Spo16821 (gene)

Overview
NameSpo16821
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionChlorophyll a-b binding protein 1, chloroplastic (Chlorophyll a-b protein 140) (CAB-140) (LHCII type I CAB-1) (Precursor)
Locationchr1 : 6395434 .. 6397816 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAACGCCTTAATGAGTTGCGGCATCGCCGCCGTGTTCCCGTCTTCTCTATCTTCTTCAAAGTCTAAGTTCGCCGCCTCCGTACCGTTGGGTAATGTGTCGTGCAATGCCTCTTCACGGTTCACCATGTCGGCTGAATGGATGCCCGGTCAGCCCAGGCCCGCCCATCTTGATGGATCAGCTCCAGGGTATGTATTCATTTATTTTACTTATATTTATAATTTTTACAAATTACAATTTAATTTAATTGGTTCACTTCACCCATTATAAGTGTACATTTTATTCCCGATTGATTACATTAAAAATCATAATTACATACCTAAATCATGATTGAATGCTATCTTTATAATTTTGTCTTATTATATTTTGTTTGGGAAAAGAAGACATAAACTTTGTAACTAGTTGATGATATTATTAGACTTTCAAACATGTTTATCATTGATAATTAAAGCACTATAAAGTTAGTAATGAGTATGGATTGTACAGTGACTTTGGATTTGACCCACTTGGGCTTGGAGAAGTTCCAGAGAATCTGGAGAGATTTAAGGAGTCCGAGCTCATCCATTGCAGATGGGCAATGCTTGCAGTTGTAAGTATTTATTCTGCCTTCCTTATGTGTCCCAATATAATTTAATACTTCTTGTTGGACTTTGTTTTCGTCATCTATAATAAAATAAGGAATTTACTTTAGTTTGATCGGGTTGTTTTATATGCTAATCTTTGTGGTCTGGTCTATTGAGTTTGATTTTGATTTTGATTTTGAGTTTGATTTTGATTTTGATTTTGAGTTTGATTTTGATTTTGATTTTGATTTTGATTTTGATTTTGATTTTGATTTTTGGCTAGCGGATATATATAAAAGAAATGGAGAGAGTAATAAAATATGAGAAGAGATACGTGAGGACCACATACTATAACAATATCAAAATCTTATAATTTTTACTAACACAGTAATTAAAGATAGGCAAATGTGCCAAAGGAAAAGGAAAAGGAAAAGGAAAATGAGAAGAACTTTCGGAAACGGGAGGGAGTACTAAATTGTGATAAACTCGAATCTAATTTTACAAGATGATAATGCAATTGCGTTCATCTCCAAGAATCATCAAAAGAGATTATGTGAATTAAGAGTGTATTAGTATGATAAGTTGCTGTGTTTTGACTATAATGCAATAATGCAGCCAGGGATCCTTGTACCAGAAGCGTTGGGATTAGGAAACTGGGTAAAAGCACAAGAATGGGCAGCCCTTCCAGGAGGTCAAGCAACCTACTTAGGAAACCCAGTTCCATGGGGTAACCTCCCTACTATTTTGGCTATTGAATTCTTAGCTATTGCATTCGTAGAACACCAAAGGAGTATGGAGAAAGACTCTGAGAAGAAGAAGTACCCTGGTGGAGCTTTTGATCCCTTGGGTTATTCTAAGGACCCTAAGAAGTTTGAGGAGTTGAAGCTTAAAGAGATTAAAAATGGTAAGCACATTCTTTTCTTCTCATTGTTTCACAAAACATCCTGTTAGTTAACATGTTAGCCGATGATGTCTTGGCCTAGTGGTTATTACTGAGGGTTTGTGTATACATGATAGGTCTCAACATGAGACTCTCAGGTTCAAATCCCATGGCCTAATTTGCATTGTATATTTATCCTATACGAGCCCTATATGCAAATACCCTATAACACCCCACTCCATTAATGAGATAAAGGACTGTGACCCTTTTAATATTGGAACGACCATGCTACCCATTGGACTACCCTATCCAAACCAAGCCTAGTCTCAAGTTCAATCCCCTGCCCTATTTTGCAATGCACATTTATCCTATAAGAGCCCTATATACAAATACCATATAACAACCCTGTCCATTAATAAGATAAATGACCGAGACGCTTTAATATTGGTACGACCTTGCTACGCATTGGACTACCCTGTCCAAACCAGACCTAGTCTCAGGTTCAAATCCCCTGCCCTAATTTGCAATGTATTTATCCTATAAGAGTCCTATATACAAACACCTTATAACAGCCTTGTCATTAATAAGATAAAGGACCGAGACCCTTTTAACATTGGCACGACCCTGCTACCTATTGGACTACCCTTTCCAAACCAGGCCCATTTATAATGTATATTGTCCTTTAGGATCATTTACACCCTAAAAAAAGAAAAAAACATGTTCATATGCCATATAGCATTACTCTTTTATTTAATAACTGATCGAGGGTTAATGTTAATGGTATATAGGTCGTCTAGCGTTGTTGGCATTCGTGGGGTTCTGCATTCAACAATCAGCATATCCAGGAACAGGTCCGTTGGAAAACTTGGCTACTCATTTGGCTGACCCATGGCACAACAACATCGGAGACATTGTTATCCCTAGAGCACTTTAA

mRNA sequence

ATGGCTTCCAACGCCTTAATGAGTTGCGGCATCGCCGCCGTGTTCCCGTCTTCTCTATCTTCTTCAAAGTCTAAGTTCGCCGCCTCCGTACCGTTGGGTAATGTGTCGTGCAATGCCTCTTCACGGTTCACCATGTCGGCTGAATGGATGCCCGGTCAGCCCAGGCCCGCCCATCTTGATGGATCAGCTCCAGGTGACTTTGGATTTGACCCACTTGGGCTTGGAGAAGTTCCAGAGAATCTGGAGAGATTTAAGGAGTCCGAGCTCATCCATTGCAGATGGGCAATGCTTGCAGTTCCAGGGATCCTTGTACCAGAAGCGTTGGGATTAGGAAACTGGGTAAAAGCACAAGAATGGGCAGCCCTTCCAGGAGGTCAAGCAACCTACTTAGGAAACCCAGTTCCATGGGGTAACCTCCCTACTATTTTGGCTATTGAATTCTTAGCTATTGCATTCGTAGAACACCAAAGGAGTATGGAGAAAGACTCTGAGAAGAAGAAGTACCCTGGTGGAGCTTTTGATCCCTTGGGTTATTCTAAGGACCCTAAGAAGTTTGAGGAGTTGAAGCTTAAAGAGATTAAAAATGGTCGTCTAGCGTTGTTGGCATTCGTGGGGTTCTGCATTCAACAATCAGCATATCCAGGAACAGGTCCGTTGGAAAACTTGGCTACTCATTTGGCTGACCCATGGCACAACAACATCGGAGACATTGTTATCCCTAGAGCACTTTAA

Coding sequence (CDS)

ATGGCTTCCAACGCCTTAATGAGTTGCGGCATCGCCGCCGTGTTCCCGTCTTCTCTATCTTCTTCAAAGTCTAAGTTCGCCGCCTCCGTACCGTTGGGTAATGTGTCGTGCAATGCCTCTTCACGGTTCACCATGTCGGCTGAATGGATGCCCGGTCAGCCCAGGCCCGCCCATCTTGATGGATCAGCTCCAGGTGACTTTGGATTTGACCCACTTGGGCTTGGAGAAGTTCCAGAGAATCTGGAGAGATTTAAGGAGTCCGAGCTCATCCATTGCAGATGGGCAATGCTTGCAGTTCCAGGGATCCTTGTACCAGAAGCGTTGGGATTAGGAAACTGGGTAAAAGCACAAGAATGGGCAGCCCTTCCAGGAGGTCAAGCAACCTACTTAGGAAACCCAGTTCCATGGGGTAACCTCCCTACTATTTTGGCTATTGAATTCTTAGCTATTGCATTCGTAGAACACCAAAGGAGTATGGAGAAAGACTCTGAGAAGAAGAAGTACCCTGGTGGAGCTTTTGATCCCTTGGGTTATTCTAAGGACCCTAAGAAGTTTGAGGAGTTGAAGCTTAAAGAGATTAAAAATGGTCGTCTAGCGTTGTTGGCATTCGTGGGGTTCTGCATTCAACAATCAGCATATCCAGGAACAGGTCCGTTGGAAAACTTGGCTACTCATTTGGCTGACCCATGGCACAACAACATCGGAGACATTGTTATCCCTAGAGCACTTTAA

Protein sequence

MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIPRAL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo16821.1Spo16821.1mRNA


Homology
[Close]
BLAST of Spo16821.1 vs. NCBI nr
Match: gi|902229792|gb|KNA21599.1| (hypothetical protein SOVF_041770 [Spinacia oleracea])

HSP 1 Score: 501.9 bits (1291), Expect = 6.300e-139
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 1 

		  

Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60
           MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD
Sbjct: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60

Query: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120
           GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA
Sbjct: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120

Query: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180
           ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK
Sbjct: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180

Query: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240
           DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP
Sbjct: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240

Query: 241 RAL 244
           RAL
Sbjct: 241 RAL 243
[Close]
BLAST of Spo16821.1 vs. NCBI nr
Match: gi|731363359|ref|XP_010693392.1| (PREDICTED: chlorophyll a-b binding protein 6, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 479.2 bits (1232), Expect = 4.300e-132
Identity = 231/243 (95.06%), Postives = 236/243 (97.12%), Query Frame = 1 

		  

Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60
           MASNAL SCGIAAVFPSSLSSSKSKFAASVPL N+SCN SSRFTMSAEWMPGQPRP +LD
Sbjct: 1   MASNALTSCGIAAVFPSSLSSSKSKFAASVPLVNLSCNVSSRFTMSAEWMPGQPRPPYLD 60

Query: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120
           GSAPGDFGFDPL LGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA
Sbjct: 61  GSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120

Query: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180
           ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK
Sbjct: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180

Query: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240
           DPKKFEELK+KEIKNGRLALLAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGDI+IP
Sbjct: 181 DPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDILIP 240

Query: 241 RAL 244
             L
Sbjct: 241 PTL 243
[Close]
BLAST of Spo16821.1 vs. NCBI nr
Match: gi|698553114|ref|XP_009769851.1| (PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Nicotiana sylvestris])

HSP 1 Score: 458.8 bits (1179), Expect = 6.100e-126
Identity = 218/243 (89.71%), Postives = 230/243 (94.65%), Query Frame = 1 

		  

Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60
           MAS ALMSCGIAAV PS LSSSKSKFAA+VP    + NA+SRFTMSAEWMPGQPRP++LD
Sbjct: 1   MASKALMSCGIAAVCPSVLSSSKSKFAAAVPFSAGATNATSRFTMSAEWMPGQPRPSYLD 60

Query: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120
           GSAPGDFGFDPLGLGEVP NLER+KESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA
Sbjct: 61  GSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120

Query: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180
           A+PGGQATYLG PVPWG LPTILAIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSK
Sbjct: 121 AIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSK 180

Query: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240
           DPKKFEELK+KEIKNGRLALLAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGD++IP
Sbjct: 181 DPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240

Query: 241 RAL 244
           R +
Sbjct: 241 RGI 243
[Close]
BLAST of Spo16821.1 vs. NCBI nr
Match: gi|697111283|ref|XP_009609516.1| (PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Nicotiana tomentosiformis])

HSP 1 Score: 455.3 bits (1170), Expect = 6.700e-125
Identity = 215/243 (88.48%), Postives = 229/243 (94.24%), Query Frame = 1 

		  

Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60
           MAS ALMSCGIAAV PS LSSSKSKFA +VP+   + N +SRFTMSAEWMPGQPRP++LD
Sbjct: 1   MASKALMSCGIAAVCPSVLSSSKSKFAVAVPVSAGATNGTSRFTMSAEWMPGQPRPSYLD 60

Query: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120
           GSAPGDFGFDPLGLGEVP NLER+KESELIHCRWAMLAVPGI+VPEALGLGNWVKAQEWA
Sbjct: 61  GSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWA 120

Query: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180
           A+PGGQATYLG PVPWG LPTILAIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSK
Sbjct: 121 AIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSK 180

Query: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240
           DPKKFEELK+KEIKNGRLALLAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGD++IP
Sbjct: 181 DPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240

Query: 241 RAL 244
           R +
Sbjct: 241 RGI 243
[Close]
BLAST of Spo16821.1 vs. NCBI nr
Match: gi|698491972|ref|XP_009792367.1| (PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like [Nicotiana sylvestris])

HSP 1 Score: 454.5 bits (1168), Expect = 1.100e-124
Identity = 216/243 (88.89%), Postives = 229/243 (94.24%), Query Frame = 1 

		  

Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60
           MASNALMSCGIAAV PS LSSSKSKFA +VP+   + N +SRF+MSAEWMPGQPRP +LD
Sbjct: 1   MASNALMSCGIAAVSPSVLSSSKSKFAVAVPVCVGAANGNSRFSMSAEWMPGQPRPPYLD 60

Query: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120
           GSAPGDFGFDPLGLGEVP NLER+KESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA
Sbjct: 61  GSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120

Query: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180
           A+PGGQATYLG PVPWG LPTILAIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSK
Sbjct: 121 AIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSK 180

Query: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240
           DPKKFEELK+KEIKNGRLALLAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGD++IP
Sbjct: 181 DPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240

Query: 241 RAL 244
           R +
Sbjct: 241 RGI 243
[Close]
BLAST of Spo16821.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRT4_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea GN=SOVF_041770 PE=3 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 4.400e-139
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 1 

		  

Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60
           MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD
Sbjct: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60

Query: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120
           GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA
Sbjct: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120

Query: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180
           ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK
Sbjct: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180

Query: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240
           DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP
Sbjct: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240

Query: 241 RAL 244
           RAL
Sbjct: 241 RAL 243
[Close]
BLAST of Spo16821.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BGF2_BETVU (Chlorophyll a-b binding protein, chloroplastic OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g047600 PE=3 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 3.000e-132
Identity = 231/243 (95.06%), Postives = 236/243 (97.12%), Query Frame = 1 

		  

Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60
           MASNAL SCGIAAVFPSSLSSSKSKFAASVPL N+SCN SSRFTMSAEWMPGQPRP +LD
Sbjct: 1   MASNALTSCGIAAVFPSSLSSSKSKFAASVPLVNLSCNVSSRFTMSAEWMPGQPRPPYLD 60

Query: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120
           GSAPGDFGFDPL LGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA
Sbjct: 61  GSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120

Query: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180
           ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK
Sbjct: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180

Query: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240
           DPKKFEELK+KEIKNGRLALLAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGDI+IP
Sbjct: 181 DPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDILIP 240

Query: 241 RAL 244
             L
Sbjct: 241 PTL 243
[Close]
BLAST of Spo16821.1 vs. UniProtKB/TrEMBL
Match: A0A164ZG13_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019117 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 1.400e-124
Identity = 215/244 (88.11%), Postives = 230/244 (94.26%), Query Frame = 1 

		  

Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCN-ASSRFTMSAEWMPGQPRPAHL 60
           MA+ +LMSCG+AAV+PS LSSSKSKFAA++P+  VS N ASS+F+MSAEWMPGQPRPAHL
Sbjct: 1   MAAQSLMSCGVAAVYPSVLSSSKSKFAAALPMSMVSANGASSKFSMSAEWMPGQPRPAHL 60

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGS PGDFGFDPLGL  VPEN ERFKESEL HCRWAMLAVPGILVPEALGLGNWV+AQEW
Sbjct: 61  DGSTPGDFGFDPLGLATVPENFERFKESELYHCRWAMLAVPGILVPEALGLGNWVQAQEW 120

Query: 121 AALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLGNPVPWG LPTILAIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYS
Sbjct: 121 AAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDIEKKKYPGGAFDPLGYS 180

Query: 181 KDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVI 240
           KDPKKFEE+KLKE+KNGRLA+LAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGDIVI
Sbjct: 181 KDPKKFEEMKLKEVKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 240

Query: 241 PRAL 244
           PR L
Sbjct: 241 PRGL 244
[Close]
BLAST of Spo16821.1 vs. UniProtKB/TrEMBL
Match: A0A0U2SAF3_PANGI (Chlorophyll a-b binding protein, chloroplastic OS=Panax ginseng GN=CAB5 PE=2 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 1.500e-123
Identity = 213/244 (87.30%), Postives = 231/244 (94.67%), Query Frame = 1 

		  

Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNAS-SRFTMSAEWMPGQPRPAHL 60
           MA+NALMSCGIAAVFPS LSSSKSKFAA++P   VS N + SR+TM+++WMPGQPRP +L
Sbjct: 1   MATNALMSCGIAAVFPSVLSSSKSKFAAALPQSLVSANGTTSRYTMTSDWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLGLG VPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWV+AQEW
Sbjct: 61  DGSAPGDFGFDPLGLGSVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 120

Query: 121 AALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLGNPVPWG LPTIL IEFL+IAFVEHQRSMEKDSEKKKYPGGAFDPLGYS
Sbjct: 121 AAIPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 180

Query: 181 KDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVI 240
           KDPKKFEE K+KE+KNGRLALLAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIG+++I
Sbjct: 181 KDPKKFEEYKVKEVKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGNVLI 240

Query: 241 PRAL 244
           PR L
Sbjct: 241 PRGL 244
[Close]
BLAST of Spo16821.1 vs. UniProtKB/TrEMBL
Match: A0A0A0KNM4_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_5G490820 PE=3 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 1.500e-123
Identity = 215/244 (88.11%), Postives = 226/244 (92.62%), Query Frame = 1 

		  

Query: 1   MASNALMSCGIAAV-FPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHL 60
           MASN LMSCGIA   FPS LSSSKSKFA  VP+  V+ NASSRF+MSAEWMPGQPRP +L
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLG PVPWG LPTIL IEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVI 240
           KDP+K +E K+KEIKNGRLALLAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGDI+I
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRAL 244
           PR +
Sbjct: 241 PRTI 244
[Close]
BLAST of Spo16821.1 vs. ExPASy Swiss-Prot
Match: CAB6_ARATH (Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana GN=LHCA1 PE=1 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 1.200e-121
Identity = 213/241 (88.38%), Postives = 222/241 (92.12%), Query Frame = 1 

		  

Query: 1   MASNALMSCGIAAVFPSSLSSSKSKF-AASVPLGNVSCNASSRFTMSAEWMPGQPRPAHL 60
           MASN+LMSCGIAAV+PS LSSSKSKF +A VPL N       R  M+A WMPG+PRPA+L
Sbjct: 1   MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAG--NVGRIRMAAHWMPGEPRPAYL 60

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLGLGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEW 120

Query: 121 AALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 180
           AALPGGQATYLGNPVPWG LPTILAIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYS
Sbjct: 121 AALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVI 240
           KDPKK EELK+KEIKNGRLALLAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGDIVI
Sbjct: 181 KDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 239
[Close]
BLAST of Spo16821.1 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 2.000e-121
Identity = 207/243 (85.19%), Postives = 225/243 (92.59%), Query Frame = 1 

		  

Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60
           MASN LMSCGI AV PS LSS+KSKFAA++P+   + N  SRF+MSA+WMPGQPRP++LD
Sbjct: 1   MASNTLMSCGIPAVCPSFLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYLD 60

Query: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120
           GSAPGDFGFD LGLGEVP NLER+KESELIHCRWAMLAVPGI+VPEALGLGNWVKAQEWA
Sbjct: 61  GSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWA 120

Query: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180
           A+PGGQATYLG PVPWG LPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK
Sbjct: 121 AIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180

Query: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240
           DP KFEELK+KEIKNGRLALLA VGFC+QQSAY GTGPLENLATHLADPWHNNIGD++IP
Sbjct: 181 DPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVIIP 240

Query: 241 RAL 244
           + +
Sbjct: 241 KGI 243
[Close]
BLAST of Spo16821.1 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 4.700e-110
Identity = 192/240 (80.00%), Postives = 205/240 (85.42%), Query Frame = 1 

		  

Query: 2   ASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLDG 61
           +S+ L SC    V PS L+ S     + +P    +   S R TMSAEW PGQPRPAHLDG
Sbjct: 3   SSSGLRSCSAVGV-PSLLAPSSRSGRSGLPFCAYA-TTSGRVTMSAEWFPGQPRPAHLDG 62

Query: 62  SAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAA 121
           S+PGDFGFDPLGL  VPEN ERFKESE+ HCRWAML VPG+LVPEALGLGNWVKAQEWAA
Sbjct: 63  SSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAA 122

Query: 122 LPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKD 181
           LP GQATYLGNPVPWGNLPTILAIEFLAIAF E QR+MEKD EKKKYPGGAFDPLG+SKD
Sbjct: 123 LPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKD 182

Query: 182 PKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIPR 241
           P KFEELKLKEIKNGRLA+LAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGDIVIPR
Sbjct: 183 PAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPR 240
[Close]
BLAST of Spo16821.1 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.300e-40
Identity = 103/267 (38.58%), Postives = 140/267 (52.43%), Query Frame = 1 

		  

Query: 17  SSLSSSKSKFAASVPLGNVSCNASSRFTMSAE---WMPGQPRPAHLDGSAPGDFGFDPLG 76
           S +SS+ S+F A    G    +     T+ ++   W PG   P +LDGS  GD+GFDP G
Sbjct: 20  SDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFG 79

Query: 77  LGEVPE-------------------------------------------NLERFKESELI 136
           LG+  E                                            L+RF+E ELI
Sbjct: 80  LGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELI 139

Query: 137 HCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGNLPTILAIEFLAI 196
           H RWAMLA  G +  E L    W  A +   + G  ++YLG P+P+ ++ T++ IE L I
Sbjct: 140 HGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVI 199

Query: 197 AFVEHQRSMEKDSEKKKYPGGA-FDPLGYSKDPKKFEELKLKEIKNGRLALLAFVGFCIQ 237
            ++E QR+ E DSEK+ YPGG  FDPLG + DP K  +L+L EIK+ RLA++ F+GF +Q
Sbjct: 200 GYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQ 259
[Close]
BLAST of Spo16821.1 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.100e-37
Identity = 98/246 (39.84%), Postives = 132/246 (53.66%), Query Frame = 1 

		  

Query: 9   CGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSA---EWMPGQPRPAHLDGSAPG 68
           CG+ + F   L  S  K    V    V C+ S+ F + A   EW+PG   P +L GS PG
Sbjct: 16  CGLKSRF---LGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPG 75

Query: 69  DFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGG 128
           D GFDPLGL E PENL  F ++EL++ RWAML V G+L+PE       +   +W A   G
Sbjct: 76  DNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYA--AG 135

Query: 129 QATYLGNPVPWGNLPTILAIEFLAIAFVEHQR--------SMEKDSEKKK---------Y 188
           +  Y      + +  T+  IEF+   +VE +R        S+ +D   K+         Y
Sbjct: 136 KEEY------FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGY 195

Query: 189 PGGAFDPLGYSKDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLAD 235
           PGG F+PL ++       E K KEI NGRLA+LAF+GF IQ +   G GP +NL  H++D
Sbjct: 196 PGGIFNPLNFAPT----LEAKEKEIANGRLAMLAFLGFIIQHNV-TGKGPFDNLLQHISD 245
[Close]
BLAST of Spo16821.1 vs. TAIR (Arabidopsis)
Match: AT3G54890.1 (photosystem I light harvesting complex gene 1)

HSP 1 Score: 437.2 bits (1123), Expect = 6.700e-123
Identity = 213/241 (88.38%), Postives = 222/241 (92.12%), Query Frame = 1 

		  

Query: 1   MASNALMSCGIAAVFPSSLSSSKSKF-AASVPLGNVSCNASSRFTMSAEWMPGQPRPAHL 60
           MASN+LMSCGIAAV+PS LSSSKSKF +A VPL N       R  M+A WMPG+PRPA+L
Sbjct: 1   MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAG--NVGRIRMAAHWMPGEPRPAYL 60

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLGLGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEW 120

Query: 121 AALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 180
           AALPGGQATYLGNPVPWG LPTILAIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYS
Sbjct: 121 AALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVI 240
           KDPKK EELK+KEIKNGRLALLAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGDIVI
Sbjct: 181 KDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 239
[Close]
BLAST of Spo16821.1 vs. TAIR (Arabidopsis)
Match: AT3G08940.2 (light harvesting complex photosystem II)

HSP 1 Score: 167.9 bits (424), Expect = 7.600e-42
Identity = 103/267 (38.58%), Postives = 140/267 (52.43%), Query Frame = 1 

		  

Query: 17  SSLSSSKSKFAASVPLGNVSCNASSRFTMSAE---WMPGQPRPAHLDGSAPGDFGFDPLG 76
           S +SS+ S+F A    G    +     T+ ++   W PG   P +LDGS  GD+GFDP G
Sbjct: 20  SDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFG 79

Query: 77  LGEVPE-------------------------------------------NLERFKESELI 136
           LG+  E                                            L+RF+E ELI
Sbjct: 80  LGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELI 139

Query: 137 HCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGNLPTILAIEFLAI 196
           H RWAMLA  G +  E L    W  A +   + G  ++YLG P+P+ ++ T++ IE L I
Sbjct: 140 HGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVI 199

Query: 197 AFVEHQRSMEKDSEKKKYPGGA-FDPLGYSKDPKKFEELKLKEIKNGRLALLAFVGFCIQ 237
            ++E QR+ E DSEK+ YPGG  FDPLG + DP K  +L+L EIK+ RLA++ F+GF +Q
Sbjct: 200 GYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQ 259
[Close]
BLAST of Spo16821.1 vs. TAIR (Arabidopsis)
Match: AT4G10340.1 (light harvesting complex of photosystem II 5)

HSP 1 Score: 154.5 bits (389), Expect = 8.600e-38
Identity = 83/191 (43.46%), Postives = 113/191 (59.16%), Query Frame = 1 

		  

Query: 56  PAHLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL--GNW 115
           P +L+G   GD+G+DP GLG+ PEN  +++  ELIH RWAML   G ++PEAL     N 
Sbjct: 82  PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141

Query: 116 VKAQEW-----AALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQR-SMEKDSEKKK 175
                W       L G    Y G  +P  NL   +  E + +   E+ R +   D E K 
Sbjct: 142 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVLAVVAEVVLLGGAEYYRITNGLDFEDKL 201

Query: 176 YPGGAFDPLGYSKDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLA 235
           +PGG FDPLG +KDP++   LK+KEIKNGRLA+ A +GF I Q+   G GP+ENLA HL+
Sbjct: 202 HPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFI-QAYVTGEGPVENLAKHLS 261

Query: 236 DPWHNNIGDIV 239
           DP+ NN+  ++
Sbjct: 262 DPFGNNLLTVI 270
[Close]
BLAST of Spo16821.1 vs. TAIR (Arabidopsis)
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4)

HSP 1 Score: 150.2 bits (378), Expect = 1.600e-36
Identity = 92/240 (38.33%), Postives = 130/240 (54.17%), Query Frame = 1 

		  

Query: 16  PSSLSSSKSKFAASVPLGNVSCNA-SSRFTMSA---EWMPGQPRPAHLDGSAPGDFGFDP 75
           P  L+ S  +    +   ++  +A +S F + A   EW+PG   P +L GS  GD GFDP
Sbjct: 20  PRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDP 79

Query: 76  LGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLG 135
           LGL E PENL+ F ++EL++ RWAML V G+L+PE       +   EW     G+  Y  
Sbjct: 80  LGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEW--YDAGKEQY-- 139

Query: 136 NPVPWGNLPTILAIEFLAIAFVEHQR--------SMEKDSEKKK---------YPGGAFD 195
               + +  T+  IEF+   +VE +R        S+ +D   K+         YPGG F+
Sbjct: 140 ----FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFN 199

Query: 196 PLGYSKDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNI 235
           PL ++      +E K KE+ NGRLA+LAF+GF +Q +   G GP ENL  HL+DPWHN I
Sbjct: 200 PLNFAPT----QEAKEKELANGRLAMLAFLGFVVQHNV-TGKGPFENLLQHLSDPWHNTI 246
[Close]
BLAST of Spo16821.1 vs. TAIR (Arabidopsis)
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2)

HSP 1 Score: 149.1 bits (375), Expect = 3.600e-36
Identity = 101/266 (37.97%), Postives = 135/266 (50.75%), Query Frame = 1 

		  

Query: 1   MASNALMSCGIAAVF-PSSLSSSKSKFAASVPLGNVSCNASSRFTMSAE-----WMPGQP 60
           MAS+   S  IAA+  PS L   K +    + +  VS   +S   ++A+     W PG  
Sbjct: 1   MASSLCASSAIAAISSPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGST 60

Query: 61  RPAHLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWV 120
            P  LDGS PGDFGFDPLGL   P++L+   ++E++HCRWAML   GI +PE L     +
Sbjct: 61  PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGIL 120

Query: 121 KAQEWAALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQR--------SMEKD---- 180
               W     G+  Y  +        T+  +E + I + E +R        S+  D    
Sbjct: 121 NTPSW--YTAGEQEYFTDKT------TLFVVELILIGWAEGRRWADIIKPGSVNTDPVFP 180

Query: 181 -----SEKKKYPGGA-FDPLGY-SKDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPG 240
                     YPGG  FDPLG+ S  P K +EL+ KEIKNGRLA+LA +G   Q   Y G
Sbjct: 181 NNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTG 240

Query: 241 TGPLENLATHLADPWHNNIGDIVIPR 242
           TGP++NL  HLADP H  I     P+
Sbjct: 241 TGPIDNLFAHLADPGHATIFAAFTPK 257
The following BLAST results are available for this feature:
BLAST of Spo16821.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902229792|gb|KNA21599.1|6.3e-139100.hypothetical protein SOVF_0417... [more]
gi|731363359|ref|XP_010693392.1|4.3e-13295.0PREDICTED: chlorophyll a-b bin... [more]
gi|698553114|ref|XP_009769851.1|6.1e-12689.7PREDICTED: chlorophyll a-b bin... [more]
gi|697111283|ref|XP_009609516.1|6.7e-12588.4PREDICTED: chlorophyll a-b bin... [more]
gi|698491972|ref|XP_009792367.1|1.1e-12488.8PREDICTED: chlorophyll a-b bin... [more]
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BLAST of Spo16821.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RRT4_SPIOL4.4e-139100.Chlorophyll a-b binding protei... [more]
A0A0J8BGF2_BETVU3.0e-13295.0Chlorophyll a-b binding protei... [more]
A0A164ZG13_DAUCA1.4e-12488.1Uncharacterized protein OS=Dau... [more]
A0A0U2SAF3_PANGI1.5e-12387.3Chlorophyll a-b binding protei... [more]
A0A0A0KNM4_CUCSA1.5e-12388.1Chlorophyll a-b binding protei... [more]
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BLAST of Spo16821.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CAB6_ARATH1.2e-12188.3Chlorophyll a-b binding protei... [more]
CB11_SOLLC2.0e-12185.1Chlorophyll a-b binding protei... [more]
CB121_HORVU4.7e-11080.0Chlorophyll a-b binding protei... [more]
CB4B_ARATH1.3e-4038.5Chlorophyll a-b binding protei... [more]
CB24_PEA1.1e-3739.8Chlorophyll a-b binding protei... [more]
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BLAST of Spo16821.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT3G54890.16.7e-12388.3photosystem I light harvesting... [more]
AT3G08940.27.6e-4238.5light harvesting complex photo... [more]
AT4G10340.18.6e-3843.4light harvesting complex of ph... [more]
AT3G47470.11.6e-3638.3light-harvesting chlorophyll-p... [more]
AT3G61470.13.6e-3637.9photosystem I light harvesting... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 1..241
score: 1.3E
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 56..210
score: 1.0
IPR023329Chlorophyll a/b binding protein domainGENE3D1.10.3460.10coord: 48..235
score: 6.0
IPR023329Chlorophyll a/b binding protein domainunknownSSF103511Chlorophyll a-b binding proteincoord: 39..239
score: 1.57
NoneNo IPR availablePANTHERPTHR21649:SF7CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTICcoord: 1..241
score: 1.3E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009768 photosynthesis, light harvesting in photosystem I
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0015866 ADP transport
biological_process GO:0006766 vitamin metabolic process
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0019748 secondary metabolic process
biological_process GO:0009249 protein lipoylation
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006733 oxidoreduction coenzyme metabolic process
biological_process GO:0009117 nucleotide metabolic process
biological_process GO:0009107 lipoate biosynthetic process
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0009695 jasmonic acid biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006546 glycine catabolic process
biological_process GO:0030154 cell differentiation
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0048364 root development
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0007219 Notch signaling pathway
biological_process GO:0009058 biosynthetic process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0080090 regulation of primary metabolic process
biological_process GO:0044085 cellular component biogenesis
biological_process GO:0009987 cellular process
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0015031 protein transport
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0060255 regulation of macromolecule metabolic process
biological_process GO:0015867 ATP transport
biological_process GO:0048316 seed development
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0009423 chorismate biosynthetic process
biological_process GO:0006771 riboflavin metabolic process
biological_process GO:0019497 hexachlorocyclohexane metabolic process
biological_process GO:0016311 dephosphorylation
biological_process GO:0046777 protein autophosphorylation
biological_process GO:0035970 peptidyl-threonine dephosphorylation
biological_process GO:0071482 cellular response to light stimulus
biological_process GO:0044070 regulation of anion transport
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006506 GPI anchor biosynthetic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0033587 shikimate biosynthetic process
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0048367 shoot system development
biological_process GO:0051186 cofactor metabolic process
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0009735 response to cytokinin
biological_process GO:0030001 metal ion transport
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0016043 cellular component organization
biological_process GO:0019682 glyceraldehyde-3-phosphate metabolic process
biological_process GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:1901564 organonitrogen compound metabolic process
biological_process GO:0009639 response to red or far red light
biological_process GO:0044281 small molecule metabolic process
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0006412 translation
biological_process GO:0031323 regulation of cellular metabolic process
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0007030 Golgi organization
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0016120 carotene biosynthetic process
biological_process GO:0043631 RNA polyadenylation
biological_process GO:0007033 vacuole organization
biological_process GO:0009651 response to salt stress
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0006007 glucose catabolic process
biological_process GO:0006897 endocytosis
biological_process GO:0006816 calcium ion transport
biological_process GO:0042255 ribosome assembly
biological_process GO:0055085 transmembrane transport
biological_process GO:0008643 carbohydrate transport
biological_process GO:0006782 protoporphyrinogen IX biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0009853 photorespiration
biological_process GO:0009765 photosynthesis, light harvesting
biological_process GO:0016123 xanthophyll biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0010114 response to red light
biological_process GO:0010218 response to far red light
biological_process GO:0009637 response to blue light
biological_process GO:0016310 phosphorylation
biological_process GO:0009644 response to high light intensity
biological_process GO:0015996 chlorophyll catabolic process
biological_process GO:0006364 rRNA processing
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009657 plastid organization
biological_process GO:0010155 regulation of proton transport
biological_process GO:0009744 response to sucrose
cellular_component GO:0005886 plasma membrane
cellular_component GO:0030093 chloroplast photosystem I
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0005829 cytosol
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005777 peroxisome
cellular_component GO:0044425 membrane part
cellular_component GO:0034357 photosynthetic membrane
cellular_component GO:0030076 light-harvesting complex
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005768 endosome
cellular_component GO:0010287 plastoglobule
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005746 mitochondrial respiratory chain
cellular_component GO:0045277 respiratory chain complex IV
cellular_component GO:0005840 ribosome
cellular_component GO:0005634 nucleus
cellular_component GO:0009512 cytochrome b6f complex
cellular_component GO:0009523 photosystem II
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0032991 protein-containing complex
cellular_component GO:0042651 thylakoid membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0033179 proton-transporting V-type ATPase, V0 domain
cellular_component GO:0005741 mitochondrial outer membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0000325 plant-type vacuole
cellular_component GO:0005759 mitochondrial matrix
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0016020 membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009522 photosystem I
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0008308 voltage-gated anion channel activity
molecular_function GO:0042802 identical protein binding
molecular_function GO:0016758 transferase activity, transferring hexosyl groups
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0003856 3-dehydroquinate synthase activity
molecular_function GO:0051287 NAD binding
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005506 iron ion binding
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function GO:0045435 lycopene epsilon cyclase activity
molecular_function GO:0004652 polynucleotide adenylyltransferase activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0016992 lipoate synthase activity
molecular_function GO:0005471 ATP:ADP antiporter activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005351 carbohydrate:proton symporter activity
molecular_function GO:0004853 uroporphyrinogen decarboxylase activity
molecular_function GO:0047617 acyl-CoA hydrolase activity
molecular_function GO:0010181 FMN binding
molecular_function GO:0005198 structural molecule activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003993 acid phosphatase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo030240.84Barchart | Table
Spo122020.83Barchart | Table
Spo210670.83Barchart | Table
Spo105290.81Barchart | Table
Spo105370.80Barchart | Table
Spo001750.80Barchart | Table
Spo144160.80Barchart | Table
Spo075010.79Barchart | Table
Spo191130.79Barchart | Table
Spo024530.77Barchart | Table
Spo248570.77Barchart | Table
Spo062940.74Barchart | Table
Spo271020.74Barchart | Table
Spo237140.73Barchart | Table
Spo144410.73Barchart | Table
Spo060310.73Barchart | Table
Spo030190.73Barchart | Table
Spo228210.72Barchart | Table
Spo170460.72Barchart | Table
Spo017140.72Barchart | Table
Spo050290.71Barchart | Table
Spo008980.71Barchart | Table
Spo009360.71Barchart | Table
Spo122530.71Barchart | Table
Spo146870.71Barchart | Table
Spo247120.71Barchart | Table
Spo253470.71Barchart | Table
Spo102850.70Barchart | Table
Spo246250.70Barchart | Table
Spo057310.70Barchart | Table
Spo153460.69Barchart | Table
Spo117330.69Barchart | Table
Spo121760.69Barchart | Table
Spo141940.69Barchart | Table
Spo036180.69Barchart | Table
Spo024520.68Barchart | Table
Spo096690.68Barchart | Table
Spo192060.68Barchart | Table
Spo092900.67Barchart | Table
Spo050730.67Barchart | Table
Spo052280.67Barchart | Table
Spo130290.67Barchart | Table
Spo140870.67Barchart | Table
Spo181850.67Barchart | Table
Spo204410.67Barchart | Table
Spo020680.67Barchart | Table
Spo066760.67Barchart | Table
Spo018580.67Barchart | Table
Spo121280.67Barchart | Table
Spo132020.66Barchart | Table
Spo013560.66Barchart | Table
Spo266620.66Barchart | Table
Spo146780.66Barchart | Table
Spo263490.66Barchart | Table
Spo109270.66Barchart | Table
Spo050930.66Barchart | Table
Spo113170.66Barchart | Table
Spo019290.66Barchart | Table
Spo021070.65Barchart | Table
Spo216910.65Barchart | Table
Spo259640.65Barchart | Table
Spo076190.65Barchart | Table
Spo073900.65Barchart | Table