Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTAGAGTTAAAGGAAAAGGCAAGAAGCAGACCGTGTTTACAGCTAAAGATGATGTAGAGAACGCGAAAGGGGAGAACATTGAGGCATCTAAGAGAAGGGGAAGGCCACAGAAATCATTGAAGGAAGAGGTTGGAGATGAAGAGTTTGAGAAAATAGTGAATTTTGATGAAAATGCTAATAGTTCAATAACAAGTAGAAGCTCAAAAGGTGAAATTACTGCTATGAATGGAACAAAAAGGAAGAGGCCGTCACAAGTGAAGGAGAATTCAGATACTGCCGAGGTGGAAAATGGTTCAGAAGCCAATTCTAGTACTGAGGGCTTTGTGAAATCTGTAGGGTTTAGACAAAATGGAAGCAGGAGAAAAAGCAAGCCTCACCGAGCTGCTGAAGTTGGAGTAAAATGCAAATGA ATGGGTAGAGTTAAAGGAAAAGGCAAGAAGCAGACCGTGTTTACAGCTAAAGATGATGTAGAGAACGCGAAAGGGGAGAACATTGAGGCATCTAAGAGAAGGGGAAGGCCACAGAAATCATTGAAGGAAGAGGTTGGAGATGAAGAGTTTGAGAAAATAGTGAATTTTGATGAAAATGCTAATAGTTCAATAACAAGTAGAAGCTCAAAAGGTGAAATTACTGCTATGAATGGAACAAAAAGGAAGAGGCCGTCACAAGTGAAGGAGAATTCAGATACTGCCGAGGTGGAAAATGGTTCAGAAGCCAATTCTAGTACTGAGGGCTTTGTGAAATCTGTAGGGTTTAGACAAAATGGAAGCAGGAGAAAAAGCAAGCCTCACCGAGCTGCTGAAGTTGGAGTAAAATGCAAATGA ATGGGTAGAGTTAAAGGAAAAGGCAAGAAGCAGACCGTGTTTACAGCTAAAGATGATGTAGAGAACGCGAAAGGGGAGAACATTGAGGCATCTAAGAGAAGGGGAAGGCCACAGAAATCATTGAAGGAAGAGGTTGGAGATGAAGAGTTTGAGAAAATAGTGAATTTTGATGAAAATGCTAATAGTTCAATAACAAGTAGAAGCTCAAAAGGTGAAATTACTGCTATGAATGGAACAAAAAGGAAGAGGCCGTCACAAGTGAAGGAGAATTCAGATACTGCCGAGGTGGAAAATGGTTCAGAAGCCAATTCTAGTACTGAGGGCTTTGTGAAATCTGTAGGGTTTAGACAAAATGGAAGCAGGAGAAAAAGCAAGCCTCACCGAGCTGCTGAAGTTGGAGTAAAATGCAAATGA MGRVKGKGKKQTVFTAKDDVENAKGENIEASKRRGRPQKSLKEEVGDEEFEKIVNFDENANSSITSRSSKGEITAMNGTKRKRPSQVKENSDTAEVENGSEANSSTEGFVKSVGFRQNGSRRKSKPHRAAEVGVKCK Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo16303.1 vs. NCBI nr
Match: gi|902225059|gb|KNA19947.1| (hypothetical protein SOVF_056810 [Spinacia oleracea]) HSP 1 Score: 255.0 bits (650), Expect = 7.500e-65 Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1
BLAST of Spo16303.1 vs. NCBI nr
Match: gi|731324153|ref|XP_010672817.1| (PREDICTED: uncharacterized protein LOC104889319 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 155.2 bits (391), Expect = 8.100e-35 Identity = 87/137 (63.50%), Postives = 103/137 (75.18%), Query Frame = 1
BLAST of Spo16303.1 vs. NCBI nr
Match: gi|147864059|emb|CAN83221.1| (hypothetical protein VITISV_031365 [Vitis vinifera]) HSP 1 Score: 126.7 bits (317), Expect = 3.100e-26 Identity = 76/140 (54.29%), Postives = 96/140 (68.57%), Query Frame = 1
BLAST of Spo16303.1 vs. NCBI nr
Match: gi|225441405|ref|XP_002278550.1| (PREDICTED: uncharacterized protein LOC100248625 [Vitis vinifera]) HSP 1 Score: 126.7 bits (317), Expect = 3.100e-26 Identity = 76/140 (54.29%), Postives = 96/140 (68.57%), Query Frame = 1
BLAST of Spo16303.1 vs. NCBI nr
Match: gi|703065085|ref|XP_010087361.1| (hypothetical protein L484_018387 [Morus notabilis]) HSP 1 Score: 126.7 bits (317), Expect = 3.100e-26 Identity = 79/138 (57.25%), Postives = 94/138 (68.12%), Query Frame = 1
BLAST of Spo16303.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RM68_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_056810 PE=4 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 5.200e-65 Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1
BLAST of Spo16303.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CTF5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g060440 PE=4 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 5.600e-35 Identity = 87/137 (63.50%), Postives = 103/137 (75.18%), Query Frame = 1
BLAST of Spo16303.1 vs. UniProtKB/TrEMBL
Match: W9QYA2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018387 PE=4 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 2.200e-26 Identity = 79/138 (57.25%), Postives = 94/138 (68.12%), Query Frame = 1
BLAST of Spo16303.1 vs. UniProtKB/TrEMBL
Match: F6HLK3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g06280 PE=4 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 2.200e-26 Identity = 76/140 (54.29%), Postives = 96/140 (68.57%), Query Frame = 1
BLAST of Spo16303.1 vs. UniProtKB/TrEMBL
Match: A5BGN7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031365 PE=4 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 2.200e-26 Identity = 76/140 (54.29%), Postives = 96/140 (68.57%), Query Frame = 1
BLAST of Spo16303.1 vs. TAIR (Arabidopsis)
Match: AT3G57930.1 (unknown protein) HSP 1 Score: 91.3 bits (225), Expect = 5.100e-19 Identity = 68/146 (46.58%), Postives = 96/146 (65.75%), Query Frame = 1
BLAST of Spo16303.1 vs. TAIR (Arabidopsis)
Match: AT2G42190.1 (unknown protein) HSP 1 Score: 77.0 bits (188), Expect = 9.900e-15 Identity = 57/139 (41.01%), Postives = 78/139 (56.12%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo16303.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo16303.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo16303.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo16303.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
|