Spo16969 (gene)

Overview
NameSpo16969
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionDNA-directed RNA polymerase II subunit rpb4
Locationchr6 : 22646343 .. 22646759 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGGCGAAGAAGAAGAGAACGCATCCGAGTTAAAACTGGGCGAAGATTTCGTGAAGGCAAAGTGTTTGATGAACGGAGAAGTAGCCATGATTCTTGAACACAGGTTAGAGCAATTGCAACAAGTTTCTGATGATCCACTAAATCAAATGCCTCAAGTTTTCGAGAAATCTCTGCAATATGTCAAGCGATTCAGCCGTTACAAGAACCCAGATGCTGTGAGACAGGTTAGGGAAATCCTTAGCCGCCATGAATTAGCCGAATTCGAGCTTTCAGTTCTTGGTAATCTTTGCCCTGAAACTGTTGAGGAAGCCATTGCTATGGTGCCGTCCCTTAAGGATAAAGGAAGAGATCTTGATGATGAAGCAATTGAAAAGATGCTTACTGATCTTGCTCTTGTGAAGAAGTTTGAGTAA

mRNA sequence

ATGTCAGGCGAAGAAGAAGAGAACGCATCCGAGTTAAAACTGGGCGAAGATTTCGTGAAGGCAAAGTGTTTGATGAACGGAGAAGTAGCCATGATTCTTGAACACAGGTTAGAGCAATTGCAACAAGTTTCTGATGATCCACTAAATCAAATGCCTCAAGTTTTCGAGAAATCTCTGCAATATGTCAAGCGATTCAGCCGTTACAAGAACCCAGATGCTGTGAGACAGGTTAGGGAAATCCTTAGCCGCCATGAATTAGCCGAATTCGAGCTTTCAGTTCTTGGTAATCTTTGCCCTGAAACTGTTGAGGAAGCCATTGCTATGGTGCCGTCCCTTAAGGATAAAGGAAGAGATCTTGATGATGAAGCAATTGAAAAGATGCTTACTGATCTTGCTCTTGTGAAGAAGTTTGAGTAA

Coding sequence (CDS)

ATGTCAGGCGAAGAAGAAGAGAACGCATCCGAGTTAAAACTGGGCGAAGATTTCGTGAAGGCAAAGTGTTTGATGAACGGAGAAGTAGCCATGATTCTTGAACACAGGTTAGAGCAATTGCAACAAGTTTCTGATGATCCACTAAATCAAATGCCTCAAGTTTTCGAGAAATCTCTGCAATATGTCAAGCGATTCAGCCGTTACAAGAACCCAGATGCTGTGAGACAGGTTAGGGAAATCCTTAGCCGCCATGAATTAGCCGAATTCGAGCTTTCAGTTCTTGGTAATCTTTGCCCTGAAACTGTTGAGGAAGCCATTGCTATGGTGCCGTCCCTTAAGGATAAAGGAAGAGATCTTGATGATGAAGCAATTGAAAAGATGCTTACTGATCTTGCTCTTGTGAAGAAGTTTGAGTAA

Protein sequence

MSGEEEENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQYVKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLDDEAIEKMLTDLALVKKFE
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo16969.1Spo16969.1mRNA


Homology
[Close]
BLAST of Spo16969.1 vs. NCBI nr
Match: gi|902205476|gb|KNA15168.1| (hypothetical protein SOVF_100230 [Spinacia oleracea])

HSP 1 Score: 267.7 bits (683), Expect = 1.100e-68
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 

		  

Query: 1   MSGEEEENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQ 60
           MSGEEEENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQ
Sbjct: 1   MSGEEEENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLD 120
           YVKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLD 120

Query: 121 DEAIEKMLTDLALVKKFE 139
           DEAIEKMLTDLALVKKFE
Sbjct: 121 DEAIEKMLTDLALVKKFE 138
[Close]
BLAST of Spo16969.1 vs. NCBI nr
Match: gi|731347082|ref|XP_010684798.1| (PREDICTED: DNA-directed RNA polymerase II subunit 4 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 256.1 bits (653), Expect = 3.400e-65
Identity = 131/138 (94.93%), Postives = 135/138 (97.83%), Query Frame = 1 

		  

Query: 1   MSGEEEENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQ 60
           MSGEEEENA+ELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVS+DPLNQMPQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSEDPLNQMPQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLD 120
           YVKRFSRYKN DAVRQVREILSRH+LAEFEL VLGNLCPETVEEAIAMVPSLKDKGRDLD
Sbjct: 61  YVKRFSRYKNQDAVRQVREILSRHQLAEFELGVLGNLCPETVEEAIAMVPSLKDKGRDLD 120

Query: 121 DEAIEKMLTDLALVKKFE 139
           DEAI+KML DLALVKKFE
Sbjct: 121 DEAIDKMLNDLALVKKFE 138
[Close]
BLAST of Spo16969.1 vs. NCBI nr
Match: gi|224083811|ref|XP_002307132.1| (hypothetical protein POPTR_0005s08690g [Populus trichocarpa])

HSP 1 Score: 231.1 bits (588), Expect = 1.200e-57
Identity = 116/138 (84.06%), Postives = 130/138 (94.20%), Query Frame = 1 

		  

Query: 1   MSGEEEENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQ 60
           MSGEEEENA+ELK+G+DF+KAKCLMN EVA+ILEH+ EQLQQ+SDDP+NQ+ QVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDDFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLD 120
           YVKRFSRYKNPDAVRQVREILSR++LAEFEL VLGNLCPETVEEAIAMVPS+K KGR  D
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120

Query: 121 DEAIEKMLTDLALVKKFE 139
           DEAIEKML DL+L+KKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
[Close]
BLAST of Spo16969.1 vs. NCBI nr
Match: gi|802759611|ref|XP_012089384.1| (PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas])

HSP 1 Score: 230.7 bits (587), Expect = 1.500e-57
Identity = 116/138 (84.06%), Postives = 130/138 (94.20%), Query Frame = 1 

		  

Query: 1   MSGEEEENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQ 60
           MSGEEEENASELK+G++F+KAKCLMN EVA+ILEH+ EQLQQ+SDDP+NQ+ QVFEKSLQ
Sbjct: 1   MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLD 120
           YVKRFSRYKNPDAVRQVREILSR++LAEFEL VLGNLCPETVEEAIAMVPS+K KGR  D
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120

Query: 121 DEAIEKMLTDLALVKKFE 139
           DEAIEKML DL+L+KKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
[Close]
BLAST of Spo16969.1 vs. NCBI nr
Match: gi|225446712|ref|XP_002282413.1| (PREDICTED: DNA-directed RNA polymerase II subunit 4 [Vitis vinifera])

HSP 1 Score: 229.9 bits (585), Expect = 2.600e-57
Identity = 116/138 (84.06%), Postives = 130/138 (94.20%), Query Frame = 1 

		  

Query: 1   MSGEEEENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQ 60
           MSGEEEENA+ELK+G++F+KAKCLMN EVA+ILEH+ EQLQQ+SDDPLNQ+ QVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVAVILEHKYEQLQQMSDDPLNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLD 120
           YVKRFSRYKNPDAVRQVREILSR++LAEFEL VLGNLCPETVEEAIAMVPS+K KGR  D
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120

Query: 121 DEAIEKMLTDLALVKKFE 139
           DEAIEKML DL+L+KKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
[Close]
BLAST of Spo16969.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6N5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_100230 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 7.900e-69
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 

		  

Query: 1   MSGEEEENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQ 60
           MSGEEEENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQ
Sbjct: 1   MSGEEEENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLD 120
           YVKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLD
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLD 120

Query: 121 DEAIEKMLTDLALVKKFE 139
           DEAIEKMLTDLALVKKFE
Sbjct: 121 DEAIEKMLTDLALVKKFE 138
[Close]
BLAST of Spo16969.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C0F0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g166230 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.400e-65
Identity = 131/138 (94.93%), Postives = 135/138 (97.83%), Query Frame = 1 

		  

Query: 1   MSGEEEENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQ 60
           MSGEEEENA+ELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVS+DPLNQMPQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSEDPLNQMPQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLD 120
           YVKRFSRYKN DAVRQVREILSRH+LAEFEL VLGNLCPETVEEAIAMVPSLKDKGRDLD
Sbjct: 61  YVKRFSRYKNQDAVRQVREILSRHQLAEFELGVLGNLCPETVEEAIAMVPSLKDKGRDLD 120

Query: 121 DEAIEKMLTDLALVKKFE 139
           DEAI+KML DLALVKKFE
Sbjct: 121 DEAIDKMLNDLALVKKFE 138
[Close]
BLAST of Spo16969.1 vs. UniProtKB/TrEMBL
Match: B9H5K4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s08690g PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 8.200e-58
Identity = 116/138 (84.06%), Postives = 130/138 (94.20%), Query Frame = 1 

		  

Query: 1   MSGEEEENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQ 60
           MSGEEEENA+ELK+G+DF+KAKCLMN EVA+ILEH+ EQLQQ+SDDP+NQ+ QVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDDFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLD 120
           YVKRFSRYKNPDAVRQVREILSR++LAEFEL VLGNLCPETVEEAIAMVPS+K KGR  D
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120

Query: 121 DEAIEKMLTDLALVKKFE 139
           DEAIEKML DL+L+KKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
[Close]
BLAST of Spo16969.1 vs. UniProtKB/TrEMBL
Match: B9S7P5_RICCO (DNA-directed RNA polymerase II, putative OS=Ricinus communis GN=RCOM_0610380 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.800e-57
Identity = 115/138 (83.33%), Postives = 131/138 (94.93%), Query Frame = 1 

		  

Query: 1   MSGEEEENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQ 60
           MSGEEEENASELK+G++F+KAKCLMN EVA+ILEH+ EQLQQ+S+DP+NQ+ QVFEKSLQ
Sbjct: 1   MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSNDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLD 120
           YVKRFSRYKNPDAVRQVREILSR++LAEFEL VLGNLCPETVEEAIAMVPS+K KGR  D
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120

Query: 121 DEAIEKMLTDLALVKKFE 139
           DEAIEKMLTDL+++KKFE
Sbjct: 121 DEAIEKMLTDLSMIKKFE 138
[Close]
BLAST of Spo16969.1 vs. UniProtKB/TrEMBL
Match: A5APH2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01400 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.800e-57
Identity = 116/138 (84.06%), Postives = 130/138 (94.20%), Query Frame = 1 

		  

Query: 1   MSGEEEENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQ 60
           MSGEEEENA+ELK+G++F+KAKCLMN EVA+ILEH+ EQLQQ+SDDPLNQ+ QVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVAVILEHKYEQLQQMSDDPLNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLD 120
           YVKRFSRYKNPDAVRQVREILSR++LAEFEL VLGNLCPETVEEAIAMVPS+K KGR  D
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120

Query: 121 DEAIEKMLTDLALVKKFE 139
           DEAIEKML DL+L+KKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
[Close]
BLAST of Spo16969.1 vs. ExPASy Swiss-Prot
Match: NRPB4_ARATH (DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana GN=NRPB4 PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.700e-59
Identity = 113/138 (81.88%), Postives = 129/138 (93.48%), Query Frame = 1 

		  

Query: 1   MSGEEEENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQ 60
           MSGEEEENA+ELK+G++F+KAKCLMN EV++ILEH+ EQLQQ+S+DP+NQ+ QVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLD 120
           YVKRFSRYKNPDAVRQVREILSRH+L EFEL VLGNLCPETVEEA+AMVPSLK KGR  D
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHD 120

Query: 121 DEAIEKMLTDLALVKKFE 139
           DEAIEKML DL+LVK+FE
Sbjct: 121 DEAIEKMLNDLSLVKRFE 138
[Close]
BLAST of Spo16969.1 vs. ExPASy Swiss-Prot
Match: RPB4_HUMAN (DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens GN=POLR2D PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.600e-22
Identity = 55/137 (40.15%), Postives = 92/137 (67.15%), Query Frame = 1 

		  

Query: 2   SGEEEENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQY 61
           +G+ EE+AS+L   ++F  A+ L+N EV M+LEHR +Q +   D+   ++ +VF K+L Y
Sbjct: 10  AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 69

Query: 62  VKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLDD 121
             RFSR+KN + +  VR +L + +L +FEL+ L NLCPET EE+ A++PSL+ +    +D
Sbjct: 70  TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FED 129

Query: 122 EAIEKMLTDLALVKKFE 139
           E ++++L D+   + F+
Sbjct: 130 EELQQILDDIQTKRSFQ 141
[Close]
BLAST of Spo16969.1 vs. ExPASy Swiss-Prot
Match: RPB4_MOUSE (DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus GN=Polr2d PE=1 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 1.600e-22
Identity = 55/137 (40.15%), Postives = 92/137 (67.15%), Query Frame = 1 

		  

Query: 2   SGEEEENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQY 61
           +G+ EE+AS+L   ++F  A+ L+N EV M+LEHR +Q +   D+   ++ +VF K+L Y
Sbjct: 10  AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNY 69

Query: 62  VKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLDD 121
             RFSR+KN + +  VR +L + +L +FEL+ L NLCPET EE+ A++PSL+ +    +D
Sbjct: 70  TARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FED 129

Query: 122 EAIEKMLTDLALVKKFE 139
           E ++++L D+   + F+
Sbjct: 130 EELQQILDDIQTKRSFQ 141
[Close]
BLAST of Spo16969.1 vs. ExPASy Swiss-Prot
Match: RPB4_DICDI (DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum GN=polr2d PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.200e-19
Identity = 55/147 (37.41%), Postives = 89/147 (60.54%), Query Frame = 1 

		  

Query: 4   EEEENASELKLGEDFVKAKCLMNGEVAMILEHRL-------------EQLQQVSDDPLNQ 63
           +EEE+ + LK   D   AK L+N EVA++LEHR                L  +  + +N 
Sbjct: 12  QEEEDLTTLKFPRDLKDAKFLLNSEVAILLEHRKGISESEGTEFPQNTLLIHLYYNSIND 71

Query: 64  MPQVFEKSLQYVKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVP 123
           + + F K+L Y ++FSRYKN  +++QVR  LS+  L EFE++ L NLCPE  +EA +++P
Sbjct: 72  IIRTFHKTLAYAEKFSRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIP 131

Query: 124 SLKDKGRDLDDEAIEKMLTDLALVKKF 138
           SLK     ++D+ ++ +L +L+ ++KF
Sbjct: 132 SLK----KMEDDELQAILDELSNLRKF 154
[Close]
BLAST of Spo16969.1 vs. ExPASy Swiss-Prot
Match: RPB4_DROME (DNA-directed RNA polymerase II 16 kDa polypeptide OS=Drosophila melanogaster GN=Rpb4 PE=2 SV=5)

HSP 1 Score: 86.7 bits (213), Expect = 2.200e-16
Identity = 44/133 (33.08%), Postives = 81/133 (60.90%), Query Frame = 1 

		  

Query: 6   EENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQYVKRF 65
           +E+A++L+  ++F  A+ L+  EV M+L+HR  Q +   ++   +  +VF K+  Y   F
Sbjct: 11  DEDAADLQFPKEFENAETLLISEVHMLLDHRKRQNESADEE--QEFSEVFMKTYAYTDSF 70

Query: 66  SRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLDDEAIE 125
            ++KN + +   R +L + +L +FEL+ LGNLCPE  EEA A++PSL+ +    +DE + 
Sbjct: 71  RKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELR 130

Query: 126 KMLTDLALVKKFE 139
           ++L D+   +  +
Sbjct: 131 QILDDIGTKRSLQ 138
[Close]
BLAST of Spo16969.1 vs. TAIR (Arabidopsis)
Match: AT5G09920.1 (RNA polymerase II, Rpb4, core protein)

HSP 1 Score: 228.4 bits (581), Expect = 2.700e-60
Identity = 113/138 (81.88%), Postives = 129/138 (93.48%), Query Frame = 1 

		  

Query: 1   MSGEEEENASELKLGEDFVKAKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQ 60
           MSGEEEENA+ELK+G++F+KAKCLMN EV++ILEH+ EQLQQ+S+DP+NQ+ QVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQ 60

Query: 61  YVKRFSRYKNPDAVRQVREILSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLD 120
           YVKRFSRYKNPDAVRQVREILSRH+L EFEL VLGNLCPETVEEA+AMVPSLK KGR  D
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHD 120

Query: 121 DEAIEKMLTDLALVKKFE 139
           DEAIEKML DL+LVK+FE
Sbjct: 121 DEAIEKMLNDLSLVKRFE 138
[Close]
BLAST of Spo16969.1 vs. TAIR (Arabidopsis)
Match: AT4G15950.1 (RNA polymerase II, Rpb4, core protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.100e-13
Identity = 40/118 (33.90%), Postives = 75/118 (63.56%), Query Frame = 1 

		  

Query: 21  AKCLMNGEVAMILEHRLEQLQQVSDDPLNQMPQVFEKSLQYVKRFSRYKNPDAVRQVREI 80
           A+C+M+ E   IL+    QL  +S+DP  ++P  ++++L YV+    Y NP +VR+V E 
Sbjct: 89  AECMMDCEAFQILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEP 148

Query: 81  LSRHELAEFELSVLGNLCPETVEEAIAMVPSLKDKGRDLDDEAIEKMLTDLALVKKFE 139
           L  + +++ E+ V+ N   E+V+E +A +PSLK K +++ ++ ++  L +L+ +KK E
Sbjct: 149 LKTYGISDGEMCVIANASSESVDEVLAFIPSLKTK-KEVINQPLQDALEELSKLKKSE 205
The following BLAST results are available for this feature:
BLAST of Spo16969.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902205476|gb|KNA15168.1|1.1e-68100.hypothetical protein SOVF_1002... [more]
gi|731347082|ref|XP_010684798.1|3.4e-6594.9PREDICTED: DNA-directed RNA po... [more]
gi|224083811|ref|XP_002307132.1|1.2e-5784.0hypothetical protein POPTR_000... [more]
gi|802759611|ref|XP_012089384.1|1.5e-5784.0PREDICTED: DNA-directed RNA po... [more]
gi|225446712|ref|XP_002282413.1|2.6e-5784.0PREDICTED: DNA-directed RNA po... [more]
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BLAST of Spo16969.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R6N5_SPIOL7.9e-69100.Uncharacterized protein OS=Spi... [more]
A0A0J8C0F0_BETVU2.4e-6594.9Uncharacterized protein OS=Bet... [more]
B9H5K4_POPTR8.2e-5884.0Uncharacterized protein OS=Pop... [more]
B9S7P5_RICCO1.8e-5783.3DNA-directed RNA polymerase II... [more]
A5APH2_VITVI1.8e-5784.0Putative uncharacterized prote... [more]
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BLAST of Spo16969.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NRPB4_ARATH4.7e-5981.8DNA-directed RNA polymerase II... [more]
RPB4_HUMAN1.6e-2240.1DNA-directed RNA polymerase II... [more]
RPB4_MOUSE1.6e-2240.1DNA-directed RNA polymerase II... [more]
RPB4_DICDI2.2e-1937.4DNA-directed RNA polymerase II... [more]
RPB4_DROME2.2e-1633.0DNA-directed RNA polymerase II... [more]
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BLAST of Spo16969.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G09920.12.7e-6081.8RNA polymerase II, Rpb4, core ... [more]
AT4G15950.11.1e-1333.9RNA polymerase II, Rpb4, core ... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005574RNA polymerase II, Rpb4PFAMPF03874RNA_pol_Rpb4coord: 23..132
score: 2.4
IPR006590RNA polymerase II, Rpb4, coreSMARTSM00657rpol4neu2coord: 16..138
score: 7.2
IPR010997HRDC-likeunknownSSF47819HRDC-likecoord: 3..132
score: 2.18
NoneNo IPR availablePANTHERPTHR21297DNA-DIRECTED RNA POLYMERASE IIcoord: 1..138
score: 9.3

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031990 mRNA export from nucleus in response to heat stress
biological_process GO:0006833 water transport
biological_process GO:0010099 regulation of photomorphogenesis
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0005513 detection of calcium ion
biological_process GO:0019722 calcium-mediated signaling
biological_process GO:0006084 acetyl-CoA metabolic process
biological_process GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0010951 negative regulation of endopeptidase activity
biological_process GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
biological_process GO:0007033 vacuole organization
biological_process GO:0006486 protein glycosylation
biological_process GO:0009651 response to salt stress
biological_process GO:0009750 response to fructose
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0007030 Golgi organization
biological_process GO:0006816 calcium ion transport
biological_process GO:0006468 protein phosphorylation
biological_process GO:0001510 RNA methylation
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0042545 cell wall modification
biological_process GO:0009612 response to mechanical stimulus
biological_process GO:0006508 proteolysis
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0045900 negative regulation of translational elongation
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0032940 secretion by cell
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0008152 metabolic process
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0006950 response to stress
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0010332 response to gamma radiation
biological_process GO:0006302 double-strand break repair
biological_process GO:0006465 signal peptide processing
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0044237 cellular metabolic process
biological_process GO:0043248 proteasome assembly
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006096 glycolytic process
biological_process GO:0046686 response to cadmium ion
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0006886 intracellular protein transport
biological_process GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process GO:0016567 protein ubiquitination
biological_process GO:0043090 amino acid import
biological_process GO:0048767 root hair elongation
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0015031 protein transport
biological_process GO:0006890 retrograde vesicle-mediated transport, Golgi to ER
biological_process GO:0042023 DNA endoreduplication
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0009640 photomorphogenesis
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0000338 protein deneddylation
biological_process GO:0051604 protein maturation
biological_process GO:0051302 regulation of cell division
biological_process GO:0051510 regulation of unidimensional cell growth
biological_process GO:0009735 response to cytokinin
biological_process GO:0051788 response to misfolded protein
biological_process GO:0009407 toxin catabolic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0045948 positive regulation of translational initiation
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0010090 trichome morphogenesis
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0034402 recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
biological_process GO:0009853 photorespiration
cellular_component GO:0005768 endosome
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0000932 P-body
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0030126 COPI vesicle coat
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005665 DNA-directed RNA polymerase II, core complex
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005730 nucleolus
cellular_component GO:0009507 chloroplast
cellular_component GO:0005786 signal recognition particle, endoplasmic reticulum targeting
cellular_component GO:0045277 respiratory chain complex IV
cellular_component GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005618 cell wall
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005746 mitochondrial respiratory chain
cellular_component GO:0000502 proteasome complex
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005829 cytosol
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005787 signal peptidase complex
cellular_component GO:0016020 membrane
cellular_component GO:0005795 Golgi stack
cellular_component GO:0005839 proteasome core complex
cellular_component GO:0009506 plasmodesma
molecular_function GO:0008565 protein transporter activity
molecular_function GO:0004298 threonine-type endopeptidase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0008233 peptidase activity
molecular_function GO:0016881 acid-amino acid ligase activity
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003697 single-stranded DNA binding
molecular_function GO:0003727 single-stranded RNA binding
molecular_function GO:0031369 translation initiation factor binding
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0032440 2-alkenal reductase [NAD(P)] activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005484 SNAP receptor activity
molecular_function GO:0008312 7S RNA binding
molecular_function GO:0030942 endoplasmic reticulum signal peptide binding
molecular_function GO:0005047 signal recognition particle binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004518 nuclease activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005198 structural molecule activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo131070.74Barchart | Table
Spo187750.72Barchart | Table
Spo270820.72Barchart | Table
Spo242550.72Barchart | Table
Spo012430.71Barchart | Table
Spo096040.71Barchart | Table
Spo280980.71Barchart | Table
Spo057310.70Barchart | Table
Spo020850.70Barchart | Table
Spo022720.69Barchart | Table
Spo222560.69Barchart | Table
Spo019140.69Barchart | Table
Spo005790.69Barchart | Table
Spo145370.69Barchart | Table
Spo013970.69Barchart | Table
Spo119510.69Barchart | Table
Spo087590.68Barchart | Table
Spo116230.68Barchart | Table
Spo167860.68Barchart | Table
Spo176790.68Barchart | Table
Spo185750.68Barchart | Table
Spo198980.68Barchart | Table
Spo200710.68Barchart | Table
Spo230710.67Barchart | Table
Spo114310.67Barchart | Table
Spo173910.67Barchart | Table
Spo264820.67Barchart | Table
Spo225830.67Barchart | Table
Spo134900.67Barchart | Table
Spo087990.67Barchart | Table
Spo096740.67Barchart | Table
Spo227600.67Barchart | Table
Spo076510.67Barchart | Table
Spo211750.67Barchart | Table
Spo206860.66Barchart | Table
Spo113170.66Barchart | Table
Spo127490.66Barchart | Table
Spo128940.66Barchart | Table
Spo150870.66Barchart | Table
Spo162970.66Barchart | Table
Spo163390.66Barchart | Table
Spo061460.66Barchart | Table
Spo056630.66Barchart | Table
Spo081970.66Barchart | Table
Spo271020.66Barchart | Table
Spo055310.66Barchart | Table
Spo097520.66Barchart | Table
Spo097640.66Barchart | Table
Spo098030.66Barchart | Table
Spo107130.66Barchart | Table
Spo117330.65Barchart | Table
Spo208260.65Barchart | Table
Spo090150.65Barchart | Table
Spo122850.65Barchart | Table
Spo093270.65Barchart | Table