Spo15902 (gene) | SpinachBase

Overview


Name	Spo15902
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	NADH dehydrogenase (ubiquinone)s
Location	SpoScf_01025 : 110215 .. 110424 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGCCTTTGGGATCAACTGGGGAGTTCTTCAGGAGGCGCGATGAGTGGAGGAAGCACCCGACTCTCAGCAATCAGCTCCGCTTCCGCCACGCCGTTCCTGGCCTTGGGCTCGGTGTCGCCGCCTTCTGCGTTTACCTCGTCGGCGAAACCGTCTACAATCAGTTTTACTCCCCCCCTCATTCTTCCTCTTCTTCTCACCATTGA

mRNA sequence

ATGGCGAAGCCTTTGGGATCAACTGGGGAGTTCTTCAGGAGGCGCGATGAGTGGAGGAAGCACCCGACTCTCAGCAATCAGCTCCGCTTCCGCCACGCCGTTCCTGGCCTTGGGCTCGGTGTCGCCGCCTTCTGCGTTTACCTCGTCGGCGAAACCGTCTACAATCAGTTTTACTCCCCCCCTCATTCTTCCTCTTCTTCTCACCATTGA

Coding sequence (CDS)

ATGGCGAAGCCTTTGGGATCAACTGGGGAGTTCTTCAGGAGGCGCGATGAGTGGAGGAAGCACCCGACTCTCAGCAATCAGCTCCGCTTCCGCCACGCCGTTCCTGGCCTTGGGCTCGGTGTCGCCGCCTTCTGCGTTTACCTCGTCGGCGAAACCGTCTACAATCAGTTTTACTCCCCCCCTCATTCTTCCTCTTCTTCTCACCATTGA

Protein sequence

MAKPLGSTGEFFRRRDEWRKHPTLSNQLRFRHAVPGLGLGVAAFCVYLVGETVYNQFYSPPHSSSSSHH

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo15902.1	Spo15902.1	mRNA

Homology

[Close]

BLAST of Spo15902.1 vs. NCBI nr
Match: gi|902228204|gb|KNA21018.1| (hypothetical protein SOVF_047060 [Spinacia oleracea])

HSP 1 Score: 149.8 bits (377), Expect = 1.700e-33
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


		  
Query: 1  MAKPLGSTGEFFRRRDEWRKHPTLSNQLRFRHAVPGLGLGVAAFCVYLVGETVYNQFYSP 60
          MAKPLGSTGEFFRRRDEWRKHPTLSNQLRFRHAVPGLGLGVAAFCVYLVGETVYNQFYSP
Sbjct: 1  MAKPLGSTGEFFRRRDEWRKHPTLSNQLRFRHAVPGLGLGVAAFCVYLVGETVYNQFYSP 60

Query: 61 PHSSSSSHH 70
          PHSSSSSHH
Sbjct: 61 PHSSSSSHH 69

[Close]

BLAST of Spo15902.1 vs. NCBI nr
Match: gi|731341837|ref|XP_010682096.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 130.2 bits (326), Expect = 1.400e-27
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 1


		  
Query: 1  MAKPLGSTGEFFRRRDEWRKHPTLSNQLRFRHAVPGLGLGVAAFCVYLVGETVYNQFYSP 60
          MAKPLGSTGEFFRRRDEWRKHPTLSNQ  FRH+VPGLGLGVAAFCVYLVGET+YN+FYS 
Sbjct: 1  MAKPLGSTGEFFRRRDEWRKHPTLSNQ--FRHSVPGLGLGVAAFCVYLVGETIYNKFYSS 60

Query: 61 PHSSSSSH 69
          PHSSSS H
Sbjct: 61 PHSSSSHH 66

[Close]

BLAST of Spo15902.1 vs. NCBI nr
Match: gi|870856290|gb|KMT07953.1| (hypothetical protein BVRB_6g144870 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 124.8 bits (312), Expect = 5.900e-26
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 1


		  
Query: 1  MAKPLGSTGEFFRRRDEWRKHPTLSNQLRFRHAVPGLGLGVAAFCVYLVGETVYNQFYSP 60
          MAKPLGSTGEFF+RRDEWRKHPT SNQ  FRH+VPGLGLGVAAFCVYLVG+T+YN+FYS 
Sbjct: 1  MAKPLGSTGEFFKRRDEWRKHPTHSNQ--FRHSVPGLGLGVAAFCVYLVGKTIYNKFYSS 60

Query: 61 PHSSSSSH 69
          PHSSSS H
Sbjct: 61 PHSSSSHH 66

[Close]

BLAST of Spo15902.1 vs. NCBI nr
Match: gi|1009179381|ref|XP_015871049.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 109.0 bits (271), Expect = 3.400e-21
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 1


		  
Query: 1  MAKPLGSTGEFFRRRDEWRKHPTLSNQLRFRHAVPGLGLGVAAFCVYLVGETVYNQFYSP 60
          MAKPLG+TGEFFRRRDEWRKHP LSNQL  RHA+PG GLGVAAF +YLVGE VYN+  +P
Sbjct: 1  MAKPLGATGEFFRRRDEWRKHPRLSNQL--RHALPGFGLGVAAFGIYLVGEQVYNKLLAP 60

Query: 61 PHSSSSSHH 70
            SSSSS H
Sbjct: 61 SSSSSSSSH 67

[Close]

BLAST of Spo15902.1 vs. NCBI nr
Match: gi|18394120|ref|NP_563952.1| (NADH dehydrogenase (ubiquinone) [Arabidopsis thaliana])

HSP 1 Score: 108.6 bits (270), Expect = 4.400e-21
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 1


		  
Query: 1  MAKPLGSTGEFFRRRDEWRKHPTLSNQLRFRHAVPGLGLGVAAFCVYLVGETVYNQFYSP 60
          MAKPLG+TGEFFRRRDEWRKHP LSNQ+  RHA+PGLG+GVAAFCVYLVGE +YN+  +P
Sbjct: 1  MAKPLGTTGEFFRRRDEWRKHPMLSNQM--RHALPGLGIGVAAFCVYLVGEQIYNKALAP 60

Query: 61 PHSSSSSHH 70
             S SSHH
Sbjct: 61 ---SKSSHH 64

[Close]

BLAST of Spo15902.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNG7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_047060 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.200e-33
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


		  
Query: 1  MAKPLGSTGEFFRRRDEWRKHPTLSNQLRFRHAVPGLGLGVAAFCVYLVGETVYNQFYSP 60
          MAKPLGSTGEFFRRRDEWRKHPTLSNQLRFRHAVPGLGLGVAAFCVYLVGETVYNQFYSP
Sbjct: 1  MAKPLGSTGEFFRRRDEWRKHPTLSNQLRFRHAVPGLGLGVAAFCVYLVGETVYNQFYSP 60

Query: 61 PHSSSSSHH 70
          PHSSSSSHH
Sbjct: 61 PHSSSSSHH 69

[Close]

BLAST of Spo15902.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C275_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g145620 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 9.800e-28
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 1


		  
Query: 1  MAKPLGSTGEFFRRRDEWRKHPTLSNQLRFRHAVPGLGLGVAAFCVYLVGETVYNQFYSP 60
          MAKPLGSTGEFFRRRDEWRKHPTLSNQ  FRH+VPGLGLGVAAFCVYLVGET+YN+FYS 
Sbjct: 1  MAKPLGSTGEFFRRRDEWRKHPTLSNQ--FRHSVPGLGLGVAAFCVYLVGETIYNKFYSS 60

Query: 61 PHSSSSSH 69
          PHSSSS H
Sbjct: 61 PHSSSSHH 66

[Close]

BLAST of Spo15902.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C7F5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g144870 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.100e-26
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 1


		  
Query: 1  MAKPLGSTGEFFRRRDEWRKHPTLSNQLRFRHAVPGLGLGVAAFCVYLVGETVYNQFYSP 60
          MAKPLGSTGEFF+RRDEWRKHPT SNQ  FRH+VPGLGLGVAAFCVYLVG+T+YN+FYS 
Sbjct: 1  MAKPLGSTGEFFKRRDEWRKHPTHSNQ--FRHSVPGLGLGVAAFCVYLVGKTIYNKFYSS 60

Query: 61 PHSSSSSH 69
          PHSSSS H
Sbjct: 61 PHSSSSHH 66

[Close]

BLAST of Spo15902.1 vs. UniProtKB/TrEMBL
Match: A0A078I7X8_BRANA (BnaA06g09280D protein OS=Brassica napus GN=BnaA06g09280D PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.100e-21
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 1


		  
Query: 1  MAKPLGSTGEFFRRRDEWRKHPTLSNQLRFRHAVPGLGLGVAAFCVYLVGETVYNQFYSP 60
          MAKPLG+TGEFFRRRDEWRKHP LSNQ+  RHA+PGLG+GVAAFCVYLVGE +Y++  +P
Sbjct: 1  MAKPLGTTGEFFRRRDEWRKHPMLSNQM--RHALPGLGIGVAAFCVYLVGEQIYSKALAP 60

Query: 61 PHSSSSSHH 70
            S SSSHH
Sbjct: 61 --SKSSSHH 65

[Close]

BLAST of Spo15902.1 vs. UniProtKB/TrEMBL
Match: D7KBK4_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_471620 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.100e-21
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 1


		  
Query: 1  MAKPLGSTGEFFRRRDEWRKHPTLSNQLRFRHAVPGLGLGVAAFCVYLVGETVYNQFYSP 60
          MAKPLG+TGEFFRRRDEWRKHP LSNQ+  RHA+PGLG+GVAAFCVYLVGE +YN+  +P
Sbjct: 1  MAKPLGTTGEFFRRRDEWRKHPMLSNQM--RHALPGLGIGVAAFCVYLVGEQIYNKALAP 60

Query: 61 PHSSSSSHH 70
             S SSHH
Sbjct: 61 ---SKSSHH 64

[Close]

BLAST of Spo15902.1 vs. ExPASy Swiss-Prot
Match: NDB3B_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B OS=Arabidopsis thaliana GN=At1g14450 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.700e-23
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 1


		  
Query: 1  MAKPLGSTGEFFRRRDEWRKHPTLSNQLRFRHAVPGLGLGVAAFCVYLVGETVYNQFYSP 60
          MAKPLG+TGEFFRRRDEWRKHP LSNQ+  RHA+PGLG+GVAAFCVYLVGE +YN+  +P
Sbjct: 1  MAKPLGTTGEFFRRRDEWRKHPMLSNQM--RHALPGLGIGVAAFCVYLVGEQIYNKALAP 60

Query: 61 PHSSSSSHH 70
             S SSHH
Sbjct: 61 ---SKSSHH 64

[Close]

BLAST of Spo15902.1 vs. ExPASy Swiss-Prot
Match: NDB3A_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-A OS=Arabidopsis thaliana GN=At2g02510 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 5.200e-22
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 1


		  
Query: 1  MAKPLGSTGEFFRRRDEWRKHPTLSNQLRFRHAVPGLGLGVAAFCVYLVGETVYNQFYSP 60
          MAKPLG+TGEFFRRRDEWRKHP LSNQ+  RHA+PG+G+GV AFCVYLVGE +Y++  +P
Sbjct: 1  MAKPLGTTGEFFRRRDEWRKHPMLSNQM--RHALPGIGIGVGAFCVYLVGEQIYSKLMAP 60

Query: 61 PHSSSSSH 69
            SS SSH
Sbjct: 61 --SSQSSH 64

[Close]

BLAST of Spo15902.1 vs. TAIR (Arabidopsis)
Match: AT1G14450.1 (NADH dehydrogenase (ubiquinone)s)

HSP 1 Score: 108.6 bits (270), Expect = 1.500e-24
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 1


		  
Query: 1  MAKPLGSTGEFFRRRDEWRKHPTLSNQLRFRHAVPGLGLGVAAFCVYLVGETVYNQFYSP 60
          MAKPLG+TGEFFRRRDEWRKHP LSNQ+  RHA+PGLG+GVAAFCVYLVGE +YN+  +P
Sbjct: 1  MAKPLGTTGEFFRRRDEWRKHPMLSNQM--RHALPGLGIGVAAFCVYLVGEQIYNKALAP 60

Query: 61 PHSSSSSHH 70
             S SSHH
Sbjct: 61 ---SKSSHH 64

[Close]

BLAST of Spo15902.1 vs. TAIR (Arabidopsis)
Match: AT2G02510.1 (NADH dehydrogenase (ubiquinone)s)

HSP 1 Score: 104.4 bits (259), Expect = 2.900e-23
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 1


		  
Query: 1  MAKPLGSTGEFFRRRDEWRKHPTLSNQLRFRHAVPGLGLGVAAFCVYLVGETVYNQFYSP 60
          MAKPLG+TGEFFRRRDEWRKHP LSNQ+  RHA+PG+G+GV AFCVYLVGE +Y++  +P
Sbjct: 1  MAKPLGTTGEFFRRRDEWRKHPMLSNQM--RHALPGIGIGVGAFCVYLVGEQIYSKLMAP 60

Query: 61 PHSSSSSH 69
            SS SSH
Sbjct: 61 --SSQSSH 64

The following BLAST results are available for this feature:

BLAST of Spo15902.1 vs. NCBI nr
BLAST of Spo15902.1 vs. UniProtKB/TrEMBL
BLAST of Spo15902.1 vs. ExPASy Swiss-Prot
BLAST of Spo15902.1 vs. TAIR (Arabidopsis)

BLAST of Spo15902.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902228204\|gb\|KNA21018.1\|	1.7e-33	100.	hypothetical protein SOVF_0470...	[more]
gi\|731341837\|ref\|XP_010682096.1\|	1.4e-27	89.7	PREDICTED: NADH dehydrogenase ...	[more]
gi\|870856290\|gb\|KMT07953.1\|	5.9e-26	85.2	hypothetical protein BVRB_6g14...	[more]
gi\|1009179381\|ref\|XP_015871049.1\|	3.4e-21	76.8	PREDICTED: NADH dehydrogenase ...	[more]
gi\|18394120\|ref\|NP_563952.1\|	4.4e-21	75.3	NADH dehydrogenase (ubiquinone...	[more]

BLAST of Spo15902.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RNG7_SPIOL	1.2e-33	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C275_BETVU	9.8e-28	89.7	Uncharacterized protein OS=Bet...	[more]
A0A0J8C7F5_BETVU	4.1e-26	85.2	Uncharacterized protein OS=Bet...	[more]
A0A078I7X8_BRANA	3.1e-21	75.3	BnaA06g09280D protein OS=Brass...	[more]
D7KBK4_ARALL	3.1e-21	75.3	Putative uncharacterized prote...	[more]

BLAST of Spo15902.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2


Match Name	E-value	Identity	Description
NDB3B_ARATH	2.7e-23	75.3	NADH dehydrogenase [ubiquinone...	[more]
NDB3A_ARATH	5.2e-22	72.0	NADH dehydrogenase [ubiquinone...	[more]

BLAST of Spo15902.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT1G14450.1	1.5e-24	75.3	NADH dehydrogenase (ubiquinone...	[more]
AT2G02510.1	2.9e-23	72.0	NADH dehydrogenase (ubiquinone...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012576	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3	PANTHER	PTHR15082	NADH-UBIQUINONE OXIDOREDUCTASE B12 SUBUNIT	coord: 8..68 score: 2.8
IPR012576	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3	PFAM	PF08122	NDUF_B12	coord: 14..55 score: 2.

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0050821	protein stabilization
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0016558	protein import into peroxisome matrix
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0016573	histone acetylation
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0009853	photorespiration
biological_process	GO:0071806	protein transmembrane transport
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0042550	photosystem I stabilization
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0009780	photosynthetic NADP+ reduction
biological_process	GO:0030003	cellular cation homeostasis
biological_process	GO:0022900	electron transport chain
biological_process	GO:0070838	divalent metal ion transport
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0005742	mitochondrial outer membrane translocase complex
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0030093	chloroplast photosystem I
cellular_component	GO:0009573	chloroplast ribulose bisphosphate carboxylase complex
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005778	peroxisomal membrane
cellular_component	GO:0000123	histone acetyltransferase complex
cellular_component	GO:0080008	Cul4-RING E3 ubiquitin ligase complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0015450	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004402	histone acetyltransferase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo26994	0.80	Barchart \| Table
Spo05949	0.79	Barchart \| Table
Spo16694	0.77	Barchart \| Table
Spo01546	0.74	Barchart \| Table
Spo25340	0.72	Barchart \| Table
Spo02159	0.72	Barchart \| Table
Spo16692	0.71	Barchart \| Table
Spo20047	0.71	Barchart \| Table
Spo18201	0.71	Barchart \| Table
Spo25714	0.71	Barchart \| Table
Spo14404	0.70	Barchart \| Table
Spo01398	0.70	Barchart \| Table
Spo08157	0.70	Barchart \| Table
Spo18874	0.70	Barchart \| Table
Spo25206	0.70	Barchart \| Table
Spo02389	0.69	Barchart \| Table
Spo08258	0.69	Barchart \| Table
Spo17591	0.69	Barchart \| Table
Spo01066	0.69	Barchart \| Table
Spo00580	0.69	Barchart \| Table
Spo21317	0.68	Barchart \| Table
Spo05935	0.68	Barchart \| Table
Spo10401	0.68	Barchart \| Table
Spo11679	0.68	Barchart \| Table
Spo21430	0.67	Barchart \| Table
Spo17068	0.67	Barchart \| Table
Spo03847	0.67	Barchart \| Table
Spo21366	0.67	Barchart \| Table
Spo19349	0.66	Barchart \| Table
Spo12438	0.66	Barchart \| Table
Spo01035	0.66	Barchart \| Table
Spo01491	0.65	Barchart \| Table