Spo16164 (gene)

Overview
NameSpo16164
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionGenomic DNA, chrom
Locationchr4 : 100873477 .. 100875052 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACTAAATTGTGCAGTTTGACACCAACACTTTGTTTCTCTACCACCACTTCCATCAACACCAGAACCACTTCATCATGTTTACCAAACACAAAATCAAAAACAACAATCAAAATCTACCCTTTTCAATTTCAACAAATAGGCAAAACTCCATTAATTCCTGCTGTTCGAGCTTCTTCTGGGCCCAATTCCTCTGAACCCGATTTTCAGGTAAATGCTCTTGATTTTTGTTAATTGTTTTCCAGAAATATGTGCAGTGGTAATTAAATTTAGGTACTAAATGAATGATGAGTGTATTGAGTCTTGATTTTGGTGTCATATGATATCTAACACACAATTTTAAGCAGATGAAGCTAATTGTTCAATTTTTTTTTTCTGGGATTTTTGGGAGCTGTGGCATTTTCTATCCCCTGCCAAAGAATTTAAGTGTTAGTTAGCTATTGGCATTCATATGACTATATGAGGAATGGAAGAAGAACAAATCTTAAATTCTTAATTATTGGCTTCTTGCATATGAGTTTGAACCTACTTACTCTACCATTCGTTTACGCATAAATGTCAAGATTATGCACATGAATTTGTAAGGTGTTACTAACACCGTGTTAGTTATTGTTATTTAGAACTGACAAATAATATGATCGATATTTTAAAGTGGCAAGTGTTTTTTTTCTTTTCCCCCTTTTGTTGTGAATGAGCAATATTATAATTTATAAAGGAGGGTAGTATGATTCAAATCTGACATATATCGTACAAAATTTTTTAACTATTAGCATTTGTGTCGTATAAGTTAATCAATAGAACCTTAAGCAATAGAACAAATTAGTTAAGCACTTAAACCAAATAGTTAAGCAATTGAACTAATTGGTTAAGCATTATAACTAATTAGTTGAGCAATGAAACCAATTAGTTAAGCAATATAACAAATTAGTTATGCAATCAAAGTGGTCTTTTCGGTAAGACTGCCTTACACAAAAGTTGTCGTTGTAATTCCAGGGAAATTAGTTCCCTTGTTAAATTCACGTGAATTTCTCTAAGTTGTTTGGTTGACAACATGAGAATTAGATATTCCCATGAAATTTGATTGACCAAGGAGAGACTAGTTAATTCACTTCACATGTTTTTGTAGGAATTCAAACTTCTCATTAATTCCAACTTCTTTTTTTTTTACTTTTTTTTGTCAATCAAACAACTAGCCAATTTATAAATTCCCATGAATTTTCACTCCAAACAACCCCTAAATAACCGTGCATTTTAATTTCTATGGTAGACTATATGTTGTTCCTTCCCCCTTTTACTGCTTGATTATAGGATTATCTTGCTTCTCAACACGATGTGTTTATCTATTGGGGTTGTTTATGGAGGAGTTAATAATATGTTGTTAACAATGCAGGAAGACTTGACCTACTTGTTGAAGATAACTGCTGGTTCTATTTTGGGTGCAGCCTTGATTAAGTACGGCAGTGCCATTATCCCCGATATCACCAGACCCAACATAACCCAGGCTCTGCTCATGATTTCATCTCCTGTAGTAATAGCTGTTTTGCTTTTATTCAACGGAAGTCGTAAAGAATGA

mRNA sequence

ATGGCAACTAAATTGTGCAGTTTGACACCAACACTTTGTTTCTCTACCACCACTTCCATCAACACCAGAACCACTTCATCATGTTTACCAAACACAAAATCAAAAACAACAATCAAAATCTACCCTTTTCAATTTCAACAAATAGGCAAAACTCCATTAATTCCTGCTGTTCGAGCTTCTTCTGGGCCCAATTCCTCTGAACCCGATTTTCAGGAAGACTTGACCTACTTGTTGAAGATAACTGCTGGTTCTATTTTGGGTGCAGCCTTGATTAAGTACGGCAGTGCCATTATCCCCGATATCACCAGACCCAACATAACCCAGGCTCTGCTCATGATTTCATCTCCTGTAGTAATAGCTGTTTTGCTTTTATTCAACGGAAGTCGTAAAGAATGA

Coding sequence (CDS)

ATGGCAACTAAATTGTGCAGTTTGACACCAACACTTTGTTTCTCTACCACCACTTCCATCAACACCAGAACCACTTCATCATGTTTACCAAACACAAAATCAAAAACAACAATCAAAATCTACCCTTTTCAATTTCAACAAATAGGCAAAACTCCATTAATTCCTGCTGTTCGAGCTTCTTCTGGGCCCAATTCCTCTGAACCCGATTTTCAGGAAGACTTGACCTACTTGTTGAAGATAACTGCTGGTTCTATTTTGGGTGCAGCCTTGATTAAGTACGGCAGTGCCATTATCCCCGATATCACCAGACCCAACATAACCCAGGCTCTGCTCATGATTTCATCTCCTGTAGTAATAGCTGTTTTGCTTTTATTCAACGGAAGTCGTAAAGAATGA

Protein sequence

MATKLCSLTPTLCFSTTTSINTRTTSSCLPNTKSKTTIKIYPFQFQQIGKTPLIPAVRASSGPNSSEPDFQEDLTYLLKITAGSILGAALIKYGSAIIPDITRPNITQALLMISSPVVIAVLLLFNGSRKE
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo16164.1Spo16164.1mRNA


Homology
[Close]
BLAST of Spo16164.1 vs. NCBI nr
Match: gi|902168836|gb|KNA07558.1| (hypothetical protein SOVF_170650 [Spinacia oleracea])

HSP 1 Score: 249.2 bits (635), Expect = 3.900e-63
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1 

		  

Query: 1   MATKLCSLTPTLCFSTTTSINTRTTSSCLPNTKSKTTIKIYPFQFQQIGKTPLIPAVRAS 60
           MATKLCSLTPTLCFSTTTSINTRTTSSCLPNTKSKTTIKIYPFQFQQIGKTPLIPAVRAS
Sbjct: 1   MATKLCSLTPTLCFSTTTSINTRTTSSCLPNTKSKTTIKIYPFQFQQIGKTPLIPAVRAS 60

Query: 61  SGPNSSEPDFQEDLTYLLKITAGSILGAALIKYGSAIIPDITRPNITQALLMISSPVVIA 120
           SGPNSSEPDFQEDLTYLLKITAGSILGAALIKYGSAIIPDITRPNITQALLMISSPVVIA
Sbjct: 61  SGPNSSEPDFQEDLTYLLKITAGSILGAALIKYGSAIIPDITRPNITQALLMISSPVVIA 120

Query: 121 VLLLFNGSRKE 132
           VLLLFNGSRKE
Sbjct: 121 VLLLFNGSRKE 131
[Close]
BLAST of Spo16164.1 vs. NCBI nr
Match: gi|731359094|ref|XP_010691101.1| (PREDICTED: uncharacterized protein LOC104904530 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 139.8 bits (351), Expect = 3.400e-30
Identity = 84/137 (61.31%), Postives = 100/137 (72.99%), Query Frame = 1 

		  

Query: 1   MATKLCSLTPTLCFSTTTSINTRTTSSCL-----PNTKSKTTIKIYPFQFQQIGKTPLIP 60
           MAT L +L  T  FS + S N    SS L     P T+ +  I+ +P+       TPL+P
Sbjct: 1   MATTLANLAST--FSLSFSSNPINASSSLFFVTYPTTRRR--IRSFPYDIGHFRGTPLLP 60

Query: 61  AVRASSGPNSSEPDF-QEDLTYLLKITAGSILGAALIKYGSAIIPDITRPNITQALLMIS 120
           A+RA+SGPNS EP   Q+DLTYLLK+ AGS+ GAALIKYGSAI+PDIT+PNITQALLMIS
Sbjct: 61  AIRAASGPNSPEPTSPQDDLTYLLKLVAGSVFGAALIKYGSAIVPDITKPNITQALLMIS 120

Query: 121 SPVVIAVLLLFNGSRKE 132
           +PVVIAVLLLFNGSRKE
Sbjct: 121 TPVVIAVLLLFNGSRKE 133
[Close]
BLAST of Spo16164.1 vs. NCBI nr
Match: gi|703122437|ref|XP_010102575.1| (hypothetical protein L484_003949 [Morus notabilis])

HSP 1 Score: 86.3 bits (212), Expect = 4.400e-14
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 1 

		  

Query: 71  QEDLTYLLKITAGSILGAALIKYGSAIIPDITRPNITQALLMISSPVVIAVLLLFNGSRK 130
           Q+DL YL K+  GS++GAA+IKYGS + P+ITRPNITQALLMI  PVV+AVLLL N S K
Sbjct: 82  QKDLDYLWKLVVGSVVGAAIIKYGSVVFPEITRPNITQALLMIVIPVVVAVLLLINQSSK 141

Query: 131 E 132
           E
Sbjct: 142 E 142
[Close]
BLAST of Spo16164.1 vs. NCBI nr
Match: gi|645245078|ref|XP_008228711.1| (PREDICTED: uncharacterized protein LOC103328098 [Prunus mume])

HSP 1 Score: 85.5 bits (210), Expect = 7.500e-14
Identity = 50/107 (46.73%), Postives = 69/107 (64.49%), Query Frame = 1 

		  

Query: 27  SCLPNTKSKTTIKIYPFQFQQIGKTPLIPAVRASSG--PNSSEPDFQEDLTYLLKITAGS 86
           +CL +T+ K ++ I     Q+ G          SSG    +S  + Q+DL YL K+ AGS
Sbjct: 45  NCLSSTRVKGSLPIRALDPQRRGGEE----EEESSGIANTTSTSNSQDDLEYLGKVVAGS 104

Query: 87  ILGAALIKYGSAIIPDITRPNITQALLMISSPVVIAVLLLFNGSRKE 132
           I+ AA+IKYGS + P+ITRPNI QAL+MI +PV++A+LLLF  SR E
Sbjct: 105 IVAAAVIKYGSIVFPEITRPNIVQALIMILTPVIVAILLLFKQSRAE 147
[Close]
BLAST of Spo16164.1 vs. NCBI nr
Match: gi|823171848|ref|XP_012484940.1| (PREDICTED: uncharacterized protein LOC105799107 [Gossypium raimondii])

HSP 1 Score: 85.1 bits (209), Expect = 9.800e-14
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 1 

		  

Query: 32  TKSKTTIKIYPFQFQQIGKTPLIPAVRASSGPNSSEPDFQEDLTYLLKITAGSILGAALI 91
           T  + +  I  F  Q   +TP      A+  P       QEDL+Y+LK+  GS++GAA+I
Sbjct: 47  TSFQRSFPIRAFDSQTDEETPAFDEPNAAFIP-------QEDLSYVLKLGGGSMVGAAII 106

Query: 92  KYGSAIIPDITRPNITQALLMISSPVVIAVLLLFNGSR 130
           KYGS + P+ITRPNI QAL+MIS+PVVIAVLLL   SR
Sbjct: 107 KYGSILFPEITRPNIVQALIMISAPVVIAVLLLIKQSR 137
[Close]
BLAST of Spo16164.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QLI1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_170650 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 2.700e-63
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1 

		  

Query: 1   MATKLCSLTPTLCFSTTTSINTRTTSSCLPNTKSKTTIKIYPFQFQQIGKTPLIPAVRAS 60
           MATKLCSLTPTLCFSTTTSINTRTTSSCLPNTKSKTTIKIYPFQFQQIGKTPLIPAVRAS
Sbjct: 1   MATKLCSLTPTLCFSTTTSINTRTTSSCLPNTKSKTTIKIYPFQFQQIGKTPLIPAVRAS 60

Query: 61  SGPNSSEPDFQEDLTYLLKITAGSILGAALIKYGSAIIPDITRPNITQALLMISSPVVIA 120
           SGPNSSEPDFQEDLTYLLKITAGSILGAALIKYGSAIIPDITRPNITQALLMISSPVVIA
Sbjct: 61  SGPNSSEPDFQEDLTYLLKITAGSILGAALIKYGSAIIPDITRPNITQALLMISSPVVIA 120

Query: 121 VLLLFNGSRKE 132
           VLLLFNGSRKE
Sbjct: 121 VLLLFNGSRKE 131
[Close]
BLAST of Spo16164.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BKP4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g219270 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.300e-30
Identity = 84/137 (61.31%), Postives = 100/137 (72.99%), Query Frame = 1 

		  

Query: 1   MATKLCSLTPTLCFSTTTSINTRTTSSCL-----PNTKSKTTIKIYPFQFQQIGKTPLIP 60
           MAT L +L  T  FS + S N    SS L     P T+ +  I+ +P+       TPL+P
Sbjct: 1   MATTLANLAST--FSLSFSSNPINASSSLFFVTYPTTRRR--IRSFPYDIGHFRGTPLLP 60

Query: 61  AVRASSGPNSSEPDF-QEDLTYLLKITAGSILGAALIKYGSAIIPDITRPNITQALLMIS 120
           A+RA+SGPNS EP   Q+DLTYLLK+ AGS+ GAALIKYGSAI+PDIT+PNITQALLMIS
Sbjct: 61  AIRAASGPNSPEPTSPQDDLTYLLKLVAGSVFGAALIKYGSAIVPDITKPNITQALLMIS 120

Query: 121 SPVVIAVLLLFNGSRKE 132
           +PVVIAVLLLFNGSRKE
Sbjct: 121 TPVVIAVLLLFNGSRKE 133
[Close]
BLAST of Spo16164.1 vs. UniProtKB/TrEMBL
Match: W9RU97_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003949 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.100e-14
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 1 

		  

Query: 71  QEDLTYLLKITAGSILGAALIKYGSAIIPDITRPNITQALLMISSPVVIAVLLLFNGSRK 130
           Q+DL YL K+  GS++GAA+IKYGS + P+ITRPNITQALLMI  PVV+AVLLL N S K
Sbjct: 82  QKDLDYLWKLVVGSVVGAAIIKYGSVVFPEITRPNITQALLMIVIPVVVAVLLLINQSSK 141

Query: 131 E 132
           E
Sbjct: 142 E 142
[Close]
BLAST of Spo16164.1 vs. UniProtKB/TrEMBL
Match: A0A0D2NPM9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G101400 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.900e-14
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 1 

		  

Query: 32  TKSKTTIKIYPFQFQQIGKTPLIPAVRASSGPNSSEPDFQEDLTYLLKITAGSILGAALI 91
           T  + +  I  F  Q   +TP      A+  P       QEDL+Y+LK+  GS++GAA+I
Sbjct: 47  TSFQRSFPIRAFDSQTDEETPAFDEPNAAFIP-------QEDLSYVLKLGGGSMVGAAII 106

Query: 92  KYGSAIIPDITRPNITQALLMISSPVVIAVLLLFNGSR 130
           KYGS + P+ITRPNI QAL+MIS+PVVIAVLLL   SR
Sbjct: 107 KYGSILFPEITRPNIVQALIMISAPVVIAVLLLIKQSR 137
[Close]
BLAST of Spo16164.1 vs. UniProtKB/TrEMBL
Match: A0A061GFR5_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_027260 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.900e-14
Identity = 59/142 (41.55%), Postives = 77/142 (54.23%), Query Frame = 1 

		  

Query: 2   ATKLCSLTPTLCFSTTTSINTRTTSSCLPNTKSKTTIKIY--------PFQFQQIGKTPL 61
           A+ + S +P LC+ST +           P TK K T K             FQ+      
Sbjct: 3   ASAVASGSPKLCYSTPSHC------PLYPATKLKGTAKFLVDAKFCSSTTSFQRSFPIRA 62

Query: 62  IPAVRASSGPNSSEPDF----QEDLTYLLKITAGSILGAALIKYGSAIIPDITRPNITQA 121
           + +      P+  EP+     QED  YL K+ AGS +GAA+IKYGS + P+ITRPNI QA
Sbjct: 63  VDSQAEEENPSLDEPNAGFIPQEDFNYLWKLGAGSAIGAAIIKYGSILFPEITRPNILQA 122

Query: 122 LLMISSPVVIAVLLLFNGSRKE 132
           L+MIS+PV+IAVLLL   SR E
Sbjct: 123 LIMISAPVIIAVLLLIKQSRLE 138
[Close]
BLAST of Spo16164.1 vs. TAIR (Arabidopsis)
Match: AT3G15900.1 (unknown protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.000e-13
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 

		  

Query: 71  QEDLTYLLKITAGSILGAALIKYGSAIIPDITRPNITQALLMISSPVVIAVLLL 125
           QEDL YLLKI  GS+ GAA+IKYGS + P ITRPN+T AL +I +PVVI+V+LL
Sbjct: 76  QEDLNYLLKIGVGSVAGAAIIKYGSVLFPQITRPNLTLALFIIIAPVVISVILL 129
The following BLAST results are available for this feature:
BLAST of Spo16164.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902168836|gb|KNA07558.1|3.9e-63100.hypothetical protein SOVF_1706... [more]
gi|731359094|ref|XP_010691101.1|3.4e-3061.3PREDICTED: uncharacterized pro... [more]
gi|703122437|ref|XP_010102575.1|4.4e-1468.8hypothetical protein L484_0039... [more]
gi|645245078|ref|XP_008228711.1|7.5e-1446.7PREDICTED: uncharacterized pro... [more]
gi|823171848|ref|XP_012484940.1|9.8e-1450.0PREDICTED: uncharacterized pro... [more]
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BLAST of Spo16164.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QLI1_SPIOL2.7e-63100.Uncharacterized protein OS=Spi... [more]
A0A0J8BKP4_BETVU2.3e-3061.3Uncharacterized protein OS=Bet... [more]
W9RU97_9ROSA3.1e-1468.8Uncharacterized protein OS=Mor... [more]
A0A0D2NPM9_GOSRA6.9e-1450.0Uncharacterized protein OS=Gos... [more]
A0A061GFR5_THECC6.9e-1441.5Uncharacterized protein isofor... [more]
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BLAST of Spo16164.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo16164.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G15900.11.0e-1366.6unknown protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37224FAMILY NOT NAMEDcoord: 40..129
score: 1.6
NoneNo IPR availablePANTHERPTHR37224:SF1SUBFAMILY NOT NAMEDcoord: 40..129
score: 1.6

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000160 phosphorelay signal transduction system
biological_process GO:0009718 anthocyanin-containing compound biosynthetic process
biological_process GO:0061077 chaperone-mediated protein folding
biological_process GO:0009649 entrainment of circadian clock
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0042753 positive regulation of circadian rhythm
biological_process GO:0009585 red, far-red light phototransduction
biological_process GO:0009909 regulation of flower development
biological_process GO:0010114 response to red light
cellular_component GO:0009507 chloroplast
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
molecular_function GO:0044183 protein binding involved in protein folding
molecular_function GO:0042803 protein homodimerization activity
RNA-Seq Expression