PIPG+  LP N  M PGIR PV PRP PG 
Sbjct: 61  AAAFQQVGAAFNQHLMAQRPRLPVLPTPVMPIPGAAPLPMNQPMVPGIRPPVLPRPLPGP 120

Query: 121 PVYGAPPGL--VAGQPGAPGAPVQANGLPGPPPLTTSTSVPG-ATPPVTNGGAPTVSQP- 177
           P Y   PG+  +   PGAP  P Q NG+P PP L   T+VPG AT P ++  APT+  P 
Sbjct: 121 PGYVPAPGMPPMVAPPGAPSLPGQINGVPRPPTLAPLTTVPGTATTPTSSNAAPTMVTPA 180
[Close]
BLAST of Spo17216.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RTM7_SPIOL (U1 small nuclear ribonucleoprotein C OS=Spinacia oleracea GN=SOVF_029220 PE=3 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 1.400e-120
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1 

		  

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60

Query: 61  QGAFQIGAAYAAWRPGVRPPLLPAPLPIPGSLPSNAQMPPGIRLPVFPRPPGFPVYGAPP 120
           QGAFQIGAAYAAWRPGVRPPLLPAPLPIPGSLPSNAQMPPGIRLPVFPRPPGFPVYGAPP
Sbjct: 61  QGAFQIGAAYAAWRPGVRPPLLPAPLPIPGSLPSNAQMPPGIRLPVFPRPPGFPVYGAPP 120

Query: 121 GLVAGQPGAPGAPVQANGLPGPPPLTTSTSVPGATPPVTNGGAPTVSQPGFQGAPAGGSF 180
           GLVAGQPGAPGAPVQANGLPGPPPLTTSTSVPGATPPVTNGGAPTVSQPGFQGAPAGGSF
Sbjct: 121 GLVAGQPGAPGAPVQANGLPGPPPLTTSTSVPGATPPVTNGGAPTVSQPGFQGAPAGGSF 180

Query: 181 GGTNMPAVPSFPSAGGNVSYPATSGADGFTYAQAPNSSLQSN 223
           GGTNMPAVPSFPSAGGNVSYPATSGADGFTYAQAPNSSLQSN
Sbjct: 181 GGTNMPAVPSFPSAGGNVSYPATSGADGFTYAQAPNSSLQSN 222
[Close]
BLAST of Spo17216.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B3P1_BETVU (U1 small nuclear ribonucleoprotein C OS=Beta vulgaris subsp. vulgaris GN=BVRB_005130 PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.300e-94
Identity = 181/220 (82.27%), Postives = 189/220 (85.91%), Query Frame = 1 

		  

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLSG
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLSG 60

Query: 61  QGAFQIGAAYAAWRPGVRPPLLPAPLPIPGSLPSNAQMPPGIRLPVFPRPPGFPVYGAPP 120
           QGAFQIGA YAAWRPGVRPP+LPAPLPIPGS+P N  M PGIRLP+ PRP G PVYG  P
Sbjct: 61  QGAFQIGATYAAWRPGVRPPILPAPLPIPGSVPPNGPMAPGIRLPMLPRPAGMPVYGTAP 120

Query: 121 GLV--AGQPGAPGAPVQANGLPGPPPLTTSTSVPGATPPVTNGGAPTVSQPGFQGAPAGG 180
           G     GQPGAPGAPVQ NGLPGPPP+T +TSVPGA PPVTNG  PT SQPGFQ APAGG
Sbjct: 121 GATPYLGQPGAPGAPVQPNGLPGPPPMTAATSVPGAPPPVTNGAPPTASQPGFQNAPAGG 180

Query: 181 SFGGTNMPAVPSFPSAGGNVSYPATSGADGFTYAQAPNSS 219
           SFGG + P  PSFPS GGN SYP +SGADGF YAQAPNS+
Sbjct: 181 SFGGASTPTGPSFPS-GGNASYPPSSGADGFNYAQAPNSN 219
[Close]
BLAST of Spo17216.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRF2_SPIOL (U1 small nuclear ribonucleoprotein C OS=Spinacia oleracea GN=SOVF_037170 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 5.000e-65
Identity = 132/148 (89.19%), Postives = 133/148 (89.86%), Query Frame = 1 

		  

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60
           MPRYYCDYCDTYLTHDSPSVRKQHN GYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNEGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60

Query: 61  QGAFQIGAAYAAWRPGVRPPLLPAPLPIPGSL-PSNAQMPPGIRLPVFPR---PPGFPVY 120
           QGAFQIGAAYAAWRPG RPPLLPAPLPIPGSL P NAQM PGIRLPVFPR   PPGFPVY
Sbjct: 61  QGAFQIGAAYAAWRPGFRPPLLPAPLPIPGSLPPPNAQMAPGIRLPVFPRPPGPPGFPVY 120

Query: 121 GAPPGLVAGQPGA------PGAPVQANG 139
           GAPPG +AGQPGA      PGAPVQANG
Sbjct: 121 GAPPGQIAGQPGAPGPPGPPGAPVQANG 148
[Close]
BLAST of Spo17216.1 vs. UniProtKB/TrEMBL
Match: A0A061FQX2_THECC (U1 small nuclear ribonucleoprotein C OS=Theobroma cacao GN=TCM_043735 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.800e-46
Identity = 124/204 (60.78%), Postives = 136/204 (66.67%), Query Frame = 1 

		  

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHL  
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  QGAF-QIGAAYAAWRPGVRP--PLLPAP-LPIPGS--LPSNAQMPPGIRLPVFPRP-PGF 120
             AF Q+GAA+       RP  P+LP P +PIPG+  LP N  M PGIR PV PRP PG 
Sbjct: 61  AAAFQQVGAAFNQHLMAQRPRLPVLPTPVMPIPGAAPLPMNQPMVPGIRPPVLPRPLPGP 120

Query: 121 PVYGAPPGL--VAGQPGAPGAPVQANGLPGPPPLTTSTSVPG-ATPPVTNGGAPTVSQPG 180
           P Y   PG+  +   PGAP  P Q NG+P PP L   T+VPG AT P ++  APT+  P 
Sbjct: 121 PGYVPAPGMPPMVAPPGAPSLPGQINGVPRPPTLAPLTTVPGTATTPTSSNAAPTMVTPA 180

Query: 181 F----QGAPAGGSFGGTNMPAVPS 191
                  AP GG F   N  A PS
Sbjct: 181 SYQTNPAAPTGGGFDNFNANAQPS 204
[Close]
BLAST of Spo17216.1 vs. UniProtKB/TrEMBL
Match: A0A061FQ72_THECC (U1 small nuclear ribonucleoprotein C OS=Theobroma cacao GN=TCM_043735 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 5.700e-45
Identity = 118/187 (63.10%), Postives = 131/187 (70.05%), Query Frame = 1 

		  

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHL  
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  QGAF-QIGAAYAAWRPGVRP--PLLPAP-LPIPGS--LPSNAQMPPGIRLPVFPRP-PGF 120
             AF Q+GAA+       RP  P+LP P +PIPG+  LP N  M PGIR PV PRP PG 
Sbjct: 61  AAAFQQVGAAFNQHLMAQRPRLPVLPTPVMPIPGAAPLPMNQPMVPGIRPPVLPRPLPGP 120

Query: 121 PVYGAPPGL--VAGQPGAPGAPVQANGLPGPPPLTTSTSVPG-ATPPVTNGGAPTVSQP- 177
           P Y   PG+  +   PGAP  P Q NG+P PP L   T+VPG AT P ++  APT+  P 
Sbjct: 121 PGYVPAPGMPPMVAPPGAPSLPGQINGVPRPPTLAPLTTVPGTATTPTSSNAAPTMVTPA 180
[Close]
BLAST of Spo17216.1 vs. ExPASy Swiss-Prot
Match: RU1C_VITVI (U1 small nuclear ribonucleoprotein C OS=Vitis vinifera GN=VIT_07s0104g01170 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 7.400e-46
Identity = 117/198 (59.09%), Postives = 136/198 (68.69%), Query Frame = 1 

		  

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHL  
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  QGAF-QIGAAY-------AAWRPGVRPPLLPAP-LPIPGS--LPSNAQMPPGIRLPVFPR 120
             AF Q+GAAY           P  R P+LP P +P+ GS  LP N+ + PG+R PV PR
Sbjct: 61  TAAFQQVGAAYNQHLVSFPGNPPRPRLPVLPTPGMPVAGSAPLPMNSPLVPGMRPPVLPR 120

Query: 121 P-PGFPVYGAPPGL--VAGQPGAPGAPV-QANGLPGPPPLTTSTSVPGATPPVTNGGAPT 180
           P PG P Y   PG+  +   PGAP  P+   N LP PP +    +VPG+T   T+GGAP+
Sbjct: 121 PVPGAPGYMPAPGMPSMMAPPGAPSMPMPPLNSLPRPPTMNVPPAVPGSTSTPTSGGAPS 180

Query: 181 -VSQPGFQGAPAGGSFGG 183
            ++QP +Q  PAG + GG
Sbjct: 181 MMTQPMYQANPAGPTSGG 198
[Close]
BLAST of Spo17216.1 vs. ExPASy Swiss-Prot
Match: RU1C2_SORBI (U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor GN=Sb04g028260 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.100e-38
Identity = 117/235 (49.79%), Postives = 129/235 (54.89%), Query Frame = 1 

		  

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHL  
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  QGAFQIGAAY------------------------------AAWRPGVRPPLLPAPLPIPG 120
             AFQ GA +                              A   PGVRPP+LPAP     
Sbjct: 61  AAAFQAGAPFNQHMLAFPGAVARPRLPILPTPGMPHGFPQAPLMPGVRPPILPAP----- 120

Query: 121 SLPSNAQMPPGIRLPVFPRPPGFPVYGAPPGLVAGQPGAP--GAPVQANGLPGPPPLTTS 180
            +P     PP +  P  P P   P  GAPPG +  QPGAP    P+Q   LP PP L   
Sbjct: 121 GVPGYPGAPPTMPQPGAP-PGSMPQPGAPPGSMP-QPGAPPGSMPMQMAPLPRPPTLPPP 180

Query: 181 TS-VPGATPPVTNGGAPTVSQPGFQGAPAGGSFGGTNMPAVPSFPSAGGNVSYPA 203
           TS VPGA  P+ N  AP         APAG + G    PA P+ P    + + P+
Sbjct: 181 TSGVPGA--PIPNSAAPPAIYQANPPAPAGPTSGAP--PAPPTAPQPAFSYALPS 224
[Close]
BLAST of Spo17216.1 vs. ExPASy Swiss-Prot
Match: RU1C1_SORBI (U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor GN=Sb04g009880 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.800e-37
Identity = 119/238 (50.00%), Postives = 130/238 (54.62%), Query Frame = 1 

		  

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHL  
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  QGAFQIGA-----------AYAAWR----------------------PGVRPPLLPAPLP 120
             AFQ GA           A A  R                      PGVRPP+LPAP  
Sbjct: 61  AAAFQAGAPFNQHMLTFPGAVARPRLPILPTPGMPHGFPQAPGAPLMPGVRPPILPAP-- 120

Query: 121 IPGSLPSNAQMPPGIRLPVFPRPPGFPVYGAPPGLVAGQPGAP--GAPVQANGLPGPPPL 180
               +P     PP +  P  P P   P  GAPPG +  QPGAP    P+Q   LP PP L
Sbjct: 121 ---GIPGYPGGPPTMLQPGAP-PGSMPQPGAPPGSMP-QPGAPPGSMPMQMAPLPRPPTL 180

Query: 181 TTSTS-VPGATPPVTNGGAPTVSQPGFQGAPAGGSFGGTNMPAVPSFPSAGGNVSYPA 203
              TS VPGA  P+ N  AP         APAG + G    PA P+ P    + + P+
Sbjct: 181 PPPTSGVPGA--PIPNSAAPPAIYQTNPPAPAGPTSGAP--PAPPTAPQPAFSYAQPS 227
[Close]
BLAST of Spo17216.1 vs. ExPASy Swiss-Prot
Match: RU1C_ARATH (U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana GN=At4g03120 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.000e-34
Identity = 103/203 (50.74%), Postives = 116/203 (57.14%), Query Frame = 1 

		  

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHL  
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  QGAF-QIGAAY-----AAWRP-----------GVRPPLLPAP-LPIPGSLPSNAQMPPGI 120
            G + Q+GA +     A  RP           G+RPP+LP P +P  G +P     PPG+
Sbjct: 61  TGGYQQVGAVFNQHMLARPRPPMMLPPGSMPMGMRPPVLPRPMMPPQGYMP-----PPGV 120

Query: 121 RLPVFPRPPGFPVYGAPPGLVAGQPGAPGAPVQANGLPGPPPLTTSTSVPGATPPVTNGG 180
             P    PPG P+   P   +   PG    P Q  G PG  P+       G  PP  NG 
Sbjct: 121 --PQMMAPPGAPLPPPPQNGILRPPGMAPIPGQGGGPPGMAPI---PGQGGGPPPNYNGL 180

Query: 181 APTVSQPGFQGAPAGGSFGGTNM 186
            P         AP  G+F   N+
Sbjct: 181 PPPPPYHTNPAAPPSGNFNNPNL 193
[Close]
BLAST of Spo17216.1 vs. ExPASy Swiss-Prot
Match: RU1C_NEMVE (U1 small nuclear ribonucleoprotein C OS=Nematostella vectensis GN=v1g244745 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.700e-19
Identity = 70/147 (47.62%), Postives = 81/147 (55.10%), Query Frame = 1 

		  

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60
           MP+YYCDYCDT+LTHDSPSVRK HN G KHK NVR YYQ++ E+Q Q+LIDQ        
Sbjct: 1   MPKYYCDYCDTFLTHDSPSVRKTHNNGRKHKENVRFYYQKWMEEQAQTLIDQTT------ 60

Query: 61  QGAFQIGAAYAAWRPGVRPPLLPAPL-PIPGSLPSNAQMPPGIRLPVFPRPPGFPVYGAP 120
                  AA+ +      PP  P  L P PG LP    MPPG R+P    P G P    P
Sbjct: 61  -------AAFQSKPNSQMPPNAPPGLMPPPGMLPPPGGMPPG-RMP----PQGLPF--PP 120

Query: 121 PGLVAGQPGAPG--APVQANGLPGPPP 145
           PG +   PGA G   P     + GP P
Sbjct: 121 PGPIPPPPGAGGMRPPHGQMHMGGPRP 127
[Close]
BLAST of Spo17216.1 vs. TAIR (Arabidopsis)
Match: AT4G03120.1 (C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 148.3 bits (373), Expect = 5.700e-36
Identity = 103/203 (50.74%), Postives = 116/203 (57.14%), Query Frame = 1 

		  

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSG 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHL  
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  QGAF-QIGAAY-----AAWRP-----------GVRPPLLPAP-LPIPGSLPSNAQMPPGI 120
            G + Q+GA +     A  RP           G+RPP+LP P +P  G +P     PPG+
Sbjct: 61  TGGYQQVGAVFNQHMLARPRPPMMLPPGSMPMGMRPPVLPRPMMPPQGYMP-----PPGV 120

Query: 121 RLPVFPRPPGFPVYGAPPGLVAGQPGAPGAPVQANGLPGPPPLTTSTSVPGATPPVTNGG 180
             P    PPG P+   P   +   PG    P Q  G PG  P+       G  PP  NG 
Sbjct: 121 --PQMMAPPGAPLPPPPQNGILRPPGMAPIPGQGGGPPGMAPI---PGQGGGPPPNYNGL 180

Query: 181 APTVSQPGFQGAPAGGSFGGTNM 186
            P         AP  G+F   N+
Sbjct: 181 PPPPPYHTNPAAPPSGNFNNPNL 193
The following BLAST results are available for this feature:
BLAST of Spo17216.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902233021|gb|KNA22901.1|2.0e-120100.hypothetical protein SOVF_0292... [more]
gi|731374154|ref|XP_010666876.1|1.9e-9482.2PREDICTED: U1 small nuclear ri... [more]
gi|902231049|gb|KNA22100.1|7.1e-6589.1hypothetical protein SOVF_0371... [more]
gi|590566505|ref|XP_007010252.1|2.6e-4660.7C2H2 and C2HC zinc fingers sup... [more]
gi|590566509|ref|XP_007010253.1|8.2e-4563.1C2H2 and C2HC zinc fingers sup... [more]
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BLAST of Spo17216.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RTM7_SPIOL1.4e-120100.U1 small nuclear ribonucleopro... [more]
A0A0J8B3P1_BETVU1.3e-9482.2U1 small nuclear ribonucleopro... [more]
A0A0K9RRF2_SPIOL5.0e-6589.1U1 small nuclear ribonucleopro... [more]
A0A061FQX2_THECC1.8e-4660.7U1 small nuclear ribonucleopro... [more]
A0A061FQ72_THECC5.7e-4563.1U1 small nuclear ribonucleopro... [more]
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BLAST of Spo17216.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RU1C_VITVI7.4e-4659.0U1 small nuclear ribonucleopro... [more]
RU1C2_SORBI1.1e-3849.7U1 small nuclear ribonucleopro... [more]
RU1C1_SORBI2.8e-3750.0U1 small nuclear ribonucleopro... [more]
RU1C_ARATH1.0e-3450.7U1 small nuclear ribonucleopro... [more]
RU1C_NEMVE2.7e-1947.6U1 small nuclear ribonucleopro... [more]
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BLAST of Spo17216.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G03120.15.7e-3650.7C2H2 and C2HC zinc fingers sup... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000690Zinc finger, C2H2-type matrinPROFILEPS50171ZF_MATRINcoord: 4..36
score: 12
IPR003604Zinc finger, U1-typeSMARTSM00451ZnF_U1_5coord: 1..37
score: 1.5
IPR013085Zinc finger, U1-C typePFAMPF06220zf-U1coord: 1..38
score: 7.4
IPR017340U1 small nuclear ribonucleoprotein CHAMAPMF_03153U1_Ccoord: 1..169
score: 11
IPR017340U1 small nuclear ribonucleoprotein CPANTHERPTHR31148FAMILY NOT NAMEDcoord: 2..211
score: 3.6
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 1..56
score: 1.55

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0009987 cellular process
biological_process GO:0006886 intracellular protein transport
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0015991 ATP hydrolysis coupled proton transport
cellular_component GO:0005634 nucleus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0033179 proton-transporting V-type ATPase, V0 domain
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0044425 membrane part
cellular_component GO:0005576 extracellular region
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005744 mitochondrial inner membrane presequence translocase complex
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005684 U2-type spliceosomal complex
molecular_function GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0000166 nucleotide binding
RNA-Seq Expression