Spo15790 (gene) | SpinachBase

Overview


Name	Spo15790
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Ubiquitin C-terminal hydrolases superfamily protein
Location	chr5 : 54307881 .. 54312310 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATTTCTAATGTTACCCCTTGATTTGCCGCCTCCGCCACTGTTTAAAGACGTGATGGAAAAAAATATTATCCCTCAGGTATCTAATGCTTGATTGCTCTCACGGTTTCAGATTGTTGAAAGGTTTTTGGATTCTGAGTGTGTGTTGCTTTTCATTTCATTTTATTGACATGTTGACTGTTGAGGTAGTGGAGCTTTATTTAGGCTTTTGGATGACCGGGAGTGGGTGGGTTAGTAGTAGCATGTTGCAATGAGTATAATTTTATATATTTGTCTTCCTCTGAACAATACCTTTGTGTACATTAGGACCTGTTCTTTCAACTGTTTTGCATTGTCTGGTAAAAGGGCATTACTTTTTTGAAAAGAGTCAAAGTCAAACATCATTTTTGCCCTATTAACTAAAAGAGGAACCTCAATGTCGAGGTACAATGTTTCATCACTGCTTGTATAAGCGGTACTGTCCTCTGCCACTTTTCCTGAATTAGTATTCCCTAGATTGTGTCATTCGATTCTTCTGGGGTTGCTATAGCAGCAGCTTCAGAAGAGAGAAAGCATGAGATGTAAGGCAAAGAATACCTTTGTTTCCCATAGCACATTTCCCATTATGCTCATCCATTTGATTCTTGGTCGCAGAATCGGGAGGCTTGGTTGAATATTAAGGTCTTAACTTTGAATAAATGATAATCTGGGAGGGAGTTTCCCTGGTTAGATGTTTCTATAATGGTCACACATTCACACTTGGAACATTGAATGTGCTAGCTGACTATTTGGTGGGTGGAAAATTATGGCTTTTCTAGCAGTTGTAGCTATGCCCTCCTGTGAAGCAGGCTATATCCTCACTACTGATTTGTATCTAGGCACAAATCACGATCTACAGATAATTTGAAGTTGGTCTTCAGTATGTGTATCTTGATTTGTCAAAAAATAGAACGTTAAATTTCTGTAAAAATACTGGGGCTTTCTTTCCTAGTTAGGCATCTGTCATGTATGTCTTTTGGCTTCACCATTTATATTAATGTGTTCATCTTTTTCGCTTTATTTTTCTTGGTAACTGATGGATTTGGCCCATCTGCGTTCTTCTTAGGTTCCACTTTTCAACATAAGGATTTTTTGGTATTTACTACCTTAAAAATACACCACTTTTGTATTTACTACCTTATGAAATTTTTATTATAAATTACTACCTTAAAGTATGATTTTTTTTGCAATCACTACCACTTTACGATTTTCTCATTTTAAAATTTAGATATCTCATTCGTTTCTTAATCATTTTAAGTGATTCAAAGCCCATTCTTCTCGTTTATGTGTAACGATTCCATAGGGATCTTGCTTTTAACATTTTGTAAAAGGTTAAACATATTAAATATTATCTTTAAAACTCTAAAATATTTATGAATCACCAAACGAATTATTTTGAAATGTCGTTCTCAATTAAATCCTTATAGAAAAAGGAAAATAATGAACTTTGAATCACTTTAAACGGTTAAGAAACGAAAGAAATATCCCAGTTTTAAAATGAAAAAACTGTAAAGTGGTAGTAAATGAAAAAAAATTGGAACTTTAAGGTAGTAATTTAAAATAAAAATTTCATAAGGTAGTAAATACAAAAGTGGTGTATTTTTAAGGTAGTAAATACCAAATTTTCCTCAACATAATGAAGAAGTTTGACGGGGAGACCATAACAGAAGTCGTGCGTCCTCAAATAGCTAGGATGCGATATCGTGTAACCAAACTGCCACCTTACATTATTATGCACATGCAGCGTTTCACGAAGAACAACTTCTTTGTTGAGAAGAATCCCACCCTTGGTAAGTATTATGCTTCGTGCTATTATTTTTGTGCTCGTGATGGGACTAGTTTGTGTCATCACAAAGTGGGTTTTTCTAATTTTCTTCTCTATCTTCCTTTTAGTGCAATTTATCTTGTGTTGGACTGAAGCAGTATTTTGCCAAACTTATACTTGAGCTGTACTTTTGTTAATTGATACAGATATGCTTTATTGTGTCGGTTAGTCCTTCTGCTTGCTAAAGTTCAATTGCCTTTTTTATGGAACACTTTCCATTATTCAGCTACTCGAAATCTACTATGGACTTATAGGTATTAGATTAGGTAGGCATGTTTTTAGAAGGTTGTTATTACTCAGAACATGCCCATCCCGTATCCAATGTGTAAATCAGGTGTATACTTGCAACACATTGTGCCTTTCCAGTTTCCAGTTTCCACTTCTCTTATTAAGTTATTTTTATGTCTCATTTCCCTAATTTAACGTCACAAATGTTTCTTGCCAGTTAATTTTCCTGTGAAAAATCTCGAGCTGAAGGATTATATCCCTTTGCCCACACCAGAAGATGATGAAAAATCACGTTCAAAATACGATTTAATCTCAAATATTGTCCATGATGGCAAGCCCAGTGAAGGGTCGTACAGAGTCTTCGTTCAAAGGAAGTAAGAGGAACAATGGTAATTTTTTTGAATTAACTTGGTGCCTCTTAACATTTTAATGTTTTCTTTCTTTTGGAAAACTATATACTCCTGATGTACAAAAAAAATAAAAAAAAAATAAAAAGGAACTATATACTCCTGATGTCAAAAAAAGGAACTATATACTCCTTTAGTGGCTTTGTTCTAGAAATAATATAATCAAGGATTCACCATGCTCTTACTGAAATAAGTCAAATAACCTCTATAATAATTGCTCATTCCCATGAGGGTATATTTGGTACTTGAGTCATATCTTTCCTCTAGAAATGTGACATTTTCTTGGATATCTCAAAACAGCATTTCTGCATATGTTACTATTTACAATTCTTTCCAGGTTGAGGGAGTATTTGTTTCTTTTGCTTATTTTGCTAATATCATTCGAACTGTTAAAATAGTCTTGCGATTTCCGGCTCATATCAGTTCCTATTCGGTTCTGTGCAGGTATGAGGTGCAGGACTTGCATGTTTCGGAGAAACTTCCCCAGATGGTTGCTCTTTCGGAAGCCTACATTCAAGTGTATGAGCTACAAGACCAACATTGAAAACCCGGTGGATAACAAAGTCGCCATCTGTCAAACTTGGAAATGTTGCCATCAAGTTTTGCTGTTTAATTTGGTTGTACATAGGATGTTATACTTCAATCAATTCCGTGCTTGCAAGATACACTTCCAGAAATAGAGAAAAGGTAGTTGCAACATTTTAAAGTGCAGCAGTTGTAATCCTGTATAATTTATTATCCGTTCTCAAATGGTTGTACGTAGGTTTCGATCTTCATTTCTTCACCATTGTACGAAGAGATTTCAAAGGGAAGAGTCAAGTTTCTATTGCTCATCCTAGAACATTTTGGCCCCTGCCCTCTAAGGAGTAGTTCAGTGATAATGGAAAAAGTCGTATGTTGTCGAGATTTTTAACCCCTTTCACAATGTTTATGGGATGATTCTTGGTTTGTGAGTGTTCTACCACAACATTTCTCGAAAAATGTATGTGTATCATTCTTGAAACTCCAAGAACACGAGGCAAAGGTAGCCCAACCTTCTTTTGTAACGAGTTATTCTCATCTCTTTTAGTTTCTAATGCCATAAGAAAAGGAGACGGAAAGCTTTACATCTAATGTGAAGTTGAAGAATTAAATTACTATCTCTTCATTATTGTTATTTTCTTTCACATGATATCAAAATCTTTAGTAAAATTAATAGTTCATGATACGATCACAATCAAAAGCCGAATTGTAATGAAAATTATTAGGTGCACCGTGCACCCATGGATATTTTTATGCTCTTTGGTGATCCCTACCACATTTTCTCCTTATTTGTAAGGAGAAAATATGAGAGGGTGTACTGTGCACCCGGGTGCATGTATATGGTCTATAATTGTAGGCCAGAATAAAGCTGATTGCTAGTATTAAAAATATGATTACATTGTGGGATTTAGGATTGTATTAATTTGCTACTTAAAAAATTACACCTGTAATACGACATCATGTGATCCATAAATAGTGTACAAAATTAATATAGTAGGACTATTAATTTGTCGATGCAACAAATTCACCTTGGCCAGACAATTCCCACGTCAAACCACAAAAGAAAACAACCCAAGTAACTTTTAATGCTCTGTCCTGGTTCAAGTCAAAAAAACAACATTAAGAAAACACAATTGACAATTGACAATTGACAATTGAAGAACGCCATTTAGCTTTTTGCTAAAGTAGATAAAATGTGGTTGTTATTCTATTTCCTAGCACCTTCTAAACCACTTTGGCTAAGCCCTTGGGTCTCTTTGACTCTTTAGTCTAAAGTTCTAGATGATCAAAAACCAACCATAAAATTTGTCAACTCCATTGATAATTAATATTTCTAAAATCTTAAAGAGGAGCAAAATCGATCCGATAAGCAAAAAAACGGGATACTACGACGACGACAACAACAACAGTAATCCGGCAGATACCTAA

mRNA sequence

ATGCCATTTCTAATGTTACCCCTTGATTTGCCGCCTCCGCCACTGTTTAAAGACGTGATGGAAAAAAATATTATCCCTCAGATTGTGTCATTCGATTCTTCTGGGGTTGCTATAGCAGCAGCTTCAGAAGAGAGAAAGCATGAGATGTATGAGGTGCAGGACTTGCATGTTTCGGAGAAACTTCCCCAGATGGTTGCTCTTTCGGAAGCCTACATTCAAAGGAGCAAAATCGATCCGATAAGCAAAAAAACGGGATACTACGACGACGACAACAACAACAGTAATCCGGCAGATACCTAA

Coding sequence (CDS)

ATGCCATTTCTAATGTTACCCCTTGATTTGCCGCCTCCGCCACTGTTTAAAGACGTGATGGAAAAAAATATTATCCCTCAGATTGTGTCATTCGATTCTTCTGGGGTTGCTATAGCAGCAGCTTCAGAAGAGAGAAAGCATGAGATGTATGAGGTGCAGGACTTGCATGTTTCGGAGAAACTTCCCCAGATGGTTGCTCTTTCGGAAGCCTACATTCAAAGGAGCAAAATCGATCCGATAAGCAAAAAAACGGGATACTACGACGACGACAACAACAACAGTAATCCGGCAGATACCTAA

Protein sequence

MPFLMLPLDLPPPPLFKDVMEKNIIPQIVSFDSSGVAIAAASEERKHEMYEVQDLHVSEKLPQMVALSEAYIQRSKIDPISKKTGYYDDDNNNSNPADT

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo15790.1	Spo15790.1	mRNA

Homology

[Close]

BLAST of Spo15790.1 vs. NCBI nr
Match: gi|902194028|gb|KNA12437.1| (hypothetical protein SOVF_125660 [Spinacia oleracea])

HSP 1 Score: 60.5 bits (145), Expect = 2.000e-6
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 1


		  
Query: 1   MPFLMLPLDLPPPPLFKDVMEKNIIPQIVSFDS 34
           MPFLMLPLDLPPPPLFKDVMEKNIIPQ+  F++
Sbjct: 362 MPFLMLPLDLPPPPLFKDVMEKNIIPQVPLFNT 394

[Close]

BLAST of Spo15790.1 vs. NCBI nr
Match: gi|565442435|ref|XP_006283485.1| (hypothetical protein CARUB_v10004538mg [Capsella rubella])

HSP 1 Score: 59.3 bits (142), Expect = 4.400e-6
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1


		  
Query: 1   MPFLMLPLDLPPPPLFKDVMEKNIIPQIVSFD 33
           MPFLML LDLPPPPLFKDVMEKNIIPQ+  FD
Sbjct: 368 MPFLMLGLDLPPPPLFKDVMEKNIIPQVALFD 399

[Close]

BLAST of Spo15790.1 vs. NCBI nr
Match: gi|22328871|ref|NP_193966.2| (ubiquitin C-terminal hydrolases superfamily protein [Arabidopsis thaliana])

HSP 1 Score: 59.3 bits (142), Expect = 4.400e-6
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1


		  
Query: 1   MPFLMLPLDLPPPPLFKDVMEKNIIPQIVSFD 33
           MPFLML LDLPPPPLFKDVMEKNIIPQ+  FD
Sbjct: 337 MPFLMLGLDLPPPPLFKDVMEKNIIPQVALFD 368

[Close]

BLAST of Spo15790.1 vs. NCBI nr
Match: gi|727528116|ref|XP_010439339.1| (PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Camelina sativa])

HSP 1 Score: 59.3 bits (142), Expect = 4.400e-6
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1


		  
Query: 1   MPFLMLPLDLPPPPLFKDVMEKNIIPQIVSFD 33
           MPFLML LDLPPPPLFKDVMEKNIIPQ+  FD
Sbjct: 359 MPFLMLGLDLPPPPLFKDVMEKNIIPQVALFD 390

[Close]

BLAST of Spo15790.1 vs. NCBI nr
Match: gi|2832685|emb|CAA16785.1| (putative protein [Arabidopsis thaliana])

HSP 1 Score: 59.3 bits (142), Expect = 4.400e-6
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1


		  
Query: 1   MPFLMLPLDLPPPPLFKDVMEKNIIPQIVSFD 33
           MPFLML LDLPPPPLFKDVMEKNIIPQ+  FD
Sbjct: 304 MPFLMLGLDLPPPPLFKDVMEKNIIPQVALFD 335

[Close]

BLAST of Spo15790.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QYU4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_125660 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.400e-6
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 1


		  
Query: 1   MPFLMLPLDLPPPPLFKDVMEKNIIPQIVSFDS 34
           MPFLMLPLDLPPPPLFKDVMEKNIIPQ+  F++
Sbjct: 362 MPFLMLPLDLPPPPLFKDVMEKNIIPQVPLFNT 394

[Close]

BLAST of Spo15790.1 vs. UniProtKB/TrEMBL
Match: F4JL64_ARATH (Ubiquitin C-terminal hydrolases superfamily protein OS=Arabidopsis thaliana GN=At4g22350 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.000e-6
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1


		  
Query: 1   MPFLMLPLDLPPPPLFKDVMEKNIIPQIVSFD 33
           MPFLML LDLPPPPLFKDVMEKNIIPQ+  FD
Sbjct: 366 MPFLMLGLDLPPPPLFKDVMEKNIIPQVALFD 397

[Close]

BLAST of Spo15790.1 vs. UniProtKB/TrEMBL
Match: D7ME50_ARALL (Ubiquitin carboxyl-terminal hydrolase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_492629 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.000e-6
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1


		  
Query: 1   MPFLMLPLDLPPPPLFKDVMEKNIIPQIVSFD 33
           MPFLML LDLPPPPLFKDVMEKNIIPQ+  FD
Sbjct: 333 MPFLMLGLDLPPPPLFKDVMEKNIIPQVALFD 364

[Close]

BLAST of Spo15790.1 vs. UniProtKB/TrEMBL
Match: A0A087GG02_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G050600 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.000e-6
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1


		  
Query: 1   MPFLMLPLDLPPPPLFKDVMEKNIIPQIVSFD 33
           MPFLML LDLPPPPLFKDVMEKNIIPQ+  FD
Sbjct: 347 MPFLMLGLDLPPPPLFKDVMEKNIIPQVALFD 378

[Close]

BLAST of Spo15790.1 vs. UniProtKB/TrEMBL
Match: R0GHU2_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10004538mg PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.000e-6
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1


		  
Query: 1   MPFLMLPLDLPPPPLFKDVMEKNIIPQIVSFD 33
           MPFLML LDLPPPPLFKDVMEKNIIPQ+  FD
Sbjct: 368 MPFLMLGLDLPPPPLFKDVMEKNIIPQVALFD 399

[Close]

BLAST of Spo15790.1 vs. TAIR (Arabidopsis)
Match: AT4G22350.2 (Ubiquitin C-terminal hydrolases superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.500e-9
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1


		  
Query: 1   MPFLMLPLDLPPPPLFKDVMEKNIIPQIVSFD 33
           MPFLML LDLPPPPLFKDVMEKNIIPQ+  FD
Sbjct: 366 MPFLMLGLDLPPPPLFKDVMEKNIIPQVALFD 397

[Close]

BLAST of Spo15790.1 vs. TAIR (Arabidopsis)
Match: AT4G22410.1 (Ubiquitin C-terminal hydrolases superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.300e-8
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 1


		  
Query: 1   MPFLMLPLDLPPPPLFKDVMEKNIIPQIVSFD 33
           M FLML LDLPPPPLFKDVMEKNIIPQ+  FD
Sbjct: 253 MSFLMLGLDLPPPPLFKDVMEKNIIPQVALFD 284

[Close]

BLAST of Spo15790.1 vs. TAIR (Arabidopsis)
Match: AT4G22285.1 (Ubiquitin C-terminal hydrolases superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.300e-8
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 1


		  
Query: 1   MPFLMLPLDLPPPPLFKDVMEKNIIPQIVSFD 33
           M FLML LDLPPPPLFKDVMEKNIIPQ+  FD
Sbjct: 368 MSFLMLGLDLPPPPLFKDVMEKNIIPQVALFD 399

The following BLAST results are available for this feature:

BLAST of Spo15790.1 vs. NCBI nr
BLAST of Spo15790.1 vs. UniProtKB/TrEMBL
BLAST of Spo15790.1 vs. ExPASy Swiss-Prot
BLAST of Spo15790.1 vs. TAIR (Arabidopsis)

BLAST of Spo15790.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902194028\|gb\|KNA12437.1\|	2.0e-6	84.8	hypothetical protein SOVF_1256...	[more]
gi\|565442435\|ref\|XP_006283485.1\|	4.4e-6	87.5	hypothetical protein CARUB_v10...	[more]
gi\|22328871\|ref\|NP_193966.2\|	4.4e-6	87.5	ubiquitin C-terminal hydrolase...	[more]
gi\|727528116\|ref\|XP_010439339.1\|	4.4e-6	87.5	PREDICTED: U4/U6.U5 tri-snRNP-...	[more]
gi\|2832685\|emb\|CAA16785.1\|	4.4e-6	87.5	putative protein [Arabidopsis ...	[more]

BLAST of Spo15790.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QYU4_SPIOL	1.4e-6	84.8	Uncharacterized protein OS=Spi...	[more]
F4JL64_ARATH	3.0e-6	87.5	Ubiquitin C-terminal hydrolase...	[more]
D7ME50_ARALL	3.0e-6	87.5	Ubiquitin carboxyl-terminal hy...	[more]
A0A087GG02_ARAAL	3.0e-6	87.5	Uncharacterized protein OS=Ara...	[more]
R0GHU2_9BRAS	3.0e-6	87.5	Uncharacterized protein OS=Cap...	[more]

BLAST of Spo15790.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo15790.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT4G22350.2	1.5e-9	87.5	Ubiquitin C-terminal hydrolase...	[more]
AT4G22410.1	1.3e-8	84.3	Ubiquitin C-terminal hydrolase...	[more]
AT4G22285.1	1.3e-8	84.3	Ubiquitin C-terminal hydrolase...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001510	RNA methylation
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0007034	vacuolar transport
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0008152	metabolic process
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0010817	regulation of hormone levels
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:0060560	developmental growth involved in morphogenesis
biological_process	GO:0048869	cellular developmental process
biological_process	GO:0016043	cellular component organization
biological_process	GO:0016049	cell growth
biological_process	GO:0009058	biosynthetic process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0030904	retromer complex
molecular_function	GO:0004045	aminoacyl-tRNA hydrolase activity
molecular_function	GO:0008171	O-methyltransferase activity
molecular_function	GO:0046983	protein dimerization activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo10300	0.69	Barchart \| Table
Spo18220	0.68	Barchart \| Table
Spo04826	0.67	Barchart \| Table
Spo04959	0.67	Barchart \| Table
Spo03006	0.66	Barchart \| Table
Spo09469	0.65	Barchart \| Table