Spo15890 (gene)

Overview
NameSpo15890
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_03832 : 10447 .. 11904 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACATGTGAATGATTTTATTGGTTGATGTCACGTGTGACAAGAAATCAAGAACAAAATACTACAGTACATAAAACAAGATCATATATAGCTTAATAGCTCAACCAACAAACATAAACCAATCACCAAAACTCAAAGAAGAGATAGAGAAAGAGAAAGAGAAAGAGAGTAAAAATGTACTCAGATCAACCACCTCTAGTTCAAGAAATAACATACTATGATCATGTTAAGAGACGCCACCACGAGAAAGGATGCATCTATGCAGCGTTCGTTTTCTTTAAACTCTAAAACTTGTTGTTAATACTTAATAGTGTGACTTATACTAAGATTATTGATTTTAACAAGTAGTACTAAATCTGGTTTAAGTAAGCCTGTTTTTTCTGGTATGTTGAATGCAGTTGTTTCGCGTTATGCTGCTGCTTTTGCTGCTATGAAACCTGTGAATGCTGCTTCGATATCCTCTGCTGTTGCTGTTAAGCAGAAGCATTCATTTCAGAAACAAACCGTGTCTGTACTACTGTATAGTACTACTTTGAGAATGGAATTTGTAATGGATTAAGATGGGTTTGTATCTTTGATTTTGTAAAGTTCTGTCTTGTTTCAATAAGAACATCATGTTTGTAATTTGTAAAGTGCTGTCTTATTAACTTCATCTATGTAATTGTTTGGTGTTCCAAAATATTCAACAACTATTGCTACATACTTGTATCAACTACTTGTATTTCTAACAGACAACTTCAATCTTCAGAGTTCAGACTAAACAGAGAAATGTACATGTGAACTCATTTCAAAACGCCAAAAAAGAGAAGAGATTAAACTAGAATGTCAGGATTTCTTCCTTTGGGGTGTGTAGTCAGATCAGCTCAGCATTTAGAAGAGTAAATCTTAAGACTGTAATATCTTCAACATTTAGAATCAAAGGAGTCTCAGAATATGTACACACAGGCAACAGAAGTCAGCAGGGTGGTGAGCAGTATCGAGACAAAATTGACACCATTGTTGTCGAGGATATCAACACCACAGATACGCTTAACAGTGCGTCCAGGTTTCCCAACAACCTTCAATTGGCAATTTAAAACTGATAAGTAAATATTAACAGTATCATCAATTCATCATGCAAGTTGGCAAATGCAGAAAGAGAAACTCTGAAATTGCGGCAAGAGTGACAACATAAGAAAGATTTTAGTTACTCTGTATCATACAAAGACATGTTCAAAATCTTTCCTAGTTTCATGTAATATTACAAACTGAAGCAGATGTGTAAAATCTTTCACAAAAAGCCTTTAGCGATGGTTCCCAGGCATGGAATTAAAATAGAGAAAAAAATAGCATAAAGAGCACAAATTCCAAGACTTTATATAATCAGGTTTATGCGAGCATACACATAAGCATCACAATTTGAAGTCAGCAATATATCAGAATGCAGAACCTATGGAGCAAGGAAGAAGGTTTGCAGGCCAC

mRNA sequence

ACATGTGAATGATTTTATTGGTTGATGTCACGTGTGACAAGAAATCAAGAACAAAATACTACAGTACATAAAACAAGATCATATATAGCTTAATAGCTCAACCAACAAACATAAACCAATCACCAAAACTCAAAGAAGAGATAGAGAAAGAGAAAGAGAAAGAGAGTAAAAATGTACTCAGATCAACCACCTCTAGTTCAAGAAATAACATACTATGATCATGTTAAGAGACGCCACCACGAGAAAGGATGCATCTATGCAGCTTGTTTCGCGTTATGCTGCTGCTTTTGCTGCTATGAAACCTGTGAATGCTGCTTCGATATCCTCTGCTGTTGCTGTTAAGCAGAAGCATTCATTTCAGAAACAAACCGTGTCTGTACTACTGTATAGTACTACTTTGAGAATGGAATTTGTAATGGATTAAGATGGGTTTGTATCTTTGATTTTGTAAAGTTCTGTCTTGTTTCAATAAGAACATCATGTTTGTAATTTGTAAAGTGCTGTCTTATTAACTTCATCTATGTAATTGTTTGGTGTTCCAAAATATTCAACAACTATTGCTACATACTTGTATCAACTACTTGTATTTCTAACAGACAACTTCAATCTTCAGAGTTCAGACTAAACAGAGAAATGTACATGTGAACTCATTTCAAAACGCCAAAAAAGAGAAGAGATTAAACTAGAATGTCAGGATTTCTTCCTTTGGGGTGTGTAGTCAGATCAGCTCAGCATTTAGAAGAGTAAATCTTAAGACTGTAATATCTTCAACATTTAGAATCAAAGGAGTCTCAGAATATGTACACACAGGCAACAGAAGTCAGCAGGGTGGTGAGCAGTATCGAGACAAAATTGACACCATTGTTGTCGAGGATATCAACACCACAGATACGCTTAACAGTGCGTCCAGGTTTCCCAACAACCTTCAATTGGCAATTTAAAACTGATAAGTAAATATTAACAGTATCATCAATTCATCATGCAAGTTGGCAAATGCAGAAAGAGAAACTCTGAAATTGCGGCAAGAGTGACAACATAAGAAAGATTTTAGTTACTCTGTATCATACAAAGACATGTTCAAAATCTTTCCTAGTTTCATGTAATATTACAAACTGAAGCAGATGTGTAAAATCTTTCACAAAAAGCCTTTAGCGATGGTTCCCAGGCATGGAATTAAAATAGAGAAAAAAATAGCATAAAGAGCACAAATTCCAAGACTTTATATAATCAGGTTTATGCGAGCATACACATAAGCATCACAATTTGAAGTCAGCAATATATCAGAATGCAGAACCTATGGAGCAAGGAAGAAGGTTTGCAGGCCAC

Coding sequence (CDS)

ATGATCATGTTAAGAGACGCCACCACGAGAAAGGATGCATCTATGCAGCTTGTTTCGCGTTATGCTGCTGCTTTTGCTGCTATGAAACCTGTGAATGCTGCTTCGATATCCTCTGCTGTTGCTGTTAAGCAGAAGCATTCATTTCAGAAACAAACCGTGTCTGTACTACTGTATAGTACTACTTTGAGAATGGAATTTGTAATGGATTAA

Protein sequence

MIMLRDATTRKDASMQLVSRYAAAFAAMKPVNAASISSAVAVKQKHSFQKQTVSVLLYSTTLRMEFVMD
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo15890.1Spo15890.1mRNA


Homology
[Close]
BLAST of Spo15890.1 vs. NCBI nr
Match: gi|902185886|gb|KNA10572.1| (hypothetical protein SOVF_143140 [Spinacia oleracea])

HSP 1 Score: 120.9 bits (302), Expect = 8.500e-25
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

		  

Query: 3  MLRDATTRKDASMQLVSRYAAAFAAMKPVNAASISSAVAVKQKHSFQKQTVSVLLYSTTL 62
          MLRDATTRKDASMQLVSRYAAAFAAMKPVNAASISSAVAVKQKHSFQKQTVSVLLYSTTL
Sbjct: 1  MLRDATTRKDASMQLVSRYAAAFAAMKPVNAASISSAVAVKQKHSFQKQTVSVLLYSTTL 60

Query: 63 RMEFVMD 70
          RMEFVMD
Sbjct: 61 RMEFVMD 67
[Close]
BLAST of Spo15890.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QTF9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_143140 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 5.900e-25
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

		  

Query: 3  MLRDATTRKDASMQLVSRYAAAFAAMKPVNAASISSAVAVKQKHSFQKQTVSVLLYSTTL 62
          MLRDATTRKDASMQLVSRYAAAFAAMKPVNAASISSAVAVKQKHSFQKQTVSVLLYSTTL
Sbjct: 1  MLRDATTRKDASMQLVSRYAAAFAAMKPVNAASISSAVAVKQKHSFQKQTVSVLLYSTTL 60

Query: 63 RMEFVMD 70
          RMEFVMD
Sbjct: 61 RMEFVMD 67
The following BLAST results are available for this feature:
BLAST of Spo15890.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902185886|gb|KNA10572.1|8.5e-25100.hypothetical protein SOVF_1431... [more]
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BLAST of Spo15890.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QTF9_SPIOL5.9e-25100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo15890.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15890.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030001 metal ion transport
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0035265 organ growth
biological_process GO:0032984 protein-containing complex disassembly
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0018874 benzoate metabolic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006096 glycolytic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009507 chloroplast
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003690 double-stranded DNA binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0003998 acylphosphatase activity
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
RNA-Seq Expression