Spo16988 (gene)

Overview
NameSpo16988
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 78633838 .. 78634137 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATACAAATCTCGGCTACTATCTAAGCCACCAGTTGCAGCTGGCGGAGGAGTCCACATGAGGATTAAGAGGAGAGATACTCCGGCGGCATCGACTTCTTCTCCGTCTTTAAAAGGGTTGGCATTATTATTTTTTGGTACTCAAGATGACACTAACAGGGATAAGTTGAGAAAACAGCAAATGATGAAAGAGTTGTTAATAAAAAGGGCGTTATCTCCGCCACCAAGACGGCTCACCTTGCGGTGGCGATACTTTCAGCCTACGCCGAGTCGCCTTTCTATGATGTCCACGGCCTGA

mRNA sequence

ATGCAATACAAATCTCGGCTACTATCTAAGCCACCAGTTGCAGCTGGCGGAGGAGTCCACATGAGGATTAAGAGGAGAGATACTCCGGCGGCATCGACTTCTTCTCCGTCTTTAAAAGGGTTGGCATTATTATTTTTTGGTACTCAAGATGACACTAACAGGGATAAGTTGAGAAAACAGCAAATGATGAAAGAGTTGTTAATAAAAAGGGCGTTATCTCCGCCACCAAGACGGCTCACCTTGCGGTGGCGATACTTTCAGCCTACGCCGAGTCGCCTTTCTATGATGTCCACGGCCTGA

Coding sequence (CDS)

ATGCAATACAAATCTCGGCTACTATCTAAGCCACCAGTTGCAGCTGGCGGAGGAGTCCACATGAGGATTAAGAGGAGAGATACTCCGGCGGCATCGACTTCTTCTCCGTCTTTAAAAGGGTTGGCATTATTATTTTTTGGTACTCAAGATGACACTAACAGGGATAAGTTGAGAAAACAGCAAATGATGAAAGAGTTGTTAATAAAAAGGGCGTTATCTCCGCCACCAAGACGGCTCACCTTGCGGTGGCGATACTTTCAGCCTACGCCGAGTCGCCTTTCTATGATGTCCACGGCCTGA

Protein sequence

MQYKSRLLSKPPVAAGGGVHMRIKRRDTPAASTSSPSLKGLALLFFGTQDDTNRDKLRKQQMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMSTA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo16988.1Spo16988.1mRNA


Homology
[Close]
BLAST of Spo16988.1 vs. NCBI nr
Match: gi|902222046|gb|KNA19081.1| (hypothetical protein SOVF_064880 [Spinacia oleracea])

HSP 1 Score: 196.1 bits (497), Expect = 3.000e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

		  

Query: 1   MQYKSRLLSKPPVAAGGGVHMRIKRRDTPAASTSSPSLKGLALLFFGTQDDTNRDKLRKQ 60
           MQYKSRLLSKPPVAAGGGVHMRIKRRDTPAASTSSPSLKGLALLFFGTQDDTNRDKLRKQ
Sbjct: 1   MQYKSRLLSKPPVAAGGGVHMRIKRRDTPAASTSSPSLKGLALLFFGTQDDTNRDKLRKQ 60

Query: 61  QMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMSTA 100
           QMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMSTA
Sbjct: 61  QMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMSTA 99
[Close]
BLAST of Spo16988.1 vs. NCBI nr
Match: gi|870861753|gb|KMT13023.1| (hypothetical protein BVRB_4g087380 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 125.2 bits (313), Expect = 6.500e-26
Identity = 75/119 (63.03%), Postives = 84/119 (70.59%), Query Frame = 1 

		  

Query: 1   MQYKSRLLSKPPVAAGGGVHMRIKRRD-TPAAS-------------------TSSPSLKG 60
           MQYKSRL SKPP A  GGV MRI+RR+ TP+ S                   T+S + KG
Sbjct: 1   MQYKSRLSSKPP-APTGGVQMRIRRREITPSPSGAKPGSINPTSTSVSTKQTTNSSASKG 60

Query: 61  LALLFFGTQDDTNRDKLRKQQMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMSTA 100
           L L+FFGTQD +   KLR QQMMKELLIKRALSPPP+RLTLRWR+FQ TPSRLSMMSTA
Sbjct: 61  LELMFFGTQDYSYGGKLRTQQMMKELLIKRALSPPPKRLTLRWRHFQATPSRLSMMSTA 118
[Close]
BLAST of Spo16988.1 vs. NCBI nr
Match: gi|870868218|gb|KMT19070.1| (hypothetical protein BVRB_1g014690 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 96.7 bits (239), Expect = 2.500e-17
Identity = 61/105 (58.10%), Postives = 75/105 (71.43%), Query Frame = 1 

		  

Query: 1   MQYKSRLLSKPPVAAGGGVHMRIKR-------RDTPAASTSSPSLKGLALLFFGTQDDTN 60
           ++ K +LL+KP  AAGG   M+I R       R+ PA    S + KGLAL+  G QD  +
Sbjct: 5   IENKRQLLAKPR-AAGGRAQMKIYRHRSMITKREVPAGG--SDAFKGLALVLHGIQDLCD 64

Query: 61  RDKLRKQQMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMST 99
            DK+RKQQMM E+LI+RALSPPP+RLTLRWR F+PTPSRLSMMST
Sbjct: 65  -DKMRKQQMM-EILIRRALSPPPKRLTLRWRNFRPTPSRLSMMST 104
[Close]
BLAST of Spo16988.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RHV6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_064880 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.100e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

		  

Query: 1   MQYKSRLLSKPPVAAGGGVHMRIKRRDTPAASTSSPSLKGLALLFFGTQDDTNRDKLRKQ 60
           MQYKSRLLSKPPVAAGGGVHMRIKRRDTPAASTSSPSLKGLALLFFGTQDDTNRDKLRKQ
Sbjct: 1   MQYKSRLLSKPPVAAGGGVHMRIKRRDTPAASTSSPSLKGLALLFFGTQDDTNRDKLRKQ 60

Query: 61  QMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMSTA 100
           QMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMSTA
Sbjct: 61  QMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMSTA 99
[Close]
BLAST of Spo16988.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CLX7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g087380 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.500e-26
Identity = 75/119 (63.03%), Postives = 84/119 (70.59%), Query Frame = 1 

		  

Query: 1   MQYKSRLLSKPPVAAGGGVHMRIKRRD-TPAAS-------------------TSSPSLKG 60
           MQYKSRL SKPP A  GGV MRI+RR+ TP+ S                   T+S + KG
Sbjct: 1   MQYKSRLSSKPP-APTGGVQMRIRRREITPSPSGAKPGSINPTSTSVSTKQTTNSSASKG 60

Query: 61  LALLFFGTQDDTNRDKLRKQQMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMSTA 100
           L L+FFGTQD +   KLR QQMMKELLIKRALSPPP+RLTLRWR+FQ TPSRLSMMSTA
Sbjct: 61  LELMFFGTQDYSYGGKLRTQQMMKELLIKRALSPPPKRLTLRWRHFQATPSRLSMMSTA 118
[Close]
BLAST of Spo16988.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CZ68_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g014690 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.700e-17
Identity = 61/105 (58.10%), Postives = 75/105 (71.43%), Query Frame = 1 

		  

Query: 1   MQYKSRLLSKPPVAAGGGVHMRIKR-------RDTPAASTSSPSLKGLALLFFGTQDDTN 60
           ++ K +LL+KP  AAGG   M+I R       R+ PA    S + KGLAL+  G QD  +
Sbjct: 5   IENKRQLLAKPR-AAGGRAQMKIYRHRSMITKREVPAGG--SDAFKGLALVLHGIQDLCD 64

Query: 61  RDKLRKQQMMKELLIKRALSPPPRRLTLRWRYFQPTPSRLSMMST 99
            DK+RKQQMM E+LI+RALSPPP+RLTLRWR F+PTPSRLSMMST
Sbjct: 65  -DKMRKQQMM-EILIRRALSPPPKRLTLRWRNFRPTPSRLSMMST 104
The following BLAST results are available for this feature:
BLAST of Spo16988.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902222046|gb|KNA19081.1|3.0e-47100.hypothetical protein SOVF_0648... [more]
gi|870861753|gb|KMT13023.1|6.5e-2663.0hypothetical protein BVRB_4g08... [more]
gi|870868218|gb|KMT19070.1|2.5e-1758.1hypothetical protein BVRB_1g01... [more]
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BLAST of Spo16988.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9RHV6_SPIOL2.1e-47100.Uncharacterized protein OS=Spi... [more]
A0A0J8CLX7_BETVU4.5e-2663.0Uncharacterized protein OS=Bet... [more]
A0A0J8CZ68_BETVU1.7e-1758.1Uncharacterized protein OS=Bet... [more]
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BLAST of Spo16988.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo16988.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046339 diacylglycerol metabolic process
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0009966 regulation of signal transduction
biological_process GO:0007275 multicellular organism development
biological_process GO:0010413 glucuronoxylan metabolic process
biological_process GO:0045492 xylan biosynthetic process
biological_process GO:0009741 response to brassinosteroid
biological_process GO:0016310 phosphorylation
biological_process GO:0006857 oligopeptide transport
biological_process GO:0015706 nitrate transport
biological_process GO:0010167 response to nitrate
biological_process GO:0071555 cell wall organization
biological_process GO:0006073 cellular glucan metabolic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0002213 defense response to insect
biological_process GO:0050832 defense response to fungus
biological_process GO:0006152 purine nucleoside catabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006218 uridine catabolic process
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0035556 intracellular signal transduction
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005829 cytosol
cellular_component GO:0000785 chromatin
cellular_component GO:0048046 apoplast
cellular_component GO:0016020 membrane
cellular_component GO:0005834 heterotrimeric G-protein complex
cellular_component GO:0005618 cell wall
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0045437 uridine nucleosidase activity
molecular_function GO:0047724 inosine nucleosidase activity
molecular_function GO:0047622 adenosine nucleosidase activity
molecular_function GO:0004871 obsolete signal transducer activity
molecular_function GO:0004435 phosphatidylinositol phospholipase C activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function GO:0003682 chromatin binding
molecular_function GO:0016798 hydrolase activity, acting on glycosyl bonds
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0016762 xyloglucan:xyloglucosyl transferase activity
molecular_function GO:0016301 kinase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups
molecular_function GO:0072585 xanthosine nucleotidase activity
RNA-Seq Expression