Spo16738 (gene)

Overview
NameSpo16738
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_153 : 292109 .. 294726 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCTGTAAGTCGATCCAGGGCAAGTTTTCGGATCTATTATGACATAGACGTGTGGCTCTCAACAAACCTTTTTTTTATTCAAAGCCCTTTTTAGGTTTTTTAAAATAAAAATGATTTTTTTTTGTGCAACTTAGATTTAGTATTTTAGAATAATAAATAATATTTCTATCTATTATTGATTATTCTAAAATATATATTTTTTATTTAAAATAGTAATTTATTTATTTGTATTAATAGCTAATAGACGAAAAGAAATAAATCTATTCTATATTCTAGCTCTGTATTCTTTATCCCTACGAAATACCAGACAAATCAGAATGATTTGAGAACGAATAGAAGAATTTTTTTAATTGGTTGTTCTTTCTCGAAGAATGATTCCATTTTATTTGACTAATAGACCAAAAAGAAAAAGAATTATAAAAAATAACAATTTTTTCTTTTATTCGAAACGCCACGTGATCTTCAACCAACTATGCGCTTCAATATAATTCCCAGGAGTAAGCATTAGAGCATGTTTCCAATACTCAGTGGCTTAATCGAACCAAGTCTCCGCAATTTCAGAATCTCCCTGTAGAATGGCTTTTTCTCCCCCCGTCGGAATAGGAATAAGGTCAATTCCTTCCCTTAGAACCGTACTTGAGAGTTTCCTACCTCATACGGCTTCGCAACCAATTCTTTATGGTGTCCTATTAAACCGAATGCGATTTCTTTTTGTTCATAGATTTCTGATTTTTATTCTACTGTTCGGAGGAACCAAAAGAGGTTAATCAGATGAGTTTCAAACTTTCATTTTGATTTAATTAAAAATAAGTTTCAGTTTTATCTTTTCTCCCACCTGCAAAAGAAGAAAGCACAAGTATTTACCCCTATCCTTCATATTTTCCGCAAGGTAACTATCTCGGTTTCATATCGAGATTTATATAGAATCTTTGAAAAAGGCTTTCCTTCATAAGTAAGAAAGAAAAGACTTACTATCTTTGGGATTTGATCCTACACCGCCGCTCAATACCTTAGTCTTAGTCAGGGGCTGAACCAGAAACTATATATATGGGGGGTCGAAACTTAACTTATAATTATTTTAACAATGAAAAACAAAAATAAAATAAAAAACTAAAGGAGTCAAGATTCGAACCTTGTACCTCCAACAACCTCTATATTTTAAGGTAAAATAACCATGACACATGTGTTATTCTAATTAGGGCTGGCAAAAGCTGACCCGACCTGATAACCCGACCCGAACTGAAAATAGCGGGTTTGGGTTGAGATTTTCAACCCGATTAATTAAATGGGTCGACACGAACCCGACCTGAAGTTAAATGGGTTAGGTTTGGGTTAAAAATCTCAACCCGAAATCAACCTGTGTAACCCGATTATTTATATGGGTCAAAATCAGGTCGGGTCAACCCGACCTGATAACCTGGAAAAAGTATAATAATAATAAAAAAAAAGGTTTAAAACAAAATTTAGTGTAGAAAGAACGAAATTTTTGTTAAAACAAAAAAAAGAATACAGCGCAGCTCCTTTGATGCAATAATGGGCCAAGCCCAAAATTACTTTCCTTTACACTAAATTATGATGCACTACAAACTTACTAACCCTAATTGCACTCTCAGACTCTCTCAGACTCTCTCTCTCTCTCTCTCTCTCTAAAAACATAAGCGCCGCTTCCCGGTTCTTCTCAATCTCTCATCCTCTGCTCAACGGCTCAATTCTTCGGTTCCTCTTCATTCACTCGGTAATGTTCTTCACTCTTTATTCATTTGCTGTGTTCTTTCTCTGATTTATGCTATTTTTTTTTCGATTTTTATATGCTAATTTATGCTACTTTTTTTTATATTCGATTTTGTATATGTTGATATTTTCGATTTTGTTTTTCTCGATTTTATTTATGCTAATGTTTTATATTTTTTCGATTTTATTCTCGATTTATGTTCAAGAATGATATATGTCTTTATTTTAATTTATACATCATTATATGTTAATTCTAGTATACTTTGAGGATTTGCATATCTATTTTATTTATTTGAAGAGTAATGCATGGTTTTGCATCTTAAAATCAACAGTTTTTTTGGATTATTAATTGACTTTAGAGTAATTTTCTTGATTTGAATGTTTATGTAAGTATATTTTCGTCGATTTGTATGATTTTATGAATGAATAATTTCGTGGATTTGTATTTCCCCGATCTAATTTTTGTTTCCGTTTTATTTATAAAAATGCTAATATTATTATCTTTTGTTATGTTCTGTGTGCAGGTGTATTTATTCAACGAAATTTTGGCATCCCGTTATCACAAAGCTACGAATGGAGGATGCAACACACTACATTTTAGATTTTTAGATATTTTTCTTACTATTTAAGTTTTAATTGATTGTTTGATTTTGTTGTAATATAATTTTAATATTTAATCCTGCACTTTTGTTTTGGTTTTATGTTGATGTTAAACACCATCGTTATTTCCAGATCTAATGAAAAAAGCTTGATTAATATTCTTGTATCGAAACAAGCAGGTTAAATATGTTAAATGGGTTCGGGTTGACCCAAAATAAGCAAGTTAAATGGGTTAAGCTATTTGTAAAAATTCAAGTGAAAATAAATCAGGTTGAGCAGATCAG

mRNA sequence

ATGATCTACTCTCTCAGACTCTCTCTCTCTCTCTCTCTCTCTAAAAACATAAGCGCCGCTTCCCGGTTCTTCTCAATCTCTCATCCTCTGCTCAACGGCTCAATTCTTCGGTTCCTCTTCATTCACTCGGTGTATTTATTCAACGAAATTTTGGCATCCCGTTATCACAAAGCTACGAATGGAGGATGCAACACACTACATTTTAGATTTTTAGATATTTTTCTTACTATTTAAGTTTTAATTGATTGTTTGATTTTGTTGTAATATAATTTTAATATTTAATCCTGCACTTTTGTTTTGGTTTTATGTTGATGTTAAACACCATCGTTATTTCCAGATCTAATGAAAAAAGCTTGATTAATATTCTTGTATCGAAACAAGCAGGTTAAATATGTTAAATGGGTTCGGGTTGACCCAAAATAAGCAAGTTAAATGGGTTAAGCTATTTGTAAAAATTCAAGTGAAAATAAATCAGGTTGAGCAGATCAG

Coding sequence (CDS)

ATGATCTACTCTCTCAGACTCTCTCTCTCTCTCTCTCTCTCTAAAAACATAAGCGCCGCTTCCCGGTTCTTCTCAATCTCTCATCCTCTGCTCAACGGCTCAATTCTTCGGTTCCTCTTCATTCACTCGGTGTATTTATTCAACGAAATTTTGGCATCCCGTTATCACAAAGCTACGAATGGAGGATGCAACACACTACATTTTAGATTTTTAGATATTTTTCTTACTATTTAA

Protein sequence

MIYSLRLSLSLSLSKNISAASRFFSISHPLLNGSILRFLFIHSVYLFNEILASRYHKATNGGCNTLHFRFLDIFLTI
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo16738.1Spo16738.1mRNA


Homology
[Close]
BLAST of Spo16738.1 vs. NCBI nr
Match: gi|902182199|gb|KNA09884.1| (hypothetical protein SOVF_149450, partial [Spinacia oleracea])

HSP 1 Score: 137.9 bits (346), Expect = 7.500e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

		  

Query: 8  SLSLSLSKNISAASRFFSISHPLLNGSILRFLFIHSVYLFNEILASRYHKATNGGCNTLH 67
          SLSLSLSKNISAASRFFSISHPLLNGSILRFLFIHSVYLFNEILASRYHKATNGGCNTLH
Sbjct: 5  SLSLSLSKNISAASRFFSISHPLLNGSILRFLFIHSVYLFNEILASRYHKATNGGCNTLH 64

Query: 68 FRFLDIFLTI 78
          FRFLDIFLTI
Sbjct: 65 FRFLDIFLTI 74
[Close]
BLAST of Spo16738.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QRE9_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_149450 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.200e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

		  

Query: 8  SLSLSLSKNISAASRFFSISHPLLNGSILRFLFIHSVYLFNEILASRYHKATNGGCNTLH 67
          SLSLSLSKNISAASRFFSISHPLLNGSILRFLFIHSVYLFNEILASRYHKATNGGCNTLH
Sbjct: 5  SLSLSLSKNISAASRFFSISHPLLNGSILRFLFIHSVYLFNEILASRYHKATNGGCNTLH 64

Query: 68 FRFLDIFLTI 78
          FRFLDIFLTI
Sbjct: 65 FRFLDIFLTI 74
The following BLAST results are available for this feature:
BLAST of Spo16738.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902182199|gb|KNA09884.1|7.5e-30100.hypothetical protein SOVF_1494... [more]
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BLAST of Spo16738.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QRE9_SPIOL5.2e-30100.Uncharacterized protein (Fragm... [more]
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BLAST of Spo16738.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo16738.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0006547 histidine metabolic process
biological_process GO:0006075 (1->3)-beta-D-glucan biosynthetic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0008152 metabolic process
biological_process GO:0015716 organic phosphonate transport
biological_process GO:0015748 organophosphate ester transport
biological_process GO:0006782 protoporphyrinogen IX biosynthetic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006427 histidyl-tRNA aminoacylation
biological_process GO:0006857 oligopeptide transport
biological_process GO:0001510 RNA methylation
biological_process GO:0006396 RNA processing
biological_process GO:0052889 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0006694 steroid biosynthetic process
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0000165 MAPK cascade
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0055085 transmembrane transport
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0006412 translation
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0009944 polarity specification of adaxial/abaxial axis
biological_process GO:0032259 methylation
biological_process GO:0010014 meristem initiation
biological_process GO:0006886 intracellular protein transport
biological_process GO:0052546 cell wall pectin metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0033036 macromolecule localization
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0071702 organic substance transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0033179 proton-transporting V-type ATPase, V0 domain
cellular_component GO:0009509 chromoplast
cellular_component GO:0009536 plastid
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0031225 anchored component of membrane
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0090406 pollen tube
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005840 ribosome
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0016020 membrane
cellular_component GO:0000148 1,3-beta-D-glucan synthase complex
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005768 endosome
cellular_component GO:0005802 trans-Golgi network
molecular_function GO:0035673 oligopeptide transmembrane transporter activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003843 1,3-beta-D-glucan synthase activity
molecular_function GO:0004853 uroporphyrinogen decarboxylase activity
molecular_function GO:0016719 carotene 7,8-desaturase activity
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0004821 histidine-tRNA ligase activity
molecular_function GO:0016874 ligase activity
molecular_function GO:0052886 9,9'-dicis-carotene:quinone oxidoreductase activity
molecular_function GO:0008171 O-methyltransferase activity
molecular_function GO:0008173 RNA methyltransferase activity
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0019905 syntaxin binding
molecular_function GO:0052887 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity
molecular_function GO:0015416 ATPase-coupled organic phosphonate transmembrane transporter activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo022800.73Barchart | Table
Spo245900.73Barchart | Table
Spo018410.72Barchart | Table
Spo173860.72Barchart | Table
Spo197130.72Barchart | Table
Spo030020.72Barchart | Table
Spo245940.71Barchart | Table
Spo020680.71Barchart | Table
Spo038650.71Barchart | Table
Spo235800.71Barchart | Table
Spo123640.70Barchart | Table
Spo027470.70Barchart | Table
Spo053410.70Barchart | Table
Spo008120.70Barchart | Table
Spo149420.70Barchart | Table
Spo164210.70Barchart | Table
Spo271020.69Barchart | Table
Spo258510.69Barchart | Table
Spo214650.69Barchart | Table
Spo119110.69Barchart | Table
Spo178870.69Barchart | Table
Spo158650.69Barchart | Table
Spo235880.69Barchart | Table
Spo103880.69Barchart | Table
Spo056030.69Barchart | Table
Spo245490.68Barchart | Table
Spo146610.68Barchart | Table
Spo177780.68Barchart | Table
Spo172910.68Barchart | Table
Spo003970.68Barchart | Table
Spo192450.68Barchart | Table
Spo237720.68Barchart | Table
Spo074150.68Barchart | Table
Spo233460.68Barchart | Table
Spo229700.68Barchart | Table
Spo092670.68Barchart | Table
Spo121070.68Barchart | Table
Spo134410.68Barchart | Table
Spo003910.67Barchart | Table
Spo005790.67Barchart | Table
Spo033820.67Barchart | Table
Spo066730.67Barchart | Table
Spo069620.67Barchart | Table
Spo074410.67Barchart | Table
Spo084350.67Barchart | Table
Spo104210.67Barchart | Table
Spo104730.67Barchart | Table
Spo229400.67Barchart | Table
Spo245980.67Barchart | Table
Spo072660.66Barchart | Table
Spo071840.66Barchart | Table
Spo018400.66Barchart | Table
Spo140960.66Barchart | Table
Spo247360.66Barchart | Table
Spo253300.66Barchart | Table
Spo168040.66Barchart | Table
Spo175470.66Barchart | Table
Spo220120.66Barchart | Table
Spo014370.66Barchart | Table
Spo229550.66Barchart | Table
Spo089990.66Barchart | Table
Spo089970.66Barchart | Table
Spo134920.66Barchart | Table
Spo156060.66Barchart | Table
Spo236860.66Barchart | Table
Spo072910.66Barchart | Table
Spo144540.66Barchart | Table
Spo158240.65Barchart | Table
Spo200730.65Barchart | Table
Spo208520.65Barchart | Table
Spo091620.65Barchart | Table
Spo086800.65Barchart | Table
Spo076090.65Barchart | Table
Spo240660.65Barchart | Table
Spo006940.65Barchart | Table