Spo15619 (gene)

Overview
NameSpo15619
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPhotosystem II 5 kDa protein
Locationchr4 : 6953514 .. 6953813 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCATCACTATGACAGCCTCATTCCTCGGCACCACCGTGTCGAAACAGCCACCCACCCACCACCTCCGCCGTGGTGTAGTGATGGCCAAGGCGATGCCAGAAACCACCACCACCACCAAGGAAGAAACCAGTTCAAAGAGAAGGGATTTGGTGTTTGCCGTTGCAGCTGCCGCGGCGTGCTCCGTAGCAAGAATTGCCATGGCAGAAGAGCCTAAACGAGGAACACCAGAAGCTAAGAAGAAGTATGCACCAGTTTGCGTCACTATGCCGTCAGCAAGGATCTGTTACAAGTGA

mRNA sequence

ATGGCTTCCATCACTATGACAGCCTCATTCCTCGGCACCACCGTGTCGAAACAGCCACCCACCCACCACCTCCGCCGTGGTGTAGTGATGGCCAAGGCGATGCCAGAAACCACCACCACCACCAAGGAAGAAACCAGTTCAAAGAGAAGGGATTTGGTGTTTGCCGTTGCAGCTGCCGCGGCGTGCTCCGTAGCAAGAATTGCCATGGCAGAAGAGCCTAAACGAGGAACACCAGAAGCTAAGAAGAAGTATGCACCAGTTTGCGTCACTATGCCGTCAGCAAGGATCTGTTACAAGTGA

Coding sequence (CDS)

ATGGCTTCCATCACTATGACAGCCTCATTCCTCGGCACCACCGTGTCGAAACAGCCACCCACCCACCACCTCCGCCGTGGTGTAGTGATGGCCAAGGCGATGCCAGAAACCACCACCACCACCAAGGAAGAAACCAGTTCAAAGAGAAGGGATTTGGTGTTTGCCGTTGCAGCTGCCGCGGCGTGCTCCGTAGCAAGAATTGCCATGGCAGAAGAGCCTAAACGAGGAACACCAGAAGCTAAGAAGAAGTATGCACCAGTTTGCGTCACTATGCCGTCAGCAAGGATCTGTTACAAGTGA

Protein sequence

MASITMTASFLGTTVSKQPPTHHLRRGVVMAKAMPETTTTTKEETSSKRRDLVFAVAAAAACSVARIAMAEEPKRGTPEAKKKYAPVCVTMPSARICYK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo15619.1Spo15619.1mRNA


Homology
[Close]
BLAST of Spo15619.1 vs. NCBI nr
Match: gi|902221760|gb|KNA18995.1| (hypothetical protein SOVF_065540 [Spinacia oleracea])

HSP 1 Score: 189.5 bits (480), Expect = 2.800e-45
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

		  

Query: 1   MASITMTASFLGTTVSKQPPTHHLRRGVVMAKAMPETTTTTKEETSSKRRDLVFAVAAAA 60
           MASITMTASFLGTTVSKQPPTHHLRRGVVMAKAMPETTTTTKEETSSKRRDLVFAVAAAA
Sbjct: 1   MASITMTASFLGTTVSKQPPTHHLRRGVVMAKAMPETTTTTKEETSSKRRDLVFAVAAAA 60

Query: 61  ACSVARIAMAEEPKRGTPEAKKKYAPVCVTMPSARICYK 100
           ACSVARIAMAEEPKRGTPEAKKKYAPVCVTMPSARICYK
Sbjct: 61  ACSVARIAMAEEPKRGTPEAKKKYAPVCVTMPSARICYK 99
[Close]
BLAST of Spo15619.1 vs. NCBI nr
Match: gi|731325705|ref|XP_010673652.1| (PREDICTED: photosystem II 5 kDa protein, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 145.2 bits (365), Expect = 6.100e-32
Identity = 81/102 (79.41%), Postives = 87/102 (85.29%), Query Frame = 1 

		  

Query: 1   MASITMTASFLGTTVSKQPPTHHLRRGVVMAKAM---PETTTTTKEETSSKRRDLVFAVA 60
           MASITMT SFLG T SKQP T   RRGVVMAKAM   PET   ++EET SKRRDL+FA A
Sbjct: 1   MASITMTPSFLGVTASKQPSTP-ARRGVVMAKAMRPVPETRADSEEETGSKRRDLMFAAA 60

Query: 61  AAAACSVARIAMAEEPKRGTPEAKKKYAPVCVTMPSARICYK 100
           AAAACS+A+IAMAEEPKRG+PEAKKKYAPVCVTMPSARICYK
Sbjct: 61  AAAACSIAKIAMAEEPKRGSPEAKKKYAPVCVTMPSARICYK 101
[Close]
BLAST of Spo15619.1 vs. NCBI nr
Match: gi|743904121|ref|XP_011045423.1| (PREDICTED: photosystem II 5 kDa protein, chloroplastic-like [Populus euphratica])

HSP 1 Score: 114.8 bits (286), Expect = 8.800e-23
Identity = 69/106 (65.09%), Postives = 84/106 (79.25%), Query Frame = 1 

		  

Query: 1   MASITMTASFL-GTTVSKQPPTHHLRRGVVMAKAMPETTTTT-----KEETSSKRRDLVF 60
           MAS+TMTASFL G+T++KQP T   RRG+++AKA   T         KEE+SS RRDL+F
Sbjct: 1   MASMTMTASFLAGSTMAKQPLTTPPRRGLIVAKASRTTEGVNVEMKNKEESSSGRRDLMF 60

Query: 61  AVAAAAACSVARIAMA-EEPKRGTPEAKKKYAPVCVTMPSARICYK 100
           A AAAAA S+AR+A+A EEP+RGTPEAKKKYAP+CVTMP+ARIC K
Sbjct: 61  AAAAAAAFSIARVAIADEEPQRGTPEAKKKYAPICVTMPTARICRK 106
[Close]
BLAST of Spo15619.1 vs. NCBI nr
Match: gi|954201704|gb|KRX12134.1| (Photosystem II 5 kDa protein, chloroplastic [Trichinella nelsoni])

HSP 1 Score: 114.4 bits (285), Expect = 1.100e-22
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 1 

		  

Query: 1   MASITMTASFLGTTVSKQPPTHHLRRGVVMAKAM--PETTTTT------KEETSSKRRDL 60
           MAS+TMTASFL +T++K P T   RR +++AKA   PE    T      KEE+SS RRDL
Sbjct: 1   MASMTMTASFLASTITK-PSTP--RRSLIVAKASRAPEAEKVTVEMKQSKEESSSGRRDL 60

Query: 61  VFAVAAAAACSVARIAMAEEPKRGTPEAKKKYAPVCVTMPSARICYK 100
           +FA AAAAACS+A++AMA+EP+RGTP AKKKYAPVCVTMP+ARIC K
Sbjct: 61  IFAAAAAAACSIAKVAMADEPERGTPAAKKKYAPVCVTMPTARICRK 104
[Close]
BLAST of Spo15619.1 vs. NCBI nr
Match: gi|470111072|ref|XP_004291777.1| (PREDICTED: photosystem II 5 kDa protein, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 114.4 bits (285), Expect = 1.100e-22
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 1 

		  

Query: 1   MASITMTASFLGTTVSKQPPTHHLRRGVVMAKAM--PETTTTT------KEETSSKRRDL 60
           MAS+TMTASFL +T++K P T   RR +++AKA   PE    T      KEE+SS RRDL
Sbjct: 1   MASMTMTASFLASTITK-PSTP--RRSLIVAKASRAPEAEKVTVELKQSKEESSSGRRDL 60

Query: 61  VFAVAAAAACSVARIAMAEEPKRGTPEAKKKYAPVCVTMPSARICYK 100
           +FA AAAAACS+A++AMA+EP+RGTP AKKKYAPVCVTMP+ARIC K
Sbjct: 61  IFAAAAAAACSIAKVAMADEPERGTPAAKKKYAPVCVTMPTARICRK 104
[Close]
BLAST of Spo15619.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RHP1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_065540 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.000e-45
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

		  

Query: 1   MASITMTASFLGTTVSKQPPTHHLRRGVVMAKAMPETTTTTKEETSSKRRDLVFAVAAAA 60
           MASITMTASFLGTTVSKQPPTHHLRRGVVMAKAMPETTTTTKEETSSKRRDLVFAVAAAA
Sbjct: 1   MASITMTASFLGTTVSKQPPTHHLRRGVVMAKAMPETTTTTKEETSSKRRDLVFAVAAAA 60

Query: 61  ACSVARIAMAEEPKRGTPEAKKKYAPVCVTMPSARICYK 100
           ACSVARIAMAEEPKRGTPEAKKKYAPVCVTMPSARICYK
Sbjct: 61  ACSVARIAMAEEPKRGTPEAKKKYAPVCVTMPSARICYK 99
[Close]
BLAST of Spo15619.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CRA2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g072800 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.200e-32
Identity = 81/102 (79.41%), Postives = 87/102 (85.29%), Query Frame = 1 

		  

Query: 1   MASITMTASFLGTTVSKQPPTHHLRRGVVMAKAM---PETTTTTKEETSSKRRDLVFAVA 60
           MASITMT SFLG T SKQP T   RRGVVMAKAM   PET   ++EET SKRRDL+FA A
Sbjct: 1   MASITMTPSFLGVTASKQPSTP-ARRGVVMAKAMRPVPETRADSEEETGSKRRDLMFAAA 60

Query: 61  AAAACSVARIAMAEEPKRGTPEAKKKYAPVCVTMPSARICYK 100
           AAAACS+A+IAMAEEPKRG+PEAKKKYAPVCVTMPSARICYK
Sbjct: 61  AAAACSIAKIAMAEEPKRGSPEAKKKYAPVCVTMPSARICYK 101
[Close]
BLAST of Spo15619.1 vs. UniProtKB/TrEMBL
Match: A0A0V0RC90_9BILA (Photosystem II 5 kDa protein, chloroplastic OS=Trichinella nelsoni GN=PSBT PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 8.000e-23
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 1 

		  

Query: 1   MASITMTASFLGTTVSKQPPTHHLRRGVVMAKAM--PETTTTT------KEETSSKRRDL 60
           MAS+TMTASFL +T++K P T   RR +++AKA   PE    T      KEE+SS RRDL
Sbjct: 1   MASMTMTASFLASTITK-PSTP--RRSLIVAKASRAPEAEKVTVEMKQSKEESSSGRRDL 60

Query: 61  VFAVAAAAACSVARIAMAEEPKRGTPEAKKKYAPVCVTMPSARICYK 100
           +FA AAAAACS+A++AMA+EP+RGTP AKKKYAPVCVTMP+ARIC K
Sbjct: 61  IFAAAAAAACSIAKVAMADEPERGTPAAKKKYAPVCVTMPTARICRK 104
[Close]
BLAST of Spo15619.1 vs. UniProtKB/TrEMBL
Match: A9PH14_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.800e-22
Identity = 69/106 (65.09%), Postives = 84/106 (79.25%), Query Frame = 1 

		  

Query: 1   MASITMTASFL-GTTVSKQPPTHHLRRGVVMAKAMPETTTTT-----KEETSSKRRDLVF 60
           MAS+TMTASFL G+T++KQP T   RRG+++AKA   T         KEE+SS RRDL+F
Sbjct: 1   MASMTMTASFLAGSTMAKQPLTTP-RRGLIVAKASRTTEGVNVEMKNKEESSSGRRDLMF 60

Query: 61  AVAAAAACSVARIAMA-EEPKRGTPEAKKKYAPVCVTMPSARICYK 100
           A AAAAA S+AR+A+A EEP+RGTPEAKKKYAP+CVTMP+ARIC K
Sbjct: 61  AAAAAAAYSIARVAIADEEPERGTPEAKKKYAPICVTMPTARICRK 105
[Close]
BLAST of Spo15619.1 vs. UniProtKB/TrEMBL
Match: A9PIN3_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.800e-22
Identity = 69/106 (65.09%), Postives = 84/106 (79.25%), Query Frame = 1 

		  

Query: 1   MASITMTASFL-GTTVSKQPPTHHLRRGVVMAKAMPETTTTT-----KEETSSKRRDLVF 60
           MAS+TMTASFL G+T++KQP T   RRG+++AKA   T         KEE+SS RRDL+F
Sbjct: 1   MASMTMTASFLAGSTMAKQPLTTP-RRGLIVAKASRTTEGVNVEMKNKEESSSGRRDLMF 60

Query: 61  AVAAAAACSVARIAMA-EEPKRGTPEAKKKYAPVCVTMPSARICYK 100
           A AAAAA S+AR+A+A EEP+RGTPEAKKKYAP+CVTMP+ARIC K
Sbjct: 61  AAAAAAAYSIARVAIADEEPERGTPEAKKKYAPICVTMPTARICRK 105
[Close]
BLAST of Spo15619.1 vs. ExPASy Swiss-Prot
Match: PST2_PETHY (Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.800e-20
Identity = 64/104 (61.54%), Postives = 75/104 (72.12%), Query Frame = 1 

		  

Query: 1   MASITMTASFLG-TTVSKQPPTHHLRRGVVMAKAMPE-----TTTTTKEETSSKRRDLVF 60
           MASITM +SFLG +TV+        RRGVVM KAM E       +  +E  +S RR+L F
Sbjct: 1   MASITMMSSFLGGSTVAPAKVPSANRRGVVMVKAMHEGENNVVISKNEESKNSGRRELFF 60

Query: 61  AVAAAAACSVARIAMA-EEPKRGTPEAKKKYAPVCVTMPSARIC 98
           A+AAAAACSVA+ AMA EEPKRGTPEAKKKY+ VCVT P+ARIC
Sbjct: 61  AMAAAAACSVAKTAMADEEPKRGTPEAKKKYSSVCVTNPTARIC 104
[Close]
BLAST of Spo15619.1 vs. ExPASy Swiss-Prot
Match: PST2_ARATH (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBT PE=3 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 3.600e-16
Identity = 54/101 (53.47%), Postives = 64/101 (63.37%), Query Frame = 1 

		  

Query: 1   MASITMTASFLGTTVSKQPPTHHLRRGVVMAKAMPETTTTTKEETSSK--RRDLVFAVAA 60
           MAS+TMTA+F          T   R  VV A     T +   +E SS   RRDL+F  AA
Sbjct: 1   MASMTMTATFFPAVAKVPSATGGRRLSVVRASTSDNTPSLEVKEQSSTTMRRDLMFTAAA 60

Query: 61  AAACSVARIAMAEE--PKRGTPEAKKKYAPVCVTMPSARIC 98
           AA CS+A++AMAEE  PKRGT  AKKKYA VCVTMP+A+IC
Sbjct: 61  AAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKIC 101
[Close]
BLAST of Spo15619.1 vs. ExPASy Swiss-Prot
Match: PST2_GOSHI (Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum GN=PSBT PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.800e-15
Identity = 54/104 (51.92%), Postives = 68/104 (65.38%), Query Frame = 1 

		  

Query: 1   MASITMTASFLGTTVSKQPPTHHLRRGVVMAKAMP-------ETTTTTKEETSSKRRDLV 60
           MASITMT SFL TT   +      +R +V+A A         + +   K E ++ RR+++
Sbjct: 1   MASITMTTSFLSTTNLTKGSPRITQRRLVVANAAKGAQVESVQMSGERKTEGNNGRREMM 60

Query: 61  FAVAAAAACSVARIAMAEEPKRGTPEAKKKYAPVCVTMPSARIC 98
           FA AAAA CSVA +A AE PKRG+ EAKK YAPVCVTMP+ARIC
Sbjct: 61  FAAAAAAICSVAGVATAE-PKRGSAEAKKAYAPVCVTMPTARIC 103
[Close]
BLAST of Spo15619.1 vs. TAIR (Arabidopsis)
Match: AT1G51400.1 (Photosystem II 5 kD protein)

HSP 1 Score: 92.4 bits (228), Expect = 1.600e-19
Identity = 61/105 (58.10%), Postives = 75/105 (71.43%), Query Frame = 1 

		  

Query: 1   MASITMTASFLGTTVSKQPP--THHLRRGVVMAKAMPETTTTT----KEETSSK-RRDLV 60
           MAS+TMT+SFL  TVS  P   + + RR + + KA     TT+    K+E S K RRDLV
Sbjct: 1   MASMTMTSSFL-PTVSNLPANISSNSRRSLTVVKASGSENTTSLENKKQEQSMKMRRDLV 60

Query: 61  FAVAAAAACSVARIAMAE-EPKRGTPEAKKKYAPVCVTMPSARIC 98
           F  AAAA CS+A++AMA+ EPKRGT  AKKKYAPVCVTMP+A+IC
Sbjct: 61  FTAAAAAVCSLAKVAMADDEPKRGTEAAKKKYAPVCVTMPTAKIC 104
[Close]
BLAST of Spo15619.1 vs. TAIR (Arabidopsis)
Match: AT3G21055.1 (photosystem II subunit T)

HSP 1 Score: 85.5 bits (210), Expect = 2.000e-17
Identity = 54/101 (53.47%), Postives = 64/101 (63.37%), Query Frame = 1 

		  

Query: 1   MASITMTASFLGTTVSKQPPTHHLRRGVVMAKAMPETTTTTKEETSSK--RRDLVFAVAA 60
           MAS+TMTA+F          T   R  VV A     T +   +E SS   RRDL+F  AA
Sbjct: 1   MASMTMTATFFPAVAKVPSATGGRRLSVVRASTSDNTPSLEVKEQSSTTMRRDLMFTAAA 60

Query: 61  AAACSVARIAMAEE--PKRGTPEAKKKYAPVCVTMPSARIC 98
           AA CS+A++AMAEE  PKRGT  AKKKYA VCVTMP+A+IC
Sbjct: 61  AAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKIC 101
The following BLAST results are available for this feature:
BLAST of Spo15619.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902221760|gb|KNA18995.1|2.8e-45100.hypothetical protein SOVF_0655... [more]
gi|731325705|ref|XP_010673652.1|6.1e-3279.4PREDICTED: photosystem II 5 kD... [more]
gi|743904121|ref|XP_011045423.1|8.8e-2365.0PREDICTED: photosystem II 5 kD... [more]
gi|954201704|gb|KRX12134.1|1.1e-2263.5Photosystem II 5 kDa protein, ... [more]
gi|470111072|ref|XP_004291777.1|1.1e-2263.5PREDICTED: photosystem II 5 kD... [more]
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BLAST of Spo15619.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RHP1_SPIOL2.0e-45100.Uncharacterized protein OS=Spi... [more]
A0A0J8CRA2_BETVU4.2e-3279.4Uncharacterized protein OS=Bet... [more]
A0A0V0RC90_9BILA8.0e-2363.5Photosystem II 5 kDa protein, ... [more]
A9PH14_POPTR6.8e-2265.0Putative uncharacterized prote... [more]
A9PIN3_9ROSI6.8e-2265.0Putative uncharacterized prote... [more]
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BLAST of Spo15619.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PST2_PETHY1.8e-2061.5Photosystem II 5 kDa protein, ... [more]
PST2_ARATH3.6e-1653.4Photosystem II 5 kDa protein, ... [more]
PST2_GOSHI1.8e-1551.9Photosystem II 5 kDa protein, ... [more]
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BLAST of Spo15619.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G51400.11.6e-1958.1Photosystem II 5 kD protein[more]
AT3G21055.12.0e-1753.4photosystem II subunit T[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRODOMPD030057coord: 1..97
score: 4.0
NoneNo IPR availablePANTHERPTHR34940FAMILY NOT NAMEDcoord: 2..99
score: 1.3

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071704 organic substance metabolic process
biological_process GO:0009657 plastid organization
biological_process GO:0010207 photosystem II assembly
biological_process GO:0044238 primary metabolic process
biological_process GO:0015979 photosynthesis
biological_process GO:0030003 cellular cation homeostasis
biological_process GO:0071840 cellular component organization or biogenesis
biological_process GO:0010206 photosystem II repair
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0006754 ATP biosynthetic process
biological_process GO:0006364 rRNA processing
biological_process GO:0050821 protein stabilization
biological_process GO:0042550 photosystem I stabilization
biological_process GO:0009780 photosynthetic NADP+ reduction
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0070838 divalent metal ion transport
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0044424 intracellular part
cellular_component GO:0009523 photosystem II
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0030093 chloroplast photosystem I
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009543 chloroplast thylakoid lumen
molecular_function GO:0030145 manganese ion binding
molecular_function GO:0016168 chlorophyll binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo038470.72Barchart | Table
Spo247970.70Barchart | Table
Spo052960.68Barchart | Table
Spo058500.67Barchart | Table
Spo012240.65Barchart | Table