Spo16196 (gene)

Overview
NameSpo16196
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPhot (Precursor)
Locationchr4 : 100511586 .. 100512383 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAATTGGATAACCAACATTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTCTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTTGGGTGCCATTATTCCTACTTCTACAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCCGCTCCAGTTGCAGTGGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAACTTTTCTGATGGTATGCCTCTATGAATCTCTGGTAATTTCAACTTTATGATTATATTCCAGGCTGAGAACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGTTGGTGTATTCGGTGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACATAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGAGACTTAAAATTATCCACCTTGAAAACATGA

mRNA sequence

ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAATTGGATAACCAACATTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTCTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTTGGGTGCCATTATTCCTACTTCTACAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCCGCTCCAGTTGCAGTGGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAACTTTTCTGATGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGAGACTTAAAATTATCCACCTTGAAAACATGA

Coding sequence (CDS)

ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAATTGGATAACCAACATTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTCTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCCGGATCTCTACTTTACGGAAATAATATTATTTTGGGTGCCATTATTCCTACTTCTACAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCGGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGCTGTTGCATATTCCGCTCCAGTTGCAGTGGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAACTTTTCTGATGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGAGACTTAAAATTATCCACCTTGAAAACATGA

Protein sequence

MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMISTLLTATSVFIIAFIATPPVDIDGIREPVSGSLLYGNNIILGAIIPTSTAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGNFSDGYRFGQEEETYNIVAAHGYFGDLKLSTLKT
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo16196.1Spo16196.1mRNA


Homology
[Close]
BLAST of Spo16196.1 vs. NCBI nr
Match: gi|296086149|emb|CBI31590.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 351.3 bits (900), Expect = 1.100e-93
Identity = 177/222 (79.73%), Postives = 180/222 (81.08%), Query Frame = 1 

		  

Query: 7   RRESESLWGRFCNWITNIENRLYIGWFGVLMISTLLTATSVFIIAFIATPPVDIDGIREP 66
           +RESESLWGRFCNWIT+ ENRLYIGWFGVLMI TLLTATSVFIIAFIA PPVDIDGIREP
Sbjct: 13  KRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREP 72

Query: 67  VSGSLLYGNNIILGAIIPTSTAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACY 126
           VSGSLLYGNNII GAIIPTS AIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACY
Sbjct: 73  VSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACY 132

Query: 127 MGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGNFSD---------------- 186
           MGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQG+FSD                
Sbjct: 133 MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGVAGVFGGSLFSAMHG 192

Query: 187 -------------------GYRFGQEEETYNIVAAHGYFGDL 194
                              GYRFGQEEETYNIVAAHGYFG L
Sbjct: 193 SLVTSSLIRETTENESANAGYRFGQEEETYNIVAAHGYFGRL 234
[Close]
BLAST of Spo16196.1 vs. NCBI nr
Match: gi|953825854|gb|ALP00972.1| (photosystem II protein D1 (chloroplast) [Exormotheca tuberifera])

HSP 1 Score: 350.1 bits (897), Expect = 2.500e-93
Identity = 178/238 (74.79%), Postives = 184/238 (77.31%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMISTLLTATSVFIIAFIATPPVDI 60
           MTA LERRES S+WGRFC+WIT+ ENRLYIGWFGVLMI TLLTATSVFIIAFIA PPVDI
Sbjct: 1   MTATLERRESASIWGRFCDWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIILGAIIPTSTAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNII GAIIPTS AIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGNFSD---------- 180
           LGVACYMGREWELS+RLGMRPWIAVAYSAPVA ATAVFLIYPIGQG+FSD          
Sbjct: 121 LGVACYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 -----------------------------------GYRFGQEEETYNIVAAHGYFGDL 194
                                              GY+FGQEEETYNIVAAHGYFG L
Sbjct: 181 NFTGVFGGSLFSXMHGSLVTSSLIRETTENESANAGYKFGQEEETYNIVAAHGYFGRL 238
[Close]
BLAST of Spo16196.1 vs. NCBI nr
Match: gi|38043824|gb|AAR08472.1| (photosystem II 32 kDa protein [Oedipodium griffithianum])

HSP 1 Score: 347.1 bits (889), Expect = 2.100e-92
Identity = 179/250 (71.60%), Postives = 184/250 (73.60%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMISTLLTATSVFIIAFIATPPVDI 60
           MTA LERRES SLWGRFC+W+T+ ENRLYIGWFGVLMI TLLTATSVFIIAFIA PPVDI
Sbjct: 1   MTATLERRESASLWGRFCDWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIILGAIIPTSTAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNII GAIIPTS AIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGNFSD---------- 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQG+FSD          
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDAFNFMIVFQA 180

Query: 181 -----------------------------------------------GYRFGQEEETYNI 194
                                                          GY+FGQEEETYNI
Sbjct: 181 EHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYKFGQEEETYNI 240
[Close]
BLAST of Spo16196.1 vs. NCBI nr
Match: gi|953825834|gb|ALP00962.1| (photosystem II protein D1 (chloroplast) [Corsinia coriandrina])

HSP 1 Score: 347.1 bits (889), Expect = 2.100e-92
Identity = 177/240 (73.75%), Postives = 183/240 (76.25%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMISTLLTATSVFIIAFIATPPVDI 60
           MTA LERRES S+WGRFC+WIT+ ENRLYIGWFGVLMI TLLTATSVFIIAFIA PPVDI
Sbjct: 1   MTATLERRESASIWGRFCDWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIILGAIIPTSTAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNII GAIIPTS AIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGNFSD---------- 180
           LGVACYMGREWELS+RLGMRPWIAVAYSAPVA ATAVFLIYPIGQG+FSD          
Sbjct: 121 LGVACYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 -------------------------------------GYRFGQEEETYNIVAAHGYFGDL 194
                                                GY+FG EEETYNIVAAHGYFG L
Sbjct: 181 NFMIVFQXXXXXFSAMHGSLVTSSLIRETTENESANAGYKFGXEEETYNIVAAHGYFGRL 240
[Close]
BLAST of Spo16196.1 vs. NCBI nr
Match: gi|902205337|gb|KNA15151.1| (hypothetical protein SOVF_100830 [Spinacia oleracea])

HSP 1 Score: 342.0 bits (876), Expect = 6.800e-91
Identity = 166/171 (97.08%), Postives = 167/171 (97.66%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMISTLLTATSVFIIAFIATPPVDI 60
           MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMI TLLTATSVFIIAFIATPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMIFTLLTATSVFIIAFIATPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIILGAIIPTSTAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNII GAIIPTS AIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGNFSDG 172
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQG+FSDG
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDG 171
[Close]
BLAST of Spo16196.1 vs. UniProtKB/TrEMBL
Match: A0A0S2PKF8_9MARC (Photosystem II protein D1 OS=Exormotheca tuberifera GN=psbA PE=3 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 1.700e-93
Identity = 178/238 (74.79%), Postives = 184/238 (77.31%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMISTLLTATSVFIIAFIATPPVDI 60
           MTA LERRES S+WGRFC+WIT+ ENRLYIGWFGVLMI TLLTATSVFIIAFIA PPVDI
Sbjct: 1   MTATLERRESASIWGRFCDWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIILGAIIPTSTAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNII GAIIPTS AIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGNFSD---------- 180
           LGVACYMGREWELS+RLGMRPWIAVAYSAPVA ATAVFLIYPIGQG+FSD          
Sbjct: 121 LGVACYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 -----------------------------------GYRFGQEEETYNIVAAHGYFGDL 194
                                              GY+FGQEEETYNIVAAHGYFG L
Sbjct: 181 NFTGVFGGSLFSXMHGSLVTSSLIRETTENESANAGYKFGQEEETYNIVAAHGYFGRL 238
[Close]
BLAST of Spo16196.1 vs. UniProtKB/TrEMBL
Match: Q6W3U5_9BRYO (Photosystem II protein D1 OS=Oedipodium griffithianum GN=psbA PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 1.500e-92
Identity = 179/250 (71.60%), Postives = 184/250 (73.60%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMISTLLTATSVFIIAFIATPPVDI 60
           MTA LERRES SLWGRFC+W+T+ ENRLYIGWFGVLMI TLLTATSVFIIAFIA PPVDI
Sbjct: 1   MTATLERRESASLWGRFCDWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIILGAIIPTSTAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNII GAIIPTS AIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGNFSD---------- 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQG+FSD          
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDAFNFMIVFQA 180

Query: 181 -----------------------------------------------GYRFGQEEETYNI 194
                                                          GY+FGQEEETYNI
Sbjct: 181 EHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYKFGQEEETYNI 240
[Close]
BLAST of Spo16196.1 vs. UniProtKB/TrEMBL
Match: A0A0S2PJW4_9MARC (Photosystem II protein D1 OS=Corsinia coriandrina GN=psbA PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 1.500e-92
Identity = 177/240 (73.75%), Postives = 183/240 (76.25%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMISTLLTATSVFIIAFIATPPVDI 60
           MTA LERRES S+WGRFC+WIT+ ENRLYIGWFGVLMI TLLTATSVFIIAFIA PPVDI
Sbjct: 1   MTATLERRESASIWGRFCDWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIILGAIIPTSTAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNII GAIIPTS AIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGNFSD---------- 180
           LGVACYMGREWELS+RLGMRPWIAVAYSAPVA ATAVFLIYPIGQG+FSD          
Sbjct: 121 LGVACYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 -------------------------------------GYRFGQEEETYNIVAAHGYFGDL 194
                                                GY+FG EEETYNIVAAHGYFG L
Sbjct: 181 NFMIVFQXXXXXFSAMHGSLVTSSLIRETTENESANAGYKFGXEEETYNIVAAHGYFGRL 240
[Close]
BLAST of Spo16196.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6M0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_100830 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 4.800e-91
Identity = 166/171 (97.08%), Postives = 167/171 (97.66%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMISTLLTATSVFIIAFIATPPVDI 60
           MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMI TLLTATSVFIIAFIATPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMIFTLLTATSVFIIAFIATPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIILGAIIPTSTAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNII GAIIPTS AIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGNFSDG 172
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQG+FSDG
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDG 171
[Close]
BLAST of Spo16196.1 vs. UniProtKB/TrEMBL
Match: B9SHX2_RICCO (Photosystem Q(B) protein, putative OS=Ricinus communis GN=RCOM_0568500 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 1.800e-90
Identity = 177/244 (72.54%), Postives = 181/244 (74.18%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMISTLLTATSVFIIAFIATPPVDI 60
           MTAILERRES+SLWG F NWIT+ ENRLYIGWF VLMI TLLTATSVFIIAFIA PPVDI
Sbjct: 1   MTAILERRESKSLWGHFYNWITSTENRLYIGWFVVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIILGAIIPTSTAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREP+SGSLLYGNNII GAIIPTSTAIGLHFYPIWEA SVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPISGSLLYGNNIISGAIIPTSTAIGLHFYPIWEAGSVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGNFSD---------- 180
           LGVACYMGREWELSF LGMRPWIAVAYSA VA ATAVFLIYPIGQG+FSD          
Sbjct: 121 LGVACYMGREWELSFHLGMRPWIAVAYSALVAAATAVFLIYPIGQGSFSDGMPLXHNILM 180

Query: 181 -----------------------------------------GYRFGQEEETYNIVAAHGY 194
                                                    GYRFGQEEETYNIVAAHGY
Sbjct: 181 HPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGY 240
[Close]
BLAST of Spo16196.1 vs. ExPASy Swiss-Prot
Match: PSBA_NICDE (Photosystem II protein D1 OS=Nicotiana debneyi GN=psbA PE=3 SV=2)

HSP 1 Score: 337.4 bits (864), Expect = 1.100e-91
Identity = 164/175 (93.71%), Postives = 166/175 (94.86%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMISTLLTATSVFIIAFIATPPVDI 60
           MTAILERRESESLWGRFCNWIT+ ENRLYIGWFGVLMI TLLTATSVFIIAFIA PPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIILGAIIPTSTAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNII GAIIPTS AIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGNFSDGYRFG 176
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQG+FSDG   G
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLG 175
[Close]
BLAST of Spo16196.1 vs. ExPASy Swiss-Prot
Match: PSBA_BUXMI (Photosystem II protein D1 OS=Buxus microphylla GN=psbA PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.100e-91
Identity = 164/175 (93.71%), Postives = 166/175 (94.86%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMISTLLTATSVFIIAFIATPPVDI 60
           MTAILERRESESLWGRFCNWIT+ ENRLYIGWFGVLMI TLLTATSVFIIAFIA PPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIILGAIIPTSTAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNII GAIIPTS AIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGNFSDGYRFG 176
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQG+FSDG   G
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLG 175
[Close]
BLAST of Spo16196.1 vs. ExPASy Swiss-Prot
Match: PSBA_CAPBU (Photosystem II protein D1 OS=Capsella bursa-pastoris GN=psbA PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.100e-91
Identity = 164/175 (93.71%), Postives = 166/175 (94.86%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMISTLLTATSVFIIAFIATPPVDI 60
           MTAILERRESESLWGRFCNWIT+ ENRLYIGWFGVLMI TLLTATSVFIIAFIA PPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIILGAIIPTSTAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNII GAIIPTS AIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGNFSDGYRFG 176
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQG+FSDG   G
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLG 175
[Close]
BLAST of Spo16196.1 vs. ExPASy Swiss-Prot
Match: PSBA_SPIOL (Photosystem II protein D1 OS=Spinacia oleracea GN=psbA PE=1 SV=2)

HSP 1 Score: 337.4 bits (864), Expect = 1.100e-91
Identity = 164/175 (93.71%), Postives = 166/175 (94.86%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMISTLLTATSVFIIAFIATPPVDI 60
           MTAILERRESESLWGRFCNWIT+ ENRLYIGWFGVLMI TLLTATSVFIIAFIA PPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIILGAIIPTSTAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNII GAIIPTS AIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGNFSDGYRFG 176
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQG+FSDG   G
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLG 175
[Close]
BLAST of Spo16196.1 vs. ExPASy Swiss-Prot
Match: PSBA_OENEH (Photosystem II protein D1 OS=Oenothera elata subsp. hookeri GN=psbA PE=3 SV=2)

HSP 1 Score: 337.4 bits (864), Expect = 1.100e-91
Identity = 164/175 (93.71%), Postives = 166/175 (94.86%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMISTLLTATSVFIIAFIATPPVDI 60
           MTAILERRESESLWGRFCNWIT+ ENRLYIGWFGVLMI TLLTATSVFIIAFIA PPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIILGAIIPTSTAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNII GAIIPTS AIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGNFSDGYRFG 176
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQG+FSDG   G
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLG 175
[Close]
BLAST of Spo16196.1 vs. TAIR (Arabidopsis)
Match: ATCG00020.1 (photosystem II reaction center protein A)

HSP 1 Score: 337.4 bits (864), Expect = 5.900e-93
Identity = 164/175 (93.71%), Postives = 166/175 (94.86%), Query Frame = 1 

		  

Query: 1   MTAILERRESESLWGRFCNWITNIENRLYIGWFGVLMISTLLTATSVFIIAFIATPPVDI 60
           MTAILERRESESLWGRFCNWIT+ ENRLYIGWFGVLMI TLLTATSVFIIAFIA PPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIILGAIIPTSTAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNII GAIIPTS AIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGNFSDGYRFG 176
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVA ATAVFLIYPIGQG+FSDG   G
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLG 175
[Close]
BLAST of Spo16196.1 vs. TAIR (Arabidopsis)
Match: ATCG00270.1 (photosystem II reaction center protein D)

HSP 1 Score: 62.8 bits (151), Expect = 2.800e-10
Identity = 41/171 (23.98%), Postives = 80/171 (46.78%), Query Frame = 1 

		  

Query: 8   RESESLWGRFCNWITNIENRLYIGWFGVLMISTLLTATSVFIIAFIATPPVDIDGIREPV 67
           ++ + L+    +W+   +  +++GW G+L+      A   +             G+    
Sbjct: 10  KDEKDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 69

Query: 68  SGSLLYGNNIILGAIIPTSTAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 127
           + S L G N +  A+   + ++      +W   +  +   W   GG +  + LH    + 
Sbjct: 70  ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWAFVALHGAFALI 129

Query: 128 CYMGREWELSFRLGMRPWIAVAYSAPVAVATAVFLIYPIGQGNFSDGYRFG 176
            +M R++EL+  + +RP+ A+A+S P+AV  +VFLIYP+GQ  +     FG
Sbjct: 130 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFG 175
The following BLAST results are available for this feature:
BLAST of Spo16196.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|296086149|emb|CBI31590.3|1.1e-9379.7unnamed protein product [Vitis... [more]
gi|953825854|gb|ALP00972.1|2.5e-9374.7photosystem II protein D1 (chl... [more]
gi|38043824|gb|AAR08472.1|2.1e-9271.6photosystem II 32 kDa protein ... [more]
gi|953825834|gb|ALP00962.1|2.1e-9273.7photosystem II protein D1 (chl... [more]
gi|902205337|gb|KNA15151.1|6.8e-9197.0hypothetical protein SOVF_1008... [more]
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BLAST of Spo16196.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0S2PKF8_9MARC1.7e-9374.7Photosystem II protein D1 OS=E... [more]
Q6W3U5_9BRYO1.5e-9271.6Photosystem II protein D1 OS=O... [more]
A0A0S2PJW4_9MARC1.5e-9273.7Photosystem II protein D1 OS=C... [more]
A0A0K9R6M0_SPIOL4.8e-9197.0Uncharacterized protein OS=Spi... [more]
B9SHX2_RICCO1.8e-9072.5Photosystem Q(B) protein, puta... [more]
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BLAST of Spo16196.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBA_NICDE1.1e-9193.7Photosystem II protein D1 OS=N... [more]
PSBA_BUXMI1.1e-9193.7Photosystem II protein D1 OS=B... [more]
PSBA_CAPBU1.1e-9193.7Photosystem II protein D1 OS=C... [more]
PSBA_SPIOL1.1e-9193.7Photosystem II protein D1 OS=S... [more]
PSBA_OENEH1.1e-9193.7Photosystem II protein D1 OS=O... [more]
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BLAST of Spo16196.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
ATCG00020.15.9e-9393.7photosystem II reaction center... [more]
ATCG00270.12.8e-1023.9photosystem II reaction center... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000484Photosynthetic reaction centre, L/MGENE3D1.20.85.10coord: 13..175
score: 1.5
IPR000484Photosynthetic reaction centre, L/MPFAMPF00124Photo_RCcoord: 28..176
score: 1.6
IPR000484Photosynthetic reaction centre, L/MunknownSSF81483Bacterial photosystem II reaction centre, L and M subunitscoord: 12..194
score: 6.93
NoneNo IPR availablePANTHERPTHR33149FAMILY NOT NAMEDcoord: 2..175
score: 2.0E
NoneNo IPR availablePANTHERPTHR33149:SF6SUBFAMILY NOT NAMEDcoord: 2..175
score: 2.0E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006508 proteolysis
biological_process GO:0006499 N-terminal protein myristoylation
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0048767 root hair elongation
biological_process GO:0016579 protein deubiquitination
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0009635 response to herbicide
biological_process GO:0015979 photosynthesis
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0009769 photosynthesis, light harvesting in photosystem II
biological_process GO:0010207 photosystem II assembly
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0006354 DNA-templated transcription, elongation
cellular_component GO:0009523 photosystem II
cellular_component GO:0005829 cytosol
cellular_component GO:0044425 membrane part
cellular_component GO:0009579 thylakoid
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
cellular_component GO:0005739 mitochondrion
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0009522 photosystem I
cellular_component GO:0010287 plastoglobule
cellular_component GO:0030076 light-harvesting complex
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045157 electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004843 thiol-dependent ubiquitin-specific protease activity
molecular_function GO:0008236 serine-type peptidase activity
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0010242 oxygen evolving activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008242 omega peptidase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
RNA-Seq Expression