Spo16629 (gene)

Overview
NameSpo16629
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRNA-binding protein 38
LocationSpoScf_00957 : 102595 .. 106579 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCCGCATTAGAGTGGGAAAAAACATCCAAGATTGGAGAGAGATGAGTTCACGTTGCTAAGAAGCTAAGAGACAAGTATAGCACTACAATTCCTAATCACCATATTCTTACCTGTCATTACCTGTCTCAATTCAAAATTCCCATACTGTCCTTCTTCCCCTTATATTTCCCGGGCCCCCTTGTCTTAATTTCACTCCTCTATTATTCCTTCTTCTCTAAAAAGTAAAAACTCAGCTTCCATTACCATATATACTACTAGTCTACTACACTTGATAAATCTTATCTATCTAATTCTAAGATGACAATGAGCGACTACAACAACAACGACAATAGTAATACTAAATCGCAATTCGGCGACACAACACTTACGAAAGTTTTCGTAGGAGGGTTAGCATGGGAGACGCCTAAGCAATCATTGTACGAACATTTTGAGAAGTACGGTGAGATCTTGGAGGCGGTTATCATTTCCGATAAGATCACCGGTCGATCCAAGGGTTATGGCTTTGTAAGTTATTGTTATCGTTATCGTTATCGATCTTTGCTTTCGACACTAGAATAATCATTTACATATAACAAATAATAATATTAATATTAATATTAATATTAATTAATTAATTAAAACGTACAGGTGACTTTTAAGGAGGCAGAGGCAGCAAAGAAGGCATGTGAAGATGCAACACCAATTATCAACGGCAGACGTGCTAACTGCAACCTAGCTGCACTAGGGGCTCGCCGTCCACCTCGAGCATCTTCCACCACTCCGCAACCCTATCAACGGCAAGTGTCAAACAATAGCAACACCAATGTTGGTGGTACCACCACGGCTGCTGCACCTACTGCTGCAGGTCATGTGCAGTGGTACTATCCTGCTGCTGCTGGTCGTGCTAGTTCGCCTACTACAACGACACCGTTTCATCCCCATCAAGCTGTTCCTTTCTATGGGTATAATTTAATTAATTGTAACAATTGTGAATTGGAAATTTATAATCTAATGTACATTGTTATTTTGAAATTATTTCAGGTACTCTCCAACCTATATTGCAGCTGATGTTGGCTACAATCATGTAAGTAAATATTCCCTACTTCATACTACTTCAATTCAACTATAATTACTACGTACATTGTCATGTGTTGCAAATTTATGTTTGACTTGGTTGTTGAAACTATAATTGAAATAGTGAAATCTTCAACTGTTTTATGTTTTGTGATCGCAAACATTTTAAACTTAGCGTGCACAAATCATTATGTGTTCATTATATGCCAGAGTGTACTTTATATTACATATCCGCGTTCATTATTTTGCTCTTTGGCTAATAAGGTGATCTCTCAAATTCAAATGGACTTAAAAATAACATTGGGTGTGTAATTCTCCTAGACGGATCCATATACTAAATTGTGAAGCGTAACCAAACAAATCGTACGCCATAATACCAAGCATTATTTTCCAAAAAGTGGCAATAAAATGGTTAATTTTTAGTCCGTACTAAAATTTCACCTAATGACTTCATCTGTGAGACCAGCAACTCTTTTTGATGCAAAGTTGCAAACTAATATGAGTCCAACGATGACAACAGTTTCAATTGTATCTTTGCATAAGATTTCATATGACCAATGATCATATACACACATTAAATTTGCACGAAAACAAATTGGTGGTCCCCTCTAATTAACCATAAGCATCTCATTTTTCTTCTCATGATTTTCGCTCTTTATTTTCAATACTAGGCACTTTCATTTGTAATATGGAACCATATAAAAAGACACTTCTTCCATTTCGTATATTTATCAGATCAATCATCTATCTATTCTTCTTATAAAATGTATCTCTTTGAGCTTAAAAACCCAATGCGATATGTGTTGCTCTAAATTTATTTCAATATACATTGAATTTTATTTTACTTTTTGATAAGTAAAAAAATTGGTATTCACACTAAAAATCAATTTCAATATACATTGTATTATTATTTGTCAATTTCAGATACTTTGCCTAAAATAATGTGCACAACAAATTAACGAAATAACTTTTTATTCCAAATGCTAAAAGTTATCATATCTCAAAAATTTTCACCGTACAATTAAATATACTTTCTAAGTATAACTGACTGTACAATTAAGATCGAAAAATCTTCTCCCTCGGTCCCTCCCTAGTCCCTACCCTTTCCTTCTTTTGAGTTTTCTTTTTTCTCCTTTCGTAATTAGGACCGTTATATTGTTGACTGAATGGTCAAACTAATATGTTACTGTAATTGCAGAAGTTAAGCTACAGTGGTGGGGCCTACATAAACGGTGGGCAGCATTACACACAGATGTATCCAGGTCAGGCTATGATGGCGGGAGCAAACACATTGATGCCATATTACCCATTTTACCCTTACTCTCACCATCACCACCACCAACATCAACACCAATCCCATCACCAGGCTGCTGCTATGGGCCTACCAGCCCACATTTTCCCACCTTCTTCTGCTGGCCCAATTACTGTTTCTCCTCCCATTATCTCTAAGCCCATTACTCCCATTTGCGTAACCCCTCCCTCAGGTATACTTTCTTTATAAATTAGACATTTAATCACTTTATACATGCCAAATTCGTATATAAGCAAGTTTGATGGATTTTATTTCGTTAAAATACGTATTAGTTAAACAAAAAAAATCAACGAAAAAGTCATAAAATCACTTAAAAGTCTATGAGTTTGAAAATTTTGTTTAGTTAGACAGTCTCATAAGGGATCAACTCTGCATTTCTCCACCTTATGCAAGATAGTTAATGTATCATTTTTGTCCTTTAATCCAAAAATTAGATCACGAATAATAAATTCATAAAAAAATCATAACCTCAATTCTAAATTATGCCTCATGTAGTGGTCTAGTTGGCATCAATCATGCCCTTCCTTCGGCCTCGGCTGTCTTTAGAGACATGGTCGCACGTATTTTTGCTGGCATTACATGTGTGCAACTATCAATGACAATCTATGTCTTCACTACAAAGTACCACTACTATGATAATGACATTAACAGCTTTAAAATAAAATTGCTATCTTACTTGAGATCATTTACAAGCCGATTTTAATATCCTGCTAGAGATGGACTTACAATAACTCTAACATTGATATTTACAAATTTGTTCAGTCTTGTACGAAGTATAAGATAGGTACATGTTAGAATTTTGATTCAGTTTTCTATTTATGAATTACGACTTTGATGTTCAAATATTTCATTTAACTTTAGATGTTCATTTGTATTATGTAGTAATGTAGGGCACTCTGCACTTTATTTTAGATCAAAAATTAAATTTTAGGTTGACATCAGTGACAAACCTTTACTATGGTTGTGGTGGGCCTAGTCCCTGGCGAAAACTTTTGTAGTCTAATTTTAGTCCCGACCCTTCAACTTTGAGCATAATTAATTGTGAGTATCTCATACTACACGAGGAGTATATTGCCTTTTTTTTATATACTGCCTCCATCATTGTTCAAGAACTGTTACTGGTCGTCATAATAATTGTATACCCGTATTAGTATTATTATTATTATGCTTAAATGAGACTTAGGAGATTGAATTTATTTTATTAACTAATTTAGGTAAGAACTATAAACTGATATATACCATGGGATTCAGTGTGCTTGACAGTGGAGTAGGTTCAATTGGAGCAAGGGAGAGCTTAAAGAAAGGAAGAATCATTCAATAATTGCAAGCAAAAGAAGAATGCATGGAAGATTGTGTCTTTGGCTCAGAATCACATTATTATCATCTCATCAAGAATGGCTCATCTTTCCAACCAAAACAAGATAAAAGGGCCCCAAAAAAACCCTAATTTTTTAATCCAATTTTTTTAATTATTAATTGATTTTCTTAGGTATTGGATAATTAATTAATTACAATTAATATATTCATTTATTCTACTCCCTCTAGTTTTCTTCTCTAACCCACATGATCATGGAAATCATGTTGTGTAATAATATCATAGTACTTATGTAATCTCCCCT

mRNA sequence

CGCCGCATTAGAGTGGGAAAAAACATCCAAGATTGGAGAGAGATGAGTTCACGTTGCTAAGAAGCTAAGAGACAAGTATAGCACTACAATTCCTAATCACCATATTCTTACCTGTCATTACCTGTCTCAATTCAAAATTCCCATACTGTCCTTCTTCCCCTTATATTTCCCGGGCCCCCTTGTCTTAATTTCACTCCTCTATTATTCCTTCTTCTCTAAAAAGTAAAAACTCAGCTTCCATTACCATATATACTACTAGTCTACTACACTTGATAAATCTTATCTATCTAATTCTAAGATGACAATGAGCGACTACAACAACAACGACAATAGTAATACTAAATCGCAATTCGGCGACACAACACTTACGAAAGTTTTCGTAGGAGGGTTAGCATGGGAGACGCCTAAGCAATCATTGTACGAACATTTTGAGAAGTACGGTGAGATCTTGGAGGCGGTTATCATTTCCGATAAGATCACCGGTCGATCCAAGGGTTATGGCTTTGTGACTTTTAAGGAGGCAGAGGCAGCAAAGAAGGCATGTGAAGATGCAACACCAATTATCAACGGCAGACGTGCTAACTGCAACCTAGCTGCACTAGGGGCTCGCCGTCCACCTCGAGCATCTTCCACCACTCCGCAACCCTATCAACGGCAAGTGTCAAACAATAGCAACACCAATGTTGGTGGTACCACCACGGCTGCTGCACCTACTGCTGCAGGTCATGTGCAGTGGTACTATCCTGCTGCTGCTGGTCGTGCTAGTTCGCCTACTACAACGACACCGTTTCATCCCCATCAAGCTGTTCCTTTCTATGGGTACTCTCCAACCTATATTGCAGCTGATGTTGGCTACAATCATAAGTTAAGCTACAGTGGTGGGGCCTACATAAACGGTGGGCAGCATTACACACAGATGTATCCAGGTCAGGCTATGATGGCGGGAGCAAACACATTGATGCCATATTACCCATTTTACCCTTACTCTCACCATCACCACCACCAACATCAACACCAATCCCATCACCAGGCTGCTGCTATGGGCCTACCAGCCCACATTTTCCCACCTTCTTCTGCTGGCCCAATTACTGTTTCTCCTCCCATTATCTCTAAGCCCATTACTCCCATTTGCGTAACCCCTCCCTCAGTGTGCTTGACAGTGGAGTAGGTTCAATTGGAGCAAGGGAGAGCTTAAAGAAAGGAAGAATCATTCAATAATTGCAAGCAAAAGAAGAATGCATGGAAGATTGTGTCTTTGGCTCAGAATCACATTATTATCATCTCATCAAGAATGGCTCATCTTTCCAACCAAAACAAGATAAAAGGGCCCCAAAAAAACCCTAATTTTTTAATCCAATTTTTTTAATTATTAATTGATTTTCTTAGGTATTGGATAATTAATTAATTACAATTAATATATTCATTTATTCTACTCCCTCTAGTTTTCTTCTCTAACCCACATGATCATGGAAATCATGTTGTGTAATAATATCATAGTACTTATGTAATCTCCCCT

Coding sequence (CDS)

ATGACAATGAGCGACTACAACAACAACGACAATAGTAATACTAAATCGCAATTCGGCGACACAACACTTACGAAAGTTTTCGTAGGAGGGTTAGCATGGGAGACGCCTAAGCAATCATTGTACGAACATTTTGAGAAGTACGGTGAGATCTTGGAGGCGGTTATCATTTCCGATAAGATCACCGGTCGATCCAAGGGTTATGGCTTTGTGACTTTTAAGGAGGCAGAGGCAGCAAAGAAGGCATGTGAAGATGCAACACCAATTATCAACGGCAGACGTGCTAACTGCAACCTAGCTGCACTAGGGGCTCGCCGTCCACCTCGAGCATCTTCCACCACTCCGCAACCCTATCAACGGCAAGTGTCAAACAATAGCAACACCAATGTTGGTGGTACCACCACGGCTGCTGCACCTACTGCTGCAGGTCATGTGCAGTGGTACTATCCTGCTGCTGCTGGTCGTGCTAGTTCGCCTACTACAACGACACCGTTTCATCCCCATCAAGCTGTTCCTTTCTATGGGTACTCTCCAACCTATATTGCAGCTGATGTTGGCTACAATCATAAGTTAAGCTACAGTGGTGGGGCCTACATAAACGGTGGGCAGCATTACACACAGATGTATCCAGGTCAGGCTATGATGGCGGGAGCAAACACATTGATGCCATATTACCCATTTTACCCTTACTCTCACCATCACCACCACCAACATCAACACCAATCCCATCACCAGGCTGCTGCTATGGGCCTACCAGCCCACATTTTCCCACCTTCTTCTGCTGGCCCAATTACTGTTTCTCCTCCCATTATCTCTAAGCCCATTACTCCCATTTGCGTAACCCCTCCCTCAGTGTGCTTGACAGTGGAGTAG

Protein sequence

MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQVSNNSNTNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYIAADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYSHHHHHQHQHQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo16629.1Spo16629.1mRNA


Homology
[Close]
BLAST of Spo16629.1 vs. NCBI nr
Match: gi|902151071|gb|KNA05481.1| (hypothetical protein SOVF_189960 [Spinacia oleracea])

HSP 1 Score: 576.2 bits (1484), Expect = 3.100e-161
Identity = 289/291 (99.31%), Postives = 289/291 (99.31%), Query Frame = 1 

		  

Query: 1   MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI 60
           MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI
Sbjct: 1   MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI 60

Query: 61  TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQ 120
           TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQ
Sbjct: 61  TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQ 120

Query: 121 VSNNSNTNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYI 180
           VSNNSNTNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYI
Sbjct: 121 VSNNSNTNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYI 180

Query: 181 AADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYS--HHHHHQHQ 240
           AADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYS  HHHHHQHQ
Sbjct: 181 AADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYSHHHHHHHQHQ 240

Query: 241 HQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 290
           HQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE
Sbjct: 241 HQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 291
[Close]
BLAST of Spo16629.1 vs. NCBI nr
Match: gi|731375298|ref|XP_010667209.1| (PREDICTED: RNA-binding protein 38 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 452.2 bits (1162), Expect = 6.800e-124
Identity = 240/300 (80.00%), Postives = 257/300 (85.67%), Query Frame = 1 

		  

Query: 1   MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI 60
           MTMSDYNNN+N N KS FGDTTLTKVFVGGLAWETPKQ+L+EHFEKYGEI EAVIISDKI
Sbjct: 1   MTMSDYNNNNN-NDKSPFGDTTLTKVFVGGLAWETPKQALFEHFEKYGEIFEAVIISDKI 60

Query: 61  TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQP-YQR 120
           TGRSKGYGFVTFKE EAAKKACEDATPIINGRRANCNLAALGARRPPR+SSTTPQP +QR
Sbjct: 61  TGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLAALGARRPPRSSSTTPQPHHQR 120

Query: 121 QVSNNSNTNVGGTTTAAAPTA-----AGHVQWYYPA--AAGRASSPTTTTPFHP---HQA 180
           Q SN SN + G    A +PT+     AGHVQWYYPA  A+GRA+SPT TTPFH    HQA
Sbjct: 121 QASNGSNGSGGSGGNALSPTSAAAPPAGHVQWYYPAAVASGRATSPTPTTPFHAHQHHQA 180

Query: 181 VPFYGYSPTYIAADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPY 240
           VPFYGYSPTYIAADVGYNHKLSYSGGAYINGG HY QMYPGQA+MAGANTLMP YPFYPY
Sbjct: 181 VPFYGYSPTYIAADVGYNHKLSYSGGAYINGG-HYPQMYPGQALMAGANTLMPMYPFYPY 240

Query: 241 SHHHHHQHQHQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 290
           SH HHH   HQ  H  AAMGLPAHIFPP+SAGP+T   PII+KP TP+C+ PP+VCLTVE
Sbjct: 241 SHQHHH---HQQPHHQAAMGLPAHIFPPTSAGPMTAPLPIITKPTTPVCIAPPTVCLTVE 295
[Close]
BLAST of Spo16629.1 vs. NCBI nr
Match: gi|731375294|ref|XP_010667207.1| (PREDICTED: RNA-binding protein 38 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 441.0 bits (1133), Expect = 1.600e-120
Identity = 234/294 (79.59%), Postives = 251/294 (85.37%), Query Frame = 1 

		  

Query: 1   MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI 60
           MTMSDYNNN+N N KS FGDTTLTKVFVGGLAWETPKQ+L+EHFEKYGEI EAVIISDKI
Sbjct: 1   MTMSDYNNNNN-NDKSPFGDTTLTKVFVGGLAWETPKQALFEHFEKYGEIFEAVIISDKI 60

Query: 61  TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQP-YQR 120
           TGRSKGYGFVTFKE EAAKKACEDATPIINGRRANCNLAALGARRPPR+SSTTPQP +QR
Sbjct: 61  TGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLAALGARRPPRSSSTTPQPHHQR 120

Query: 121 QVSNNSNTNVGGTTTAAAPTA-----AGHVQWYYPA--AAGRASSPTTTTPFHP---HQA 180
           Q SN SN + G    A +PT+     AGHVQWYYPA  A+GRA+SPT TTPFH    HQA
Sbjct: 121 QASNGSNGSGGSGGNALSPTSAAAPPAGHVQWYYPAAVASGRATSPTPTTPFHAHQHHQA 180

Query: 181 VPFYGYSPTYIAADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPY 240
           VPFYGYSPTYIAADVGYNHKLSYSGGAYINGG HY QMYPGQA+MAGANTLMP YPFYPY
Sbjct: 181 VPFYGYSPTYIAADVGYNHKLSYSGGAYINGG-HYPQMYPGQALMAGANTLMPMYPFYPY 240

Query: 241 SHHHHHQHQHQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPS 284
           SH HHH   HQ  H  AAMGLPAHIFPP+SAGP+T   PII+KP TP+C+ PP+
Sbjct: 241 SHQHHH---HQQPHHQAAMGLPAHIFPPTSAGPMTAPLPIITKPTTPVCIAPPT 289
[Close]
BLAST of Spo16629.1 vs. NCBI nr
Match: gi|645255182|ref|XP_008233380.1| (PREDICTED: RNA-binding protein 38 [Prunus mume])

HSP 1 Score: 325.9 bits (834), Expect = 7.300e-86
Identity = 186/295 (63.05%), Postives = 211/295 (71.53%), Query Frame = 1 

		  

Query: 1   MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI 60
           MTMS      N+    QFGDTTLTKVFVGGLAWETPK++L EHF+KYGEILEAVIISDK+
Sbjct: 1   MTMS------NNVINGQFGDTTLTKVFVGGLAWETPKEALREHFDKYGEILEAVIISDKL 60

Query: 61  TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQ 120
           TGRSKGYGFVTFKEAEAAKKACEDATP INGRRANCNLA+LGARRP  AS+TT  P  ++
Sbjct: 61  TGRSKGYGFVTFKEAEAAKKACEDATPFINGRRANCNLASLGARRPRSASTTTTPPPPQR 120

Query: 121 VSNNSNTNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFH-----PHQAVPFYGY 180
            SN      G  + + AP  A HVQWYYPA AG     T  TPFH      HQ VPFYGY
Sbjct: 121 GSNGG----GARSMSPAPAPANHVQWYYPAPAG-----TPATPFHHQHHQHHQPVPFYGY 180

Query: 181 SPTYIAADVGYNHKLSYSGGAYINGGQHYT-QMYPGQAMMAGANTLMPYYPFYPYSHHHH 240
           SPTYIAAD+ YNHKL Y+GGAY+NG  HY+ Q+YPGQ M+ G NTLMP YP Y Y     
Sbjct: 181 SPTYIAADMSYNHKLGYTGGAYMNG--HYSPQVYPGQPMV-GPNTLMPMYPLYHY----- 240

Query: 241 HQHQHQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 290
                  HHQ+  MGLPAHIFPP++AG +   P I+SKP +   + P +VCL VE
Sbjct: 241 -------HHQSHTMGLPAHIFPPTTAGHVAAVPTIMSKPAS---IAPNTVCLAVE 262
[Close]
BLAST of Spo16629.1 vs. NCBI nr
Match: gi|224109676|ref|XP_002315274.1| (RNA recognition motif-containing family protein [Populus trichocarpa])

HSP 1 Score: 320.9 bits (821), Expect = 2.400e-84
Identity = 183/282 (64.89%), Postives = 209/282 (74.11%), Query Frame = 1 

		  

Query: 11  NSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFV 70
           ++N   QFGDTTLTKVFVGGLAWETPK ++ EHFEKYGEILEAVIISDKITGRSKGYGFV
Sbjct: 4   SNNIAGQFGDTTLTKVFVGGLAWETPKDAMREHFEKYGEILEAVIISDKITGRSKGYGFV 63

Query: 71  TFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQVSNNSNTNVG 130
           TFKEAE+AKKACEDA+PIINGRRANCNLA+LGARRP    S TP P Q+      N N G
Sbjct: 64  TFKEAESAKKACEDASPIINGRRANCNLASLGARRP---RSATPAPPQQ----GPNINAG 123

Query: 131 GTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFH--PHQAVPFYGYSPTYIAADVGYNH 190
             +T AAP  A HVQWYYPA +  A+S     PFH   HQAVPFYGYSP YIA D   NH
Sbjct: 124 PRSTPAAP--ANHVQWYYPAGSAAAAS-----PFHHQHHQAVPFYGYSPAYIATDTSGNH 183

Query: 191 KLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYSHHHHHQHQHQSHHQAAAM 250
           KL+Y+GG+Y+NG  H++Q+YPGQAM+ GANTLMP YPFY +             HQ+ AM
Sbjct: 184 KLNYTGGSYMNG--HFSQVYPGQAMV-GANTLMPMYPFYHF-------------HQSQAM 243

Query: 251 GLP-AHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 290
           GLP AHIFPP++AGP+T  P I+SKP  P    P +VCL VE
Sbjct: 244 GLPAAHIFPPTTAGPMTTVPTIMSKP--PSIAPPSAVCLAVE 253
[Close]
BLAST of Spo16629.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFY4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_189960 PE=4 SV=1)

HSP 1 Score: 576.2 bits (1484), Expect = 2.200e-161
Identity = 289/291 (99.31%), Postives = 289/291 (99.31%), Query Frame = 1 

		  

Query: 1   MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI 60
           MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI
Sbjct: 1   MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI 60

Query: 61  TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQ 120
           TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQ
Sbjct: 61  TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQ 120

Query: 121 VSNNSNTNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYI 180
           VSNNSNTNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYI
Sbjct: 121 VSNNSNTNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYI 180

Query: 181 AADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYS--HHHHHQHQ 240
           AADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYS  HHHHHQHQ
Sbjct: 181 AADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYSHHHHHHHQHQ 240

Query: 241 HQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 290
           HQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE
Sbjct: 241 HQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 291
[Close]
BLAST of Spo16629.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B6K6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_007350 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 4.700e-124
Identity = 240/300 (80.00%), Postives = 257/300 (85.67%), Query Frame = 1 

		  

Query: 1   MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI 60
           MTMSDYNNN+N N KS FGDTTLTKVFVGGLAWETPKQ+L+EHFEKYGEI EAVIISDKI
Sbjct: 1   MTMSDYNNNNN-NDKSPFGDTTLTKVFVGGLAWETPKQALFEHFEKYGEIFEAVIISDKI 60

Query: 61  TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQP-YQR 120
           TGRSKGYGFVTFKE EAAKKACEDATPIINGRRANCNLAALGARRPPR+SSTTPQP +QR
Sbjct: 61  TGRSKGYGFVTFKEPEAAKKACEDATPIINGRRANCNLAALGARRPPRSSSTTPQPHHQR 120

Query: 121 QVSNNSNTNVGGTTTAAAPTA-----AGHVQWYYPA--AAGRASSPTTTTPFHP---HQA 180
           Q SN SN + G    A +PT+     AGHVQWYYPA  A+GRA+SPT TTPFH    HQA
Sbjct: 121 QASNGSNGSGGSGGNALSPTSAAAPPAGHVQWYYPAAVASGRATSPTPTTPFHAHQHHQA 180

Query: 181 VPFYGYSPTYIAADVGYNHKLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPY 240
           VPFYGYSPTYIAADVGYNHKLSYSGGAYINGG HY QMYPGQA+MAGANTLMP YPFYPY
Sbjct: 181 VPFYGYSPTYIAADVGYNHKLSYSGGAYINGG-HYPQMYPGQALMAGANTLMPMYPFYPY 240

Query: 241 SHHHHHQHQHQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 290
           SH HHH   HQ  H  AAMGLPAHIFPP+SAGP+T   PII+KP TP+C+ PP+VCLTVE
Sbjct: 241 SHQHHH---HQQPHHQAAMGLPAHIFPPTSAGPMTAPLPIITKPTTPVCIAPPTVCLTVE 295
[Close]
BLAST of Spo16629.1 vs. UniProtKB/TrEMBL
Match: M5XKH9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026384mg PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 1.600e-84
Identity = 180/276 (65.22%), Postives = 202/276 (73.19%), Query Frame = 1 

		  

Query: 1   MTMSDYNNNDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKI 60
           MTMS      N+    QFGDTTLTKVFVGGLAWETPK++L EHF+KYGEILEAVIISDK+
Sbjct: 1   MTMS------NNVINGQFGDTTLTKVFVGGLAWETPKEALREHFDKYGEILEAVIISDKL 60

Query: 61  TGRSKGYGFVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQ 120
           TGRSKGYGFVTFKEAEAAKKACEDATP+INGRRANCNLA+LGARRP  AS+TTP P    
Sbjct: 61  TGRSKGYGFVTFKEAEAAKKACEDATPVINGRRANCNLASLGARRPRSASTTTPPP-PPP 120

Query: 121 VSNNSNTNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFH--PHQAVPFYGYSPT 180
               SN   GG   + +P  A HVQWYYPA AG     T  TPFH   HQ VPFYGYSPT
Sbjct: 121 PQRGSN---GGGARSMSPAPANHVQWYYPAPAG-----TPATPFHHQHHQPVPFYGYSPT 180

Query: 181 YIAADVGYNHKLSYSGGAYINGGQHYT-QMYPGQAMMAGANTLMPYYPFYPYSHHHHHQH 240
           YIAAD+ YNHKL Y+GGAY+NG  HY+ Q+YPGQ M+ G NTLMP YP Y Y        
Sbjct: 181 YIAADISYNHKLGYTGGAYMNG--HYSPQVYPGQPMV-GPNTLMPMYPLYHY-------- 240

Query: 241 QHQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKP 274
               HHQ+  MGLPAHIFPP+++G +   P I+SKP
Sbjct: 241 ----HHQSHTMGLPAHIFPPTTSGHVAAVPTIMSKP 246
[Close]
BLAST of Spo16629.1 vs. UniProtKB/TrEMBL
Match: A9P7Z9_POPTR (RNA recognition motif-containing family protein OS=Populus trichocarpa GN=POPTR_0010s22380g PE=2 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 1.600e-84
Identity = 183/282 (64.89%), Postives = 209/282 (74.11%), Query Frame = 1 

		  

Query: 11  NSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFV 70
           ++N   QFGDTTLTKVFVGGLAWETPK ++ EHFEKYGEILEAVIISDKITGRSKGYGFV
Sbjct: 4   SNNIAGQFGDTTLTKVFVGGLAWETPKDAMREHFEKYGEILEAVIISDKITGRSKGYGFV 63

Query: 71  TFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQVSNNSNTNVG 130
           TFKEAE+AKKACEDA+PIINGRRANCNLA+LGARRP    S TP P Q+      N N G
Sbjct: 64  TFKEAESAKKACEDASPIINGRRANCNLASLGARRP---RSATPAPPQQ----GPNINAG 123

Query: 131 GTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFH--PHQAVPFYGYSPTYIAADVGYNH 190
             +T AAP  A HVQWYYPA +  A+S     PFH   HQAVPFYGYSP YIA D   NH
Sbjct: 124 PRSTPAAP--ANHVQWYYPAGSAAAAS-----PFHHQHHQAVPFYGYSPAYIATDTSGNH 183

Query: 191 KLSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYSHHHHHQHQHQSHHQAAAM 250
           KL+Y+GG+Y+NG  H++Q+YPGQAM+ GANTLMP YPFY +             HQ+ AM
Sbjct: 184 KLNYTGGSYMNG--HFSQVYPGQAMV-GANTLMPMYPFYHF-------------HQSQAM 243

Query: 251 GLP-AHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 290
           GLP AHIFPP++AGP+T  P I+SKP  P    P +VCL VE
Sbjct: 244 GLPAAHIFPPTTAGPMTTVPTIMSKP--PSIAPPSAVCLAVE 253
[Close]
BLAST of Spo16629.1 vs. UniProtKB/TrEMBL
Match: F6HNK5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g03610 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 2.100e-84
Identity = 178/280 (63.57%), Postives = 207/280 (73.93%), Query Frame = 1 

		  

Query: 12  SNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFVT 71
           SN   QFGDTTLTKVFVGGLAWETPK+++ +HFEKYGEILEAVIISDK+TGRSKGYGFVT
Sbjct: 4   SNAIGQFGDTTLTKVFVGGLAWETPKEAMRDHFEKYGEILEAVIISDKLTGRSKGYGFVT 63

Query: 72  FKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQVSNNSNTNVGG 131
           FKE EAAKKACEDATP+INGRRANCNLA+LGARRP  A+S+TP P+Q        +N G 
Sbjct: 64  FKEPEAAKKACEDATPMINGRRANCNLASLGARRPRSAASSTP-PHQ-------GSNGGS 123

Query: 132 TTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFH--PHQAVPFYGYSPTYIAADVGYNHK 191
             T+AAP  A HVQWYYPA        T   PFH   HQAVPFYGYSP YIAAD+ YNHK
Sbjct: 124 RPTSAAP--ASHVQWYYPAG-------TPAPPFHHQHHQAVPFYGYSPAYIAADISYNHK 183

Query: 192 LSYSGGAYINGGQHYTQMYPGQAMMAGANTLMPYYPFYPYSHHHHHQHQHQSHHQAAAMG 251
           LSY+GG+Y+NG  H++Q+YPGQAM+ GAN LMP YPFY +             HQ+  MG
Sbjct: 184 LSYTGGSYMNG--HFSQVYPGQAMV-GANALMPMYPFYHF-------------HQSQTMG 243

Query: 252 LPAHIFPPSSAGPITVSPPIISKPITPICVTPPSVCLTVE 290
            PAH+FPP++ GP+   P IISKP +   + P +VCL VE
Sbjct: 244 HPAHMFPPTTVGPMPTVPAIISKPTS---MAPNTVCLAVE 247
[Close]
BLAST of Spo16629.1 vs. ExPASy Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 9.600e-54
Identity = 127/279 (45.52%), Postives = 162/279 (58.06%), Query Frame = 1 

		  

Query: 11  NSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFV 70
           ++N    FGDT LTKVFVGGLAW+T K+++Y+HF KYG+ILEAVIISDK+T RSKGYGFV
Sbjct: 4   SNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFV 63

Query: 71  TFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQVSNNSNTNVG 130
           TFK+A+AA +ACED+TPIINGRRANCNLA+LG R     + T+PQ    Q   N N    
Sbjct: 64  TFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQ----QGPKNGN---- 123

Query: 131 GTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYIAADVGYNHKL 190
               A  P    H QWYYP+                HQAVPFYGY   Y+A ++ +N K+
Sbjct: 124 ---RATPPHVGNHSQWYYPSGFTNQQHQQQN-----HQAVPFYGYPSAYVAPNMTFNQKV 183

Query: 191 SYSGGAYINGGQHYTQMYP------------------GQAMMAGANTLMPYYPFYPYSHH 250
            Y GG Y+NG  +Y QM P                  G+ M+  A+ ++P+Y  YPY   
Sbjct: 184 GYVGGTYMNG--YYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPY--- 243

Query: 251 HHHQHQHQSHHQAAAMGLPAHIFPPSSAGPITVSPPIIS 272
                     HQ+ A+G P     PS + P++ S P IS
Sbjct: 244 ----------HQSQAIGFP----QPSFSKPLSFSTPPIS 247
[Close]
BLAST of Spo16629.1 vs. ExPASy Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.300e-22
Identity = 52/93 (55.91%), Postives = 71/93 (76.34%), Query Frame = 1 

		  

Query: 20  DTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFVTFKEAEAAK 79
           DTT TK+FVGGL + T   SL ++FE +G+I EAV+I+D+ TG+S+GYGFVT  +  AA+
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 80  KACEDATPIINGRRANCNLAALGARRPPRASST 113
           +AC+D  PII+GR+AN NLA LGA+  PR+  T
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK--PRSIQT 97
[Close]
BLAST of Spo16629.1 vs. ExPASy Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 4.400e-22
Identity = 52/93 (55.91%), Postives = 71/93 (76.34%), Query Frame = 1 

		  

Query: 20  DTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFVTFKEAEAAK 79
           DTT TK+FVGGL + T   SL ++FE +G+I EAV+I+D+ TG+S+GYGFVT  +  AA+
Sbjct: 30  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89

Query: 80  KACEDATPIINGRRANCNLAALGARRPPRASST 113
           +AC+D  PII+GR+AN NLA LGA+  PR+  T
Sbjct: 90  RACKDPNPIIDGRKANVNLAYLGAK--PRSLQT 120
[Close]
BLAST of Spo16629.1 vs. ExPASy Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.400e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 1 

		  

Query: 20  DTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFVTFKEAEAAK 79
           DTT TK+FVGGL + T   SL ++FE +G+I EAV+I+D+ TG+S+GYGFVT  +  AA+
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66

Query: 80  KACEDATPIINGRRANCNLAALGAR 105
           +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91
[Close]
BLAST of Spo16629.1 vs. ExPASy Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.400e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 1 

		  

Query: 20  DTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFVTFKEAEAAK 79
           DTT TK+FVGGL + T   SL ++FE +G+I EAV+I+D+ TG+S+GYGFVT  +  AA+
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 80  KACEDATPIINGRRANCNLAALGAR 105
           +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91
[Close]
BLAST of Spo16629.1 vs. TAIR (Arabidopsis)
Match: AT3G54770.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 211.8 bits (538), Expect = 5.400e-55
Identity = 127/279 (45.52%), Postives = 162/279 (58.06%), Query Frame = 1 

		  

Query: 11  NSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFV 70
           ++N    FGDT LTKVFVGGLAW+T K+++Y+HF KYG+ILEAVIISDK+T RSKGYGFV
Sbjct: 4   SNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFV 63

Query: 71  TFKEAEAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQVSNNSNTNVG 130
           TFK+A+AA +ACED+TPIINGRRANCNLA+LG R     + T+PQ    Q   N N    
Sbjct: 64  TFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQ----QGPKNGN---- 123

Query: 131 GTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYIAADVGYNHKL 190
               A  P    H QWYYP+                HQAVPFYGY   Y+A ++ +N K+
Sbjct: 124 ---RATPPHVGNHSQWYYPSGFTNQQHQQQN-----HQAVPFYGYPSAYVAPNMTFNQKV 183

Query: 191 SYSGGAYINGGQHYTQMYP------------------GQAMMAGANTLMPYYPFYPYSHH 250
            Y GG Y+NG  +Y QM P                  G+ M+  A+ ++P+Y  YPY   
Sbjct: 184 GYVGGTYMNG--YYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPY--- 243

Query: 251 HHHQHQHQSHHQAAAMGLPAHIFPPSSAGPITVSPPIIS 272
                     HQ+ A+G P     PS + P++ S P IS
Sbjct: 244 ----------HQSQAIGFP----QPSFSKPLSFSTPPIS 247
[Close]
BLAST of Spo16629.1 vs. TAIR (Arabidopsis)
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 144.1 bits (362), Expect = 1.400e-34
Identity = 93/198 (46.97%), Postives = 114/198 (57.58%), Query Frame = 1 

		  

Query: 16  SQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFVTFKEA 75
           S FGDTT TKVFVGGLAWET  ++L +HFE+YGEILEAV+I+DK TGRSKGYGFVTF++ 
Sbjct: 16  SPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDP 75

Query: 76  EAAKKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQVSNNSNTNVGGTTTA 135
           EAA++AC D TPII+GRRANCNLA+LG  RPP   +  P             N+ G    
Sbjct: 76  EAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIP-------------NMPGRLRP 135

Query: 136 AAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSP----TYIAADVGYNHKLS 195
           A+P   G+VQ    +  G           +P+Q    Y Y       Y     G  +  S
Sbjct: 136 ASP-YIGNVQGPRGSLIGN----------YPYQQPLPYNYQQGVVYPYGVTAYGPEYMYS 189

Query: 196 YSGGAYI-NGGQHYTQMY 209
            S G Y    GQ Y Q+Y
Sbjct: 196 QSQGLYSPYMGQQYLQVY 189
[Close]
BLAST of Spo16629.1 vs. TAIR (Arabidopsis)
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 140.6 bits (353), Expect = 1.500e-33
Identity = 112/277 (40.43%), Postives = 145/277 (52.35%), Query Frame = 1 

		  

Query: 9   NDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYG 68
           +  S  +S FGDTT TKVFVGGLAWETP   +  +FE++GEILEAVII+DK TG+SKGYG
Sbjct: 2   SQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYG 61

Query: 69  FVTFKEAEAAKKACEDATPIINGRRANCNLAALGARR--PPRASSTTPQPYQRQVSNNSN 128
           FVTF+E+++A +A  D  P+I+GR+ANCN+A+ G  R  PPR    T  P Q Q S   +
Sbjct: 62  FVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQ-SGGPS 121

Query: 129 TNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYIAADVGY 188
           T  G     AAP          PAAA             P    P YGY  TY     GY
Sbjct: 122 TYTG----MAAPLP--------PAAA-------------PQLMYPSYGY--TYNPDQFGY 181

Query: 189 NHKLSYSGGAYINGGQHYTQMYPGQAMMAGAN--TLMP---YY------PFYPYSHHHH- 248
           +  L  +        Q   Q+Y G A    ++  T+MP   YY      P  PY HHHH 
Sbjct: 182 HQALYNTQLQQAQYYQQQQQLYGGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHL 241

Query: 249 --HQHQHQSHHQAAAMGLPAHIFPPSSAGPITVSPPI 270
               +  Q HHQ      P+ +  PS++   + +PP+
Sbjct: 242 PQPYNPQQHHHQ--RFSSPSFLVYPSNS---SFAPPL 245
[Close]
BLAST of Spo16629.1 vs. TAIR (Arabidopsis)
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 135.2 bits (339), Expect = 6.500e-32
Identity = 107/284 (37.68%), Postives = 145/284 (51.06%), Query Frame = 1 

		  

Query: 9   NDNSNTKSQFGDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYG 68
           ++ S  +S FGDTT TKVFVGGLAWETP   +  +F+++GEILEAVII+DK TG+SKGYG
Sbjct: 2   SNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61

Query: 69  FVTFKEAEAAKKACEDATPIINGRRANCNLAALGARRP--PRASSTTPQPYQRQVSNNSN 128
           FVTF+++++A +A  D  P+I+GR+ANCN+A+ G  RP  PR       P Q Q    S+
Sbjct: 62  FVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGGQSS 121

Query: 129 TNVGGTTTAAAPTAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYGYSPTYIAADVGY 188
                T  AA    A   Q  YP+                      YGY  TY  ++ GY
Sbjct: 122 Y----TGMAAPVQQAAAAQLMYPS----------------------YGY--TY-NSEYGY 181

Query: 189 NHKLSYSGGAYINGGQHY-TQMY-PGQAMMAGANTLMPYYPFY-------PYSHH----- 248
            H+  Y+  A +   Q+Y  QMY  G A    ++ +MP   +Y       PY HH     
Sbjct: 182 -HQALYN--AQLQQAQYYQQQMYGGGGATSPSSSNIMPSPYYYLQAPSPRPYLHHQQHYQ 241

Query: 249 -HHHQHQHQSHHQAAAMGLPAHIFPPSSAGPITVSPPIISKPIT 276
            HHHQ Q Q   Q         I+P +   P   + P    P++
Sbjct: 242 YHHHQQQQQQQQQRLPSASSYLIYPSNVEAPTPSNVPTSQGPLS 253
[Close]
BLAST of Spo16629.1 vs. TAIR (Arabidopsis)
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 132.5 bits (332), Expect = 4.200e-31
Identity = 104/274 (37.96%), Postives = 138/274 (50.36%), Query Frame = 1 

		  

Query: 19  GDTTLTKVFVGGLAWETPKQSLYEHFEKYGEILEAVIISDKITGRSKGYGFVTFKEAEAA 78
           GDTT TKVFVGGLAWET K+++ +HFE++GEILEAV+I+DK +GRSKGYGFVTF+EAEAA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 79  KKACEDATPIINGRRANCNLAALGARRPPRASSTTPQPYQRQVSNNSNTNVGGTTTAAAP 138
           + AC DATP+I+GRRANCNLA+LG +   R+  +TP        NN    +    T   P
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQ---RSKPSTPNHGGGGRINNMRVMMSTMQTGFGP 127

Query: 139 TAAGHVQWYYPAAAGRASSPTTTTPFHPHQAVPFYG---YSPTYIAADVG-YNHKLSYSG 198
                              P T T  +PH  +  +G   YSP Y +     Y      SG
Sbjct: 128 PP--------------PPQPPTFT-HYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSG 187

Query: 199 GAYINGGQHYTQMYPGQAMMAGANTLMPYYP---------FYPYSHHHHHQHQHQSHHQA 258
           G Y   G +  +   G  + A A +  P+YP         F      +HH   +  HH +
Sbjct: 188 GQY---GVYGNRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQPQPFYHHLSSYNPHHYS 247

Query: 259 AAMGLPAHIFPPSSAGPITVSPPIISKPITPICV 280
                P       S   ++ S    S P+  + V
Sbjct: 248 P----PTFSMQQGSRNRLSASTTSYSLPLKKLRV 256
The following BLAST results are available for this feature:
BLAST of Spo16629.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902151071|gb|KNA05481.1|3.1e-16199.3hypothetical protein SOVF_1899... [more]
gi|731375298|ref|XP_010667209.1|6.8e-12480.0PREDICTED: RNA-binding protein... [more]
gi|731375294|ref|XP_010667207.1|1.6e-12079.5PREDICTED: RNA-binding protein... [more]
gi|645255182|ref|XP_008233380.1|7.3e-8663.0PREDICTED: RNA-binding protein... [more]
gi|224109676|ref|XP_002315274.1|2.4e-8464.8RNA recognition motif-containi... [more]
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BLAST of Spo16629.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QFY4_SPIOL2.2e-16199.3Uncharacterized protein OS=Spi... [more]
A0A0J8B6K6_BETVU4.7e-12480.0Uncharacterized protein OS=Bet... [more]
M5XKH9_PRUPE1.6e-8465.2Uncharacterized protein (Fragm... [more]
A9P7Z9_POPTR1.6e-8464.8RNA recognition motif-containi... [more]
F6HNK5_VITVI2.1e-8463.5Putative uncharacterized prote... [more]
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BLAST of Spo16629.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ARP1_ARATH9.6e-5445.5Probable RNA-binding protein A... [more]
RBM38_CHICK3.3e-2255.9RNA-binding protein 38 OS=Gall... [more]
RBM38_HUMAN4.4e-2255.9RNA-binding protein 38 OS=Homo... [more]
RBM38_XENTR7.4e-2257.6RNA-binding protein 38 OS=Xeno... [more]
RB24A_XENLA7.4e-2257.6RNA-binding protein 24-A OS=Xe... [more]
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BLAST of Spo16629.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT3G54770.15.4e-5545.5RNA-binding (RRM/RBD/RNP motif... [more]
AT1G76460.11.4e-3446.9RNA-binding (RRM/RBD/RNP motif... [more]
AT1G78260.11.5e-3340.4RNA-binding (RRM/RBD/RNP motif... [more]
AT1G22330.16.5e-3237.6RNA-binding (RRM/RBD/RNP motif... [more]
AT1G22910.34.2e-3137.9RNA-binding (RRM/RBD/RNP motif... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 26..83
score: 2.0
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 25..97
score: 2.6
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 24..101
score: 16
IPR012677Nucleotide-binding alpha-beta plait domainGENE3D3.30.70.330coord: 7..100
score: 1.6
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 20..125
score: 9.0
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 267..276
score: 2.3E-35coord: 20..105
score: 2.3
NoneNo IPR availablePANTHERPTHR24012:SF421SUBFAMILY NOT NAMEDcoord: 267..276
score: 2.3E-35coord: 20..105
score: 2.3

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009628 response to abiotic stimulus
biological_process GO:0019872 streptomycin biosynthetic process
biological_process GO:0019852 L-ascorbic acid metabolic process
biological_process GO:0009627 systemic acquired resistance
biological_process GO:0009735 response to cytokinin
biological_process GO:0031347 regulation of defense response
biological_process GO:0015749 monosaccharide transmembrane transport
biological_process GO:0034219 carbohydrate transmembrane transport
biological_process GO:0048544 recognition of pollen
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009308 amine metabolic process
biological_process GO:0016310 phosphorylation
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0019953 sexual reproduction
biological_process GO:0006013 mannose metabolic process
biological_process GO:0010817 regulation of hormone levels
biological_process GO:0006012 galactose metabolic process
biological_process GO:0006950 response to stress
biological_process GO:0046835 carbohydrate phosphorylation
biological_process GO:0006040 amino sugar metabolic process
biological_process GO:0006833 water transport
biological_process GO:0006011 UDP-glucose metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0048767 root hair elongation
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0009651 response to salt stress
biological_process GO:0000271 polysaccharide biosynthetic process
biological_process GO:0009247 glycolipid biosynthetic process
biological_process GO:0046686 response to cadmium ion
biological_process GO:0043069 negative regulation of programmed cell death
biological_process GO:1900994 (-)-secologanin biosynthetic process
biological_process GO:0006694 steroid biosynthetic process
biological_process GO:0032259 methylation
biological_process GO:0010048 vernalization response
biological_process GO:0055085 transmembrane transport
biological_process GO:0006487 protein N-linked glycosylation
biological_process GO:0048440 carpel development
biological_process GO:0006073 cellular glucan metabolic process
biological_process GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process GO:0009409 response to cold
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0030259 lipid glycosylation
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0030968 endoplasmic reticulum unfolded protein response
biological_process GO:0050832 defense response to fungus
biological_process GO:0006865 amino acid transport
biological_process GO:0045491 xylan metabolic process
biological_process GO:0000041 transition metal ion transport
biological_process GO:0009751 response to salicylic acid
biological_process GO:0012501 programmed cell death
biological_process GO:0042742 defense response to bacterium
biological_process GO:0009267 cellular response to starvation
biological_process GO:0051258 protein polymerization
biological_process GO:0007017 microtubule-based process
biological_process GO:0071258 cellular response to gravity
biological_process GO:0009750 response to fructose
biological_process GO:0006000 fructose metabolic process
biological_process GO:0008361 regulation of cell size
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009926 auxin polar transport
biological_process GO:0043481 anthocyanin accumulation in tissues in response to UV light
biological_process GO:0090332 stomatal closure
biological_process GO:0030243 cellulose metabolic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006665 sphingolipid metabolic process
biological_process GO:0009832 plant-type cell wall biogenesis
biological_process GO:0009932 cell tip growth
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:0006810 transport
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0006508 proteolysis
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0043255 regulation of carbohydrate biosynthetic process
biological_process GO:0006816 calcium ion transport
biological_process GO:0030036 actin cytoskeleton organization
biological_process GO:0030244 cellulose biosynthetic process
biological_process GO:0006096 glycolytic process
biological_process GO:0009834 plant-type secondary cell wall biogenesis
biological_process GO:0009833 plant-type primary cell wall biogenesis
biological_process GO:0007389 pattern specification process
biological_process GO:0009825 multidimensional cell growth
biological_process GO:0009809 lignin biosynthetic process
biological_process GO:0071555 cell wall organization
biological_process GO:0007030 Golgi organization
biological_process GO:0006972 hyperosmotic response
biological_process GO:0008152 metabolic process
biological_process GO:0007275 multicellular organism development
biological_process GO:0016049 cell growth
biological_process GO:0006952 defense response
biological_process GO:0000165 MAPK cascade
cellular_component GO:0005737 cytoplasm
cellular_component GO:0044424 intracellular part
cellular_component GO:0045298 tubulin complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005829 cytosol
cellular_component GO:0005622 intracellular
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005874 microtubule
cellular_component GO:0009506 plasmodesma
cellular_component GO:0048046 apoplast
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0005618 cell wall
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005768 endosome
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0046658 anchored component of plasma membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0005777 peroxisome
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005576 extracellular region
cellular_component GO:0005856 cytoskeleton
cellular_component GO:0005634 nucleus
cellular_component GO:0005773 vacuole
cellular_component GO:0005794 Golgi apparatus
molecular_function GO:0016762 xyloglucan:xyloglucosyl transferase activity
molecular_function GO:0005200 structural constituent of cytoskeleton
molecular_function GO:0005524 ATP binding
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0090353 polygalacturonase inhibitor activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0005515 protein binding
molecular_function GO:0038023 signaling receptor activity
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function GO:0005215 transporter activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0016760 cellulose synthase (UDP-forming) activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0042973 glucan endo-1,3-beta-D-glucosidase activity
molecular_function GO:0004396 hexokinase activity
molecular_function GO:0016301 kinase activity
molecular_function GO:0016773 phosphotransferase activity, alcohol group as acceptor
molecular_function GO:0005507 copper ion binding
molecular_function GO:0008131 primary amine oxidase activity
molecular_function GO:0048038 quinone binding
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005057 obsolete signal transducer activity, downstream of receptor
molecular_function GO:0032440 2-alkenal reductase [NAD(P)] activity
molecular_function GO:0005351 carbohydrate:proton symporter activity
molecular_function GO:0015145 monosaccharide transmembrane transporter activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0008447 L-ascorbate oxidase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0016758 transferase activity, transferring hexosyl groups
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0035251 UDP-glucosyltransferase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo238470.81Barchart | Table
Spo048840.79Barchart | Table
Spo010730.78Barchart | Table
Spo135110.77Barchart | Table
Spo209660.76Barchart | Table
Spo272080.76Barchart | Table
Spo154280.75Barchart | Table
Spo057520.75Barchart | Table
Spo215420.74Barchart | Table
Spo168600.74Barchart | Table
Spo070490.74Barchart | Table
Spo035770.73Barchart | Table
Spo258570.73Barchart | Table
Spo222600.73Barchart | Table
Spo076540.73Barchart | Table
Spo079190.73Barchart | Table
Spo018390.73Barchart | Table
Spo192720.73Barchart | Table
Spo154020.72Barchart | Table
Spo210310.72Barchart | Table
Spo048700.72Barchart | Table
Spo038570.72Barchart | Table
Spo158500.72Barchart | Table
Spo044200.72Barchart | Table
Spo098360.71Barchart | Table
Spo160390.71Barchart | Table
Spo189190.71Barchart | Table
Spo114190.71Barchart | Table
Spo200460.71Barchart | Table
Spo039950.71Barchart | Table
Spo228760.71Barchart | Table
Spo146970.70Barchart | Table
Spo193270.70Barchart | Table
Spo078640.70Barchart | Table
Spo201880.70Barchart | Table
Spo266640.69Barchart | Table
Spo161390.69Barchart | Table
Spo027820.69Barchart | Table
Spo093930.69Barchart | Table
Spo018150.69Barchart | Table
Spo117730.69Barchart | Table
Spo150810.69Barchart | Table
Spo107520.68Barchart | Table
Spo013080.68Barchart | Table
Spo018680.68Barchart | Table
Spo055730.68Barchart | Table
Spo075630.68Barchart | Table
Spo119100.68Barchart | Table
Spo148990.68Barchart | Table
Spo168170.68Barchart | Table
Spo186890.67Barchart | Table
Spo032310.67Barchart | Table
Spo003710.67Barchart | Table
Spo206280.67Barchart | Table
Spo170850.67Barchart | Table
Spo216130.67Barchart | Table
Spo052130.67Barchart | Table
Spo176280.67Barchart | Table
Spo181200.67Barchart | Table
Spo242760.67Barchart | Table
Spo245160.67Barchart | Table
Spo249980.67Barchart | Table
Spo129970.67Barchart | Table
Spo244270.66Barchart | Table
Spo142360.66Barchart | Table
Spo122260.66Barchart | Table
Spo222680.66Barchart | Table
Spo056910.66Barchart | Table
Spo035070.66Barchart | Table
Spo143850.66Barchart | Table
Spo268510.66Barchart | Table
Spo168310.66Barchart | Table
Spo154590.65Barchart | Table
Spo122270.65Barchart | Table
Spo083590.65Barchart | Table
Spo083040.65Barchart | Table
Spo044210.65Barchart | Table
Spo236300.65Barchart | Table
Spo043290.65Barchart | Table
Spo244400.65Barchart | Table
Spo256070.65Barchart | Table
Spo004630.65Barchart | Table