Spo17135 (gene)

Overview
NameSpo17135
Typegene
OrganismSpinacia oleracea (Spinach)
Description60S ribosomal protein L18, putative
LocationSpoScf_02037 : 88209 .. 91221 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTTCTAGTTTAATAAAATTTGGTTTAGGGCCTAATTCAAAAGGTTACAAGCCTAAATCCATCCAAGTCCACCCATTATCTCAAACCCCTAACAACAAACCCACACAACCCATCAACAATTTGGATCCGATCCAACCCAAACCAAATGAAATACCACCAGCATCTCCACCCTACAACACCCACCAAAGCCCGTTTCCAAATATAAAAGCGCAAAAACCCTAGTTCATTTTTCTCTCTTGCCATTAGCATCTGCCGATTCCCGCACACCAGATCACCAGTTCCTTGCGCAACCATGGTAACTCTCCCTTTCTTTCTGTCTACTCCATTTCTTCACCTTCCACCCTCTTTCTCTCATCACAATTTGCTTGTTGTTGTGGTTTCAGGGTATTGATTTGAAGGCCGGAGGCAAGAGCAAGAAGACCAAGCGCACTGCGCCTAAATCCAACGATGTTTACCTAAAGCTACTTGTTAAGGTACAATTTTTAATACCCAGAAAATTTCTCAAAAACCTAGTTTTATTTTGTGTTAAATTTCAGTTTTTTCGATGTAATGTATGAATTTAAATGGTGAGTTGATCTGTTTTTTTTTTTTTTTGCAGCTTTACCGTTTTTTGGTTCGAAGAACTGGTAGCGGTTTCAATGCTGTGGTTTTGAAGAGGCTTTTTATGAGCAAGATTAACAAAGCCCCTCTTTCCCTCTCCAGACTTGTTAAGTATATGGAGGGCAAGGTATAAACTTTCTTTTTAAATATTGGTTTTATTTATTCGTGGCTTGAATTATCGGGGGTTTGATTCCGGCTAGAAAAATATATATTTGAAACATGATAAAAGAAGTCATAGTTTAAGCAATTTTATGTATCTCAAATGTAGTACGTACTTAGTTATGCCTGTAATATTCAAGTCCCAAGTGCGGTAGGAGTGATAAGTTGGTTACTAATGTGATCCCTATTCGGTTCTGAGTACGGTTTCAATCCCACAATGACCTGTCTGAAAACATGAGCCCAGTTCCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCAACAGTAACCAGAGGCAACTTTAAACTACTACTAGAGCCGTCGGCTACTGCTGTTGTTGCTGTATGGGGATTTTCAATAAGTGATTGGGGTTATTGAATTGAAATGTTTGTTGTGTAGGATGAGCAGACTGCAGTTTTGGTGGGAACTGTGACCGATGATATTAGGGTTTATGAGGTGCCTTCCATCAAGGTTTGTGCTTTGAGGTTCACTGAAACCGCCAGGGCTCGTATTGAGAAGGCCGGTGGCGAGTGTCTTACTTTCGATCAGTTGGCTTTGAGAGCTCCTCTTGGCCAGAACACGGTATAATTGCTTTTATCTAATTTATTTTGTTATTTTTGTTGCGCATATGTTTGTGTTTAGATGTTGCCATTTGAGTACTACTACATTGTTATGATGTGTATTTTCGGGACTCTAGTGTTTATACCTATTTTTGCAGCTGTATTTCTTTGCATTGACGCTGTGTTGTTTGGATTTTGATGTTGATTAGAAATTTGTTGAATTGCATGTATTGTTTATTTTGTGTGTGGCTATGGAGCTGGGTTGAGTATGTCTAAGGAGATGTTAATTATGCATAGGATCTGTGGTTATGTATGCAGGGGGTATGTTGAGGTGGGCTTATTTCCATCATAGATTATGAATTGTAGAGCTAAATTTTATCTGCTTCAACAAGGCTGCCCATAGCATACAGTATGTAAACATGACATGTCTCTTCTGTACTCCAAAAAGGTCCAAATATCTATTATATCTCCCTCTTTTTGTGAGATCATTGAAAATCATTTTCTTAAAGTCCAAATATCTATGGAAGTCTAATTTTGTGATATTGCCAAAACACCTCTTATTATCTTCAAGACTGATCTGATTGCCTTATCATTCATTTCAAAACTAGACTTTTTTGTCTGTTTATGATGATTATCTGATGTTTAATGTTATTTAATTATCATTAAATTGCCCTTTCCCTGCGTTTGTCTGAAATTGCCGTCCAATATTCCTTCTTAAGTGATGCTTGATATCAATAATGTAATGAAGTTCTCTGTACTATTTTTTTTAATATAATATCTGAGTTCTCCAATCTCTTGTTCAAGCTTCTTGTGTGAATTACCTTGCCCTGTATGATAGAGCTTACTGCCTCCACTCTTTCCCTTTACCTGCCTTGGAGTCAAATGAGTGATAACTTGGCAAACATGATGCTTGCATGCTTTTGGTACATACGTGTGTCAAAAGGGATGAATGTGATCTGAATTTGAATTAAGAGATTTTGGTTAGTGAGGACATTTATACAAGTGTAGTTTTCTTCAATATGAGTGAGGCATTGTTTAACTTTTTGACTATGGAATTCCGGCAGGTGTTGCTTAGGGGTCCTAAGAATGCTAGAGAGGCTGTCAAGCACTTTGGCAAAGCTCCTGGTGTTCCTGGCAGTCACACCAAGCCTTATGTCCGATCTACTGGCAGGAAGTTCGAGAAGGCTAGAGGTAGACGTAACAGCCGTGGTTACAGAAATTAAGTCAAGTTTCAAGATAGAAGAGCTAATTCATCTCTGTTTAAGACTTTTGTCAATCGATATACACTATTTCGTTTTGTGTGTTGGTTTTCCTTCATATTAGCAAAGCATATTATTAGTTATAGCAGATTTTACCCCGACTTTAATGTTATCATCAGTTTTGGAGGTAAATTTTGTTGAAGAGATTGCTATATCTGTGTTGCTTTTGCTTAAGAATGCCGCTTAGAAGAAAATTTCGATTGAAACATGACCCTTATTTAAGGAAGTTCTTCTATTTGTATTCTCAGTCTTCAAGTATGGTTTATCGCAGTTGTGTTTTTTATTGATAGCTCTTAATCGCTTTTATAGTTTCAGAGGAAAGTTTTGGCTAATTGTTGTTAGCTCTTAATTTCAGCCGTGGAATGTTGGGTTATAAGTCTATGACTTGTAATAAGAGAAGCCAGTTTTATGAATCCGGGCATCGGTGC

mRNA sequence

GGTTTCTAGTTTAATAAAATTTGGTTTAGGGCCTAATTCAAAAGGTTACAAGCCTAAATCCATCCAAGTCCACCCATTATCTCAAACCCCTAACAACAAACCCACACAACCCATCAACAATTTGGATCCGATCCAACCCAAACCAAATGAAATACCACCAGCATCTCCACCCTACAACACCCACCAAAGCCCGTTTCCAAATATAAAAGCGCAAAAACCCTAGTTCATTTTTCTCTCTTGCCATTAGCATCTGCCGATTCCCGCACACCAGATCACCAGTTCCTTGCGCAACCATGGGTATTGATTTGAAGGCCGGAGGCAAGAGCAAGAAGACCAAGCGCACTGCGCCTAAATCCAACGATGTTTACCTAAAGCTACTTGTTAAGCTTTACCGTTTTTTGGTTCGAAGAACTGGTAGCGGTTTCAATGCTGTGGTTTTGAAGAGGCTTTTTATGAGCAAGATTAACAAAGCCCCTCTTTCCCTCTCCAGACTTGTTAAGTATATGGAGGGCAAGGATGAGCAGACTGCAGTTTTGGTGGGAACTGTGACCGATGATATTAGGGTTTATGAGGTGCCTTCCATCAAGGTTTGTGCTTTGAGGTTCACTGAAACCGCCAGGGCTCGTATTGAGAAGGCCGGTGGCGAGTGTCTTACTTTCGATCAGTTGGCTTTGAGAGCTCCTCTTGGCCAGAACACGGTGTTGCTTAGGGGTCCTAAGAATGCTAGAGAGGCTGTCAAGCACTTTGGCAAAGCTCCTGGTGTTCCTGGCAGTCACACCAAGCCTTATGTCCGATCTACTGGCAGGAAGTTCGAGAAGGCTAGAGGTAGACGTAACAGCCGTGGTTACAGAAATTAAGTCAAGTTTCAAGATAGAAGAGCTAATTCATCTCTGTTTAAGACTTTTGTCAATCGATATACACTATTTCGTTTTGTGTGTTGGTTTTCCTTCATATTAGCAAAGCATATTATTAGTTATAGCAGATTTTACCCCGACTTTAATGTTATCATCAGTTTTGGAGGTAAATTTTGTTGAAGAGATTGCTATATCTGTGTTGCTTTTGCTTAAGAATGCCGCTTAGAAGAAAATTTCGATTGAAACATGACCCTTATTTAAGGAAGTTCTTCTATTTGTATTCTCAGTCTTCAAGTATGGTTTATCGCAGTTGTGTTTTTTATTGATAGCTCTTAATCGCTTTTATAGTTTCAGAGGAAAGTTTTGGCTAATTGTTGTTAGCTCTTAATTTCAGCCGTGGAATGTTGGGTTATAAGTCTATGACTTGTAATAAGAGAAGCCAGTTTTATGAATCCGGGCATCGGTGC

Coding sequence (CDS)

ATGGGTATTGATTTGAAGGCCGGAGGCAAGAGCAAGAAGACCAAGCGCACTGCGCCTAAATCCAACGATGTTTACCTAAAGCTACTTGTTAAGCTTTACCGTTTTTTGGTTCGAAGAACTGGTAGCGGTTTCAATGCTGTGGTTTTGAAGAGGCTTTTTATGAGCAAGATTAACAAAGCCCCTCTTTCCCTCTCCAGACTTGTTAAGTATATGGAGGGCAAGGATGAGCAGACTGCAGTTTTGGTGGGAACTGTGACCGATGATATTAGGGTTTATGAGGTGCCTTCCATCAAGGTTTGTGCTTTGAGGTTCACTGAAACCGCCAGGGCTCGTATTGAGAAGGCCGGTGGCGAGTGTCTTACTTTCGATCAGTTGGCTTTGAGAGCTCCTCTTGGCCAGAACACGGTGTTGCTTAGGGGTCCTAAGAATGCTAGAGAGGCTGTCAAGCACTTTGGCAAAGCTCCTGGTGTTCCTGGCAGTCACACCAAGCCTTATGTCCGATCTACTGGCAGGAAGTTCGAGAAGGCTAGAGGTAGACGTAACAGCCGTGGTTACAGAAATTAA

Protein sequence

MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKAPLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRRNSRGYRN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo17135.1Spo17135.1mRNA


Homology
[Close]
BLAST of Spo17135.1 vs. NCBI nr
Match: gi|902226296|gb|KNA20321.1| (hypothetical protein SOVF_053110 [Spinacia oleracea])

HSP 1 Score: 363.6 bits (932), Expect = 2.000e-97
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1 

		  

Query: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA 60
           MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA 60

Query: 61  PLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL 120
           PLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR 180
           TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR 180

Query: 181 NSRGYRN 188
           NSRGYRN
Sbjct: 181 NSRGYRN 187
[Close]
BLAST of Spo17135.1 vs. NCBI nr
Match: gi|902187081|gb|KNA10844.1| (hypothetical protein SOVF_140570 [Spinacia oleracea])

HSP 1 Score: 354.8 bits (909), Expect = 9.500e-95
Identity = 182/187 (97.33%), Postives = 185/187 (98.93%), Query Frame = 1 

		  

Query: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA 60
           MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGS FNAVVLKRLFMSK NKA
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSDFNAVVLKRLFMSKTNKA 60

Query: 61  PLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL 120
           PLSLSRLV+YM+GKDE+TAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLVEYMQGKDEKTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR 180
           TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR 180

Query: 181 NSRGYRN 188
           NSRGYRN
Sbjct: 181 NSRGYRN 187
[Close]
BLAST of Spo17135.1 vs. NCBI nr
Match: gi|731346235|ref|XP_010684349.1| (PREDICTED: 60S ribosomal protein L18-2-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 341.3 bits (874), Expect = 1.100e-90
Identity = 174/186 (93.55%), Postives = 181/186 (97.31%), Query Frame = 1 

		  

Query: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA 60
           MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGS FNAVVLKRLFMSKINKA
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSKFNAVVLKRLFMSKINKA 60

Query: 61  PLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL 120
           PLSLSRLVKYMEGKD + AVLVGT+TDDIRVYEVP++KVCALRFTETARARIEKAGGEC+
Sbjct: 61  PLSLSRLVKYMEGKDGRIAVLVGTITDDIRVYEVPTMKVCALRFTETARARIEKAGGECI 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR 180
           TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVP SHTKPYVR+ GRKFE+ARGRR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPHSHTKPYVRANGRKFERARGRR 180

Query: 181 NSRGYR 187
           NSRGYR
Sbjct: 181 NSRGYR 186
[Close]
BLAST of Spo17135.1 vs. NCBI nr
Match: gi|731326547|ref|XP_010674074.1| (PREDICTED: 60S ribosomal protein L18-2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 331.3 bits (848), Expect = 1.100e-87
Identity = 168/186 (90.32%), Postives = 178/186 (95.70%), Query Frame = 1 

		  

Query: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA 60
           MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGS FN VVLKRLFMSKINKA
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSSFNGVVLKRLFMSKINKA 60

Query: 61  PLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL 120
           PLSLSRL+ YM+GK+++ AV+VG VTDDIRVYEVP++KV ALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLITYMKGKEDKIAVIVGAVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR 180
           TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVP SHTKPYVR+ GRKFE+ARGRR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPHSHTKPYVRANGRKFERARGRR 180

Query: 181 NSRGYR 187
           NSRGYR
Sbjct: 181 NSRGYR 186
[Close]
BLAST of Spo17135.1 vs. NCBI nr
Match: gi|965608593|dbj|BAT95084.1| (hypothetical protein VIGAN_08174700 [Vigna angularis var. angularis])

HSP 1 Score: 329.3 bits (843), Expect = 4.300e-87
Identity = 166/186 (89.25%), Postives = 178/186 (95.70%), Query Frame = 1 

		  

Query: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA 60
           MGIDLKAGGKSKKTKRTAPKSND+YLKLLVKLYRFLVRRTGS FNAV+LKRLFMSK+NKA
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKA 60

Query: 61  PLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL 120
           PLSLSRL+KY +GK+++ AV+VGTVTDDIRVYEVP +KV ALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIKYTKGKEDRIAVVVGTVTDDIRVYEVPPLKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR 180
           TFDQLALRAPLGQNTVLLRGPKNAREAVKHFG APGVP SHTKPYVRS GRKFE+ARGRR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRR 180

Query: 181 NSRGYR 187
           NSRG+R
Sbjct: 181 NSRGFR 186
[Close]
BLAST of Spo17135.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RLB8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_053110 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 1.400e-97
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1 

		  

Query: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA 60
           MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA 60

Query: 61  PLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL 120
           PLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR 180
           TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR 180

Query: 181 NSRGYRN 188
           NSRGYRN
Sbjct: 181 NSRGYRN 187
[Close]
BLAST of Spo17135.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QUA3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_140570 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 6.600e-95
Identity = 182/187 (97.33%), Postives = 185/187 (98.93%), Query Frame = 1 

		  

Query: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA 60
           MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGS FNAVVLKRLFMSK NKA
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSDFNAVVLKRLFMSKTNKA 60

Query: 61  PLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL 120
           PLSLSRLV+YM+GKDE+TAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLVEYMQGKDEKTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR 180
           TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR 180

Query: 181 NSRGYRN 188
           NSRGYRN
Sbjct: 181 NSRGYRN 187
[Close]
BLAST of Spo17135.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C1K4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g163580 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 7.600e-91
Identity = 174/186 (93.55%), Postives = 181/186 (97.31%), Query Frame = 1 

		  

Query: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA 60
           MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGS FNAVVLKRLFMSKINKA
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSKFNAVVLKRLFMSKINKA 60

Query: 61  PLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL 120
           PLSLSRLVKYMEGKD + AVLVGT+TDDIRVYEVP++KVCALRFTETARARIEKAGGEC+
Sbjct: 61  PLSLSRLVKYMEGKDGRIAVLVGTITDDIRVYEVPTMKVCALRFTETARARIEKAGGECI 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR 180
           TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVP SHTKPYVR+ GRKFE+ARGRR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPHSHTKPYVRANGRKFERARGRR 180

Query: 181 NSRGYR 187
           NSRGYR
Sbjct: 181 NSRGYR 186
[Close]
BLAST of Spo17135.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FEI6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g076000 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 7.800e-88
Identity = 168/186 (90.32%), Postives = 178/186 (95.70%), Query Frame = 1 

		  

Query: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA 60
           MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGS FN VVLKRLFMSKINKA
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSSFNGVVLKRLFMSKINKA 60

Query: 61  PLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL 120
           PLSLSRL+ YM+GK+++ AV+VG VTDDIRVYEVP++KV ALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLITYMKGKEDKIAVIVGAVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR 180
           TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVP SHTKPYVR+ GRKFE+ARGRR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPHSHTKPYVRANGRKFERARGRR 180

Query: 181 NSRGYR 187
           NSRGYR
Sbjct: 181 NSRGYR 186
[Close]
BLAST of Spo17135.1 vs. UniProtKB/TrEMBL
Match: A0A0S3SQE8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G174700 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 3.000e-87
Identity = 166/186 (89.25%), Postives = 178/186 (95.70%), Query Frame = 1 

		  

Query: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA 60
           MGIDLKAGGKSKKTKRTAPKSND+YLKLLVKLYRFLVRRTGS FNAV+LKRLFMSK+NKA
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKA 60

Query: 61  PLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL 120
           PLSLSRL+KY +GK+++ AV+VGTVTDDIRVYEVP +KV ALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIKYTKGKEDRIAVVVGTVTDDIRVYEVPPLKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR 180
           TFDQLALRAPLGQNTVLLRGPKNAREAVKHFG APGVP SHTKPYVRS GRKFE+ARGRR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRR 180

Query: 181 NSRGYR 187
           NSRG+R
Sbjct: 181 NSRGFR 186
[Close]
BLAST of Spo17135.1 vs. ExPASy Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 8.300e-83
Identity = 155/186 (83.33%), Postives = 174/186 (93.55%), Query Frame = 1 

		  

Query: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA 60
           MGIDL AGGKSKKTKRTAPKS+DVYLKLLVKLYRFLVRR+ S FNAV+LKRLFMSK+NKA
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL 120
           PLSLSRLV++M GKD++ AVLVGT+TDD+RV+E+P++KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR 180
           TFDQLALRAPLGQNTVLLRGPKN+REAVKHFG APGVP S+TKPYVR  GRKFEKARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSRGYR 187
            SRG++
Sbjct: 181 KSRGFK 186
[Close]
BLAST of Spo17135.1 vs. ExPASy Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2)

HSP 1 Score: 305.4 bits (781), Expect = 4.100e-82
Identity = 153/186 (82.26%), Postives = 173/186 (93.01%), Query Frame = 1 

		  

Query: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA 60
           MGIDL AGGKSKKTKRTAPKS+DVYLKL VKLYRFLVRRT S FN V+LKRLFMSK+NKA
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL 120
           PLSLSRLV++M GK+++ AVLVGT+TDD+RV+E+P++KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR 180
           TFDQLALRAPLGQNTVLLRGPKN+REAVKHFG APGVP SH+KPYVR+ GRKFEKARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSRGYR 187
            SRG++
Sbjct: 181 KSRGFK 186
[Close]
BLAST of Spo17135.1 vs. ExPASy Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.900e-79
Identity = 151/183 (82.51%), Postives = 168/183 (91.80%), Query Frame = 1 

		  

Query: 4   DLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKAPLS 63
           DLKAGGK+KKTKRT+PKSND+YLKLLVKLYRFLVRRT S FNAV+LKRLFMSK+N+ PLS
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 64  LSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECLTFD 123
           LSRL+KYM+GK+ +  V+VG VTDDIRVY+VP+IKV AL+FTETARARI+KAGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 124 QLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRRNSR 183
           QLALR PL  +TVLLRGPKNAREAVKHFG APGVP SHTKPYVRS GRKFEKARGRR SR
Sbjct: 121 QLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSR 180

Query: 184 GYR 187
           G+R
Sbjct: 181 GFR 182
[Close]
BLAST of Spo17135.1 vs. ExPASy Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3)

HSP 1 Score: 280.4 bits (716), Expect = 1.400e-74
Identity = 145/187 (77.54%), Postives = 163/187 (87.17%), Query Frame = 1 

		  

Query: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA 60
           MGIDL AGGKSKKTKRT PKS+DVYLKLLVK  R+LVRRT S FNAV+LKRLFMSK+NKA
Sbjct: 1   MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKA 60

Query: 61  PLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL 120
           PLSLSRLV+YM+GKD + AV+VGTVTDD+R+ +VP++ V ALRFTE+ARARI KAGGECL
Sbjct: 61  PLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECL 120

Query: 121 TFDQLALRAPL-GQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGR 180
           TFDQLAL  P   +NTVLLRGPKN REAVKHFG APGVP SHTKPYVR TG+K E ARGR
Sbjct: 121 TFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGR 180

Query: 181 RNSRGYR 187
           R SRG++
Sbjct: 181 RRSRGFK 187
[Close]
BLAST of Spo17135.1 vs. ExPASy Swiss-Prot
Match: RL18_MOUSE (60S ribosomal protein L18 OS=Mus musculus GN=Rpl18 PE=1 SV=3)

HSP 1 Score: 243.4 bits (620), Expect = 1.900e-63
Identity = 123/189 (65.08%), Postives = 152/189 (80.42%), Query Frame = 1 

		  

Query: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA 60
           MG+D++   K +K +R  PKS D+YL+LLVKLYRFL RRT S FN VVLKRLFMS+ N+ 
Sbjct: 1   MGVDIRHN-KDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRP 60

Query: 61  PLSLSRLVKYME--GKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGE 120
           PLSLSR+++ M+  G++ +TAV+VGTVTDD+R+ EVP +KVCALR +  AR+RI KAGG+
Sbjct: 61  PLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGK 120

Query: 121 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARG 180
            LTFDQLAL +P G+ TVLL GP+  RE  +HFGKAPG P SHTKPYVRS GRKFE+ARG
Sbjct: 121 ILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARG 180

Query: 181 RRNSRGYRN 188
           RR SRGY+N
Sbjct: 181 RRASRGYKN 188
[Close]
BLAST of Spo17135.1 vs. TAIR (Arabidopsis)
Match: AT5G27850.1 (Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 307.8 bits (787), Expect = 4.700e-84
Identity = 155/186 (83.33%), Postives = 174/186 (93.55%), Query Frame = 1 

		  

Query: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA 60
           MGIDL AGGKSKKTKRTAPKS+DVYLKLLVKLYRFLVRR+ S FNAV+LKRLFMSK+NKA
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL 120
           PLSLSRLV++M GKD++ AVLVGT+TDD+RV+E+P++KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR 180
           TFDQLALRAPLGQNTVLLRGPKN+REAVKHFG APGVP S+TKPYVR  GRKFEKARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSRGYR 187
            SRG++
Sbjct: 181 KSRGFK 186
[Close]
BLAST of Spo17135.1 vs. TAIR (Arabidopsis)
Match: AT3G05590.1 (ribosomal protein L18)

HSP 1 Score: 305.4 bits (781), Expect = 2.300e-83
Identity = 153/186 (82.26%), Postives = 173/186 (93.01%), Query Frame = 1 

		  

Query: 1   MGIDLKAGGKSKKTKRTAPKSNDVYLKLLVKLYRFLVRRTGSGFNAVVLKRLFMSKINKA 60
           MGIDL AGGKSKKTKRTAPKS+DVYLKL VKLYRFLVRRT S FN V+LKRLFMSK+NKA
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIEKAGGECL 120
           PLSLSRLV++M GK+++ AVLVGT+TDD+RV+E+P++KV ALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRKFEKARGRR 180
           TFDQLALRAPLGQNTVLLRGPKN+REAVKHFG APGVP SH+KPYVR+ GRKFEKARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSRGYR 187
            SRG++
Sbjct: 181 KSRGFK 186
[Close]
BLAST of Spo17135.1 vs. TAIR (Arabidopsis)
Match: AT2G47570.1 (Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 200.7 bits (509), Expect = 8.100e-52
Identity = 101/134 (75.37%), Postives = 116/134 (86.57%), Query Frame = 1 

		  

Query: 54  MSKINKAPLSLSRLVKYMEGKDEQTAVLVGTVTDDIRVYEVPSIKVCALRFTETARARIE 113
           MSK+NKAPLSLSRLV+YM+GKD + AV+VGTVTDD+R+ +VP++ V ALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 KAGGECLTFDQLALRAPL-GQNTVLLRGPKNAREAVKHFGKAPGVPGSHTKPYVRSTGRK 173
           KAGGECLTFDQLAL  P   +NTVLLRGPKN REAVKHFG APGVP SHTKPYVR TG+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 174 FEKARGRRNSRGYR 187
            E ARGRR SRG++
Sbjct: 121 IEIARGRRRSRGFK 134
The following BLAST results are available for this feature:
BLAST of Spo17135.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902226296|gb|KNA20321.1|2.0e-97100.hypothetical protein SOVF_0531... [more]
gi|902187081|gb|KNA10844.1|9.5e-9597.3hypothetical protein SOVF_1405... [more]
gi|731346235|ref|XP_010684349.1|1.1e-9093.5PREDICTED: 60S ribosomal prote... [more]
gi|731326547|ref|XP_010674074.1|1.1e-8790.3PREDICTED: 60S ribosomal prote... [more]
gi|965608593|dbj|BAT95084.1|4.3e-8789.2hypothetical protein VIGAN_081... [more]
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BLAST of Spo17135.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RLB8_SPIOL1.4e-97100.Uncharacterized protein OS=Spi... [more]
A0A0K9QUA3_SPIOL6.6e-9597.3Uncharacterized protein OS=Spi... [more]
A0A0J8C1K4_BETVU7.6e-9193.5Uncharacterized protein OS=Bet... [more]
A0A0J8FEI6_BETVU7.8e-8890.3Uncharacterized protein OS=Bet... [more]
A0A0S3SQE8_PHAAN3.0e-8789.2Uncharacterized protein OS=Vig... [more]
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BLAST of Spo17135.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL183_ARATH8.3e-8383.360S ribosomal protein L18-3 OS... [more]
RL182_ARATH4.1e-8282.260S ribosomal protein L18-2 OS... [more]
RL18_CICAR1.9e-7982.560S ribosomal protein L18 (Fra... [more]
RL181_ARATH1.4e-7477.5Putative 60S ribosomal protein... [more]
RL18_MOUSE1.9e-6365.060S ribosomal protein L18 OS=M... [more]
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BLAST of Spo17135.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT5G27850.14.7e-8483.3Ribosomal protein L18e/L15 sup... [more]
AT3G05590.12.3e-8382.2ribosomal protein L18[more]
AT2G47570.18.1e-5275.3Ribosomal protein L18e/L15 sup... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000039Ribosomal protein L18ePANTHERPTHR1093460S RIBOSOMAL PROTEIN L18coord: 2..187
score: 8.7E
IPR021131Ribosomal protein L18e/L15PPFAMPF17135Ribosomal_L18coord: 2..186
score: 3.3
IPR021131Ribosomal protein L18e/L15PunknownSSF52080Ribosomal proteins L15p and L18ecoord: 20..139
score: 8.11
NoneNo IPR availableGENE3D3.100.10.10coord: 20..139
score: 1.5

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006334 nucleosome assembly
biological_process GO:0048767 root hair elongation
biological_process GO:0009750 response to fructose
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006816 calcium ion transport
biological_process GO:0006412 translation
biological_process GO:0009791 post-embryonic development
biological_process GO:0045040 protein import into mitochondrial outer membrane
biological_process GO:0009814 defense response, incompatible interaction
biological_process GO:0008152 metabolic process
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0009737 response to abscisic acid
biological_process GO:0000413 protein peptidyl-prolyl isomerization
biological_process GO:0006457 protein folding
biological_process GO:0010564 regulation of cell cycle process
biological_process GO:0006464 cellular protein modification process
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0048825 cotyledon development
biological_process GO:0051301 cell division
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0006399 tRNA metabolic process
biological_process GO:0006364 rRNA processing
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0009658 chloroplast organization
biological_process GO:0009697 salicylic acid biosynthetic process
biological_process GO:0055085 transmembrane transport
biological_process GO:0032259 methylation
biological_process GO:0009821 alkaloid biosynthetic process
biological_process GO:0007033 vacuole organization
biological_process GO:0010951 negative regulation of endopeptidase activity
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0009058 biosynthetic process
biological_process GO:0016310 phosphorylation
biological_process GO:0009657 plastid organization
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0006508 proteolysis
biological_process GO:0031118 rRNA pseudouridine synthesis
biological_process GO:0034968 histone lysine methylation
biological_process GO:0009451 RNA modification
biological_process GO:0006396 RNA processing
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0001510 RNA methylation
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0019430 removal of superoxide radicals
biological_process GO:0006177 GMP biosynthetic process
biological_process GO:0006541 glutamine metabolic process
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0006529 asparagine biosynthetic process
biological_process GO:0006522 alanine metabolic process
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0071806 protein transmembrane transport
biological_process GO:0006606 protein import into nucleus
biological_process GO:0019750 chloroplast localization
biological_process GO:0009250 glucan biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0009409 response to cold
biological_process GO:0009987 cellular process
biological_process GO:0006566 threonine metabolic process
biological_process GO:0006749 glutathione metabolic process
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0006096 glycolytic process
biological_process GO:0007030 Golgi organization
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0006972 hyperosmotic response
biological_process GO:0033036 macromolecule localization
biological_process GO:0006996 organelle organization
biological_process GO:0006102 isocitrate metabolic process
biological_process GO:0006434 seryl-tRNA aminoacylation
biological_process GO:0006094 gluconeogenesis
biological_process GO:0097056 selenocysteinyl-tRNA(Sec) biosynthetic process
biological_process GO:0009651 response to salt stress
biological_process GO:0006739 NADP metabolic process
biological_process GO:0009853 photorespiration
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0006499 N-terminal protein myristoylation
biological_process GO:0019643 reductive tricarboxylic acid cycle
biological_process GO:0051049 regulation of transport
biological_process GO:0051788 response to misfolded protein
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0071702 organic substance transport
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006414 translational elongation
biological_process GO:0015031 protein transport
biological_process GO:0010048 vernalization response
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0009845 seed germination
biological_process GO:0010162 seed dormancy process
biological_process GO:0050826 response to freezing
biological_process GO:0009909 regulation of flower development
biological_process GO:0016571 histone methylation
biological_process GO:0016567 protein ubiquitination
biological_process GO:0042742 defense response to bacterium
biological_process GO:0016579 protein deubiquitination
biological_process GO:0000338 protein deneddylation
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009640 photomorphogenesis
biological_process GO:0006406 mRNA export from nucleus
biological_process GO:0009933 meristem structural organization
biological_process GO:0010074 maintenance of meristem identity
biological_process GO:0019915 lipid storage
biological_process GO:0006833 water transport
biological_process GO:0006544 glycine metabolic process
cellular_component GO:0048046 apoplast
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005829 cytosol
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009295 nucleoid
cellular_component GO:0005732 small nucleolar ribonucleoprotein complex
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0005853 eukaryotic translation elongation factor 1 complex
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0005739 mitochondrion
cellular_component GO:0000786 nucleosome
cellular_component GO:0005840 ribosome
cellular_component GO:0016607 nuclear speck
cellular_component GO:0005643 nuclear pore
cellular_component GO:0009506 plasmodesma
cellular_component GO:0010319 stromule
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005741 mitochondrial outer membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0005744 mitochondrial inner membrane presequence translocase complex
cellular_component GO:0005742 mitochondrial outer membrane translocase complex
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0005622 intracellular
cellular_component GO:0009507 chloroplast
cellular_component GO:0031965 nuclear membrane
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0042644 chloroplast nucleoid
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0009536 plastid
cellular_component GO:0009707 chloroplast outer membrane
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0005730 nucleolus
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0008266 poly(U) RNA binding
molecular_function GO:0000049 tRNA binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0008173 RNA methyltransferase activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0004784 superoxide dismutase activity
molecular_function GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function GO:0003690 double-stranded DNA binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
molecular_function GO:0004386 helicase activity
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
molecular_function GO:0042393 histone binding
molecular_function GO:0005515 protein binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0030750 putrescine N-methyltransferase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0004828 serine-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0051287 NAD binding
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0004450 isocitrate dehydrogenase (NADP+) activity
molecular_function GO:0005507 copper ion binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0008235 metalloexopeptidase activity
molecular_function GO:0004177 aminopeptidase activity
molecular_function GO:0030515 snoRNA binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0016462 pyrophosphatase activity
molecular_function GO:0003922 GMP synthase (glutamine-hydrolyzing) activity
molecular_function GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0003924 GTPase activity
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0043169 cation binding
molecular_function GO:0042803 protein homodimerization activity
molecular_function GO:0051087 chaperone binding
molecular_function GO:0000774 adenyl-nucleotide exchange factor activity
molecular_function GO:0008233 peptidase activity
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity
molecular_function GO:0046982 protein heterodimerization activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo037080.86Barchart | Table
Spo137310.83Barchart | Table
Spo056070.79Barchart | Table
Spo266360.79Barchart | Table
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