Spo16694 (gene)

Overview
NameSpo16694
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr5 : 18102837 .. 18103040 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCGCTGCCGCAGCAGCAGCTTCAGCTGCAACCTCAATCGTCAAACTCGACACCTCCGCCTTAGCCTCGCCTTTCCGAAGCCGGATCTCTCAGCTCCGCCTTACCTCTCCTTCGCCTCGGTTCTCCCAATTTCGACCCTTGACCTCTTCCAATTCTTCTGGTAAATCCATCCCTCTGTTTTGTCTCTTTTGGTTCTAA

mRNA sequence

ATGGCCACCGCTGCCGCAGCAGCAGCTTCAGCTGCAACCTCAATCGTCAAACTCGACACCTCCGCCTTAGCCTCGCCTTTCCGAAGCCGGATCTCTCAGCTCCGCCTTACCTCTCCTTCGCCTCGGTTCTCCCAATTTCGACCCTTGACCTCTTCCAATTCTTCTGGTAAATCCATCCCTCTGTTTTGTCTCTTTTGGTTCTAA

Coding sequence (CDS)

ATGGCCACCGCTGCCGCAGCAGCAGCTTCAGCTGCAACCTCAATCGTCAAACTCGACACCTCCGCCTTAGCCTCGCCTTTCCGAAGCCGGATCTCTCAGCTCCGCCTTACCTCTCCTTCGCCTCGGTTCTCCCAATTTCGACCCTTGACCTCTTCCAATTCTTCTGGTAAATCCATCCCTCTGTTTTGTCTCTTTTGGTTCTAA

Protein sequence

MATAAAAAASAATSIVKLDTSALASPFRSRISQLRLTSPSPRFSQFRPLTSSNSSGKSIPLFCLFWF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo16694.1Spo16694.1mRNA


Homology
[Close]
BLAST of Spo16694.1 vs. NCBI nr
Match: gi|902212063|gb|KNA16859.1| (hypothetical protein SOVF_085380 [Spinacia oleracea])

HSP 1 Score: 94.4 bits (233), Expect = 8.300e-17
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

		  

Query: 1  MATAAAAAASAATSIVKLDTSALASPFRSRISQLRLTSPSPRFSQFRPLTSSNSSG 57
          MATAAAAAASAATSIVKLDTSALASPFRSRISQLRLTSPSPRFSQFRPLTSSNSSG
Sbjct: 1  MATAAAAAASAATSIVKLDTSALASPFRSRISQLRLTSPSPRFSQFRPLTSSNSSG 56
[Close]
BLAST of Spo16694.1 vs. NCBI nr
Match: gi|731333849|ref|XP_010677933.1| (PREDICTED: 3-oxoacyl-[acyl-carrier-protein])

HSP 1 Score: 60.8 bits (146), Expect = 1.000e-6
Identity = 41/53 (77.36%), Postives = 42/53 (79.25%), Query Frame = 1 

		  

Query: 4  AAAAAASAATSIVKLDTSALASPFRSRISQLRLTSPSPRFSQFRPLTSSNSSG 57
          AAAAAASAATSI KLDTSALA PFR RIS LRLTS     S  RPLTSS+SSG
Sbjct: 2  AAAAAASAATSIAKLDTSALALPFRRRISLLRLTSSPLPISHSRPLTSSHSSG 54
[Close]
BLAST of Spo16694.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCZ9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_085380 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.800e-17
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

		  

Query: 1  MATAAAAAASAATSIVKLDTSALASPFRSRISQLRLTSPSPRFSQFRPLTSSNSSG 57
          MATAAAAAASAATSIVKLDTSALASPFRSRISQLRLTSPSPRFSQFRPLTSSNSSG
Sbjct: 1  MATAAAAAASAATSIVKLDTSALASPFRSRISQLRLTSPSPRFSQFRPLTSSNSSG 56
[Close]
BLAST of Spo16694.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CCC9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g110690 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.100e-7
Identity = 41/53 (77.36%), Postives = 42/53 (79.25%), Query Frame = 1 

		  

Query: 4  AAAAAASAATSIVKLDTSALASPFRSRISQLRLTSPSPRFSQFRPLTSSNSSG 57
          AAAAAASAATSI KLDTSALA PFR RIS LRLTS     S  RPLTSS+SSG
Sbjct: 2  AAAAAASAATSIAKLDTSALALPFRRRISLLRLTSSPLPISHSRPLTSSHSSG 54
The following BLAST results are available for this feature:
BLAST of Spo16694.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902212063|gb|KNA16859.1|8.3e-17100.hypothetical protein SOVF_0853... [more]
gi|731333849|ref|XP_010677933.1|1.0e-677.3PREDICTED: 3-oxoacyl-[acyl-car... [more]
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BLAST of Spo16694.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RCZ9_SPIOL5.8e-17100.Uncharacterized protein OS=Spi... [more]
A0A0J8CCC9_BETVU7.1e-777.3Uncharacterized protein OS=Bet... [more]
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BLAST of Spo16694.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo16694.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0009853 photorespiration
biological_process GO:0051604 protein maturation
biological_process GO:0051788 response to misfolded protein
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0016573 histone acetylation
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0009627 systemic acquired resistance
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006814 sodium ion transport
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009414 response to water deprivation
biological_process GO:0016556 mRNA modification
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0009737 response to abscisic acid
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0006121 mitochondrial electron transport, succinate to ubiquinone
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0071806 protein transmembrane transport
biological_process GO:0006281 DNA repair
biological_process GO:0006310 DNA recombination
biological_process GO:0006099 tricarboxylic acid cycle
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0045185 maintenance of protein location
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006414 translational elongation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006890 retrograde vesicle-mediated transport, Golgi to ER
biological_process GO:0006396 RNA processing
biological_process GO:0006508 proteolysis
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0045281 succinate dehydrogenase complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
cellular_component GO:0009536 plastid
cellular_component GO:0005773 vacuole
cellular_component GO:0005576 extracellular region
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005778 peroxisomal membrane
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0005739 mitochondrion
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0005840 ribosome
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0017119 Golgi transport complex
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0005742 mitochondrial outer membrane translocase complex
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005829 cytosol
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0009507 chloroplast
cellular_component GO:0000123 histone acetyltransferase complex
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0005515 protein binding
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0004402 histone acetyltransferase activity
molecular_function GO:0008177 succinate dehydrogenase (ubiquinone) activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0051538 3 iron, 4 sulfur cluster binding
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo059490.83Barchart | Table
Spo010660.81Barchart | Table
Spo242130.80Barchart | Table
Spo269940.79Barchart | Table
Spo170680.79Barchart | Table
Spo015460.79Barchart | Table
Spo144040.79Barchart | Table
Spo021590.77Barchart | Table
Spo023890.77Barchart | Table
Spo159020.77Barchart | Table
Spo200470.76Barchart | Table
Spo088610.76Barchart | Table
Spo067140.76Barchart | Table
Spo166920.76Barchart | Table
Spo248740.76Barchart | Table
Spo054150.75Barchart | Table
Spo005800.75Barchart | Table
Spo181430.75Barchart | Table
Spo182010.75Barchart | Table
Spo252060.75Barchart | Table
Spo013980.74Barchart | Table
Spo242030.74Barchart | Table
Spo009680.74Barchart | Table
Spo082580.74Barchart | Table
Spo188740.74Barchart | Table
Spo172440.73Barchart | Table
Spo253400.73Barchart | Table
Spo214300.73Barchart | Table
Spo015130.73Barchart | Table
Spo051500.72Barchart | Table
Spo257140.72Barchart | Table
Spo193490.71Barchart | Table
Spo065710.71Barchart | Table
Spo059350.71Barchart | Table
Spo102120.70Barchart | Table
Spo271800.70Barchart | Table
Spo168200.69Barchart | Table
Spo272850.69Barchart | Table
Spo116820.69Barchart | Table
Spo253040.69Barchart | Table
Spo233050.68Barchart | Table
Spo022870.68Barchart | Table
Spo248670.68Barchart | Table
Spo036260.68Barchart | Table
Spo091390.68Barchart | Table
Spo028370.67Barchart | Table
Spo181440.67Barchart | Table
Spo272270.67Barchart | Table
Spo124380.67Barchart | Table
Spo248630.67Barchart | Table
Spo185740.66Barchart | Table
Spo075930.66Barchart | Table
Spo137890.66Barchart | Table
Spo116790.66Barchart | Table
Spo110560.66Barchart | Table
Spo210690.66Barchart | Table
Spo258470.66Barchart | Table
Spo247710.65Barchart | Table
Spo014030.65Barchart | Table
Spo014910.65Barchart | Table