Spo15517 (gene)

Overview
NameSpo15517
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_60358 : 2 .. 298 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTCAGGTGGTGCAGGTGCTGCTGCCGCAGAGGCTCCAAAGGAGGAGAAGAAGGTTGAAGAGAAAGAAGAGTCAGATGACGTAAGAACAACTCTATATCATCCTCTAAATTGTGTTTGTGTTGAGTTTTTTTTAGCTACTGAAGAGTGTTATCGTACTTTGCTCACACTTGAAATTTTTTGTTGCAGGATATGGGTTTCAGTCTCTTTGACTAAGTGGGAAGGAGCTGATGTTTACAGCAAGTCTTTGCATTTTAAATATAGCTCAAGTTTTGTTTGCTATTTGGAAATGTTCTAG

mRNA sequence

CCTTCAGGTGGTGCAGGTGCTGCTGCCGCAGAGGCTCCAAAGGAGGAGAAGAAGGTTGAAGAGAAAGAAGAGTCAGATGACGTAAGAACAACTCTATATCATCCTCTAAATTGTGTTTGTGTTGAGTTTTTTTTAGCTACTGAAGAGTGTTATCGTACTTTGCTCACACTTGAAATTTTTTGTTGCAGGATATGGGTTTCAGTCTCTTTGACTAAGTGGGAAGGAGCTGATGTTTACAGCAAGTCTTTGCATTTTAAATATAGCTCAAGTTTTGTTTGCTATTTGGAAATGTTCTAG

Coding sequence (CDS)

CCTTCAGGTGGTGCAGGTGCTGCTGCCGCAGAGGCTCCAAAGGAGGAGAAGAAGGTTGAAGAGAAAGAAGAGTCAGATGACGTAAGAACAACTCTATATCATCCTCTAAATTGTGTTTGTGTTGAGTTTTTTTTAGCTACTGAAGAGTGTTATCGTACTTTGCTCACACTTGAAATTTTTTGTTGCAGGATATGGGTTTCAGTCTCTTTGACTAAGTGGGAAGGAGCTGATGTTTACAGCAAGTCTTTGCATTTTAAATATAGCTCAAGTTTTGTTTGCTATTTGGAAATGTTCTAG

Protein sequence

PSGGAGAAAAEAPKEEKKVEEKEESDDVRTTLYHPLNCVCVEFFLATEECYRTLLTLEIFCCRIWVSVSLTKWEGADVYSKSLHFKYSSSFVCYLEMF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo15517.1Spo15517.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo15517.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15517.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15517.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15517.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009853 photorespiration
biological_process GO:0035999 tetrahydrofolate interconversion
biological_process GO:0000338 protein deneddylation
biological_process GO:0009640 photomorphogenesis
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0009987 cellular process
biological_process GO:0006465 signal peptide processing
biological_process GO:0006508 proteolysis
biological_process GO:0006457 protein folding
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0019538 protein metabolic process
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0042545 cell wall modification
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0001510 RNA methylation
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0048481 plant ovule development
biological_process GO:0006412 translation
biological_process GO:0046907 intracellular transport
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0060003 copper ion export
biological_process GO:0008152 metabolic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0051607 defense response to virus
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0009396 folic acid-containing compound biosynthetic process
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:2001295 malonyl-CoA biosynthetic process
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0009407 toxin catabolic process
biological_process GO:0009651 response to salt stress
biological_process GO:0051788 response to misfolded protein
biological_process GO:0046686 response to cadmium ion
biological_process GO:0032259 methylation
biological_process GO:0042372 phylloquinone biosynthetic process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0010155 regulation of proton transport
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0006506 GPI anchor biosynthetic process
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006090 pyruvate metabolic process
biological_process GO:0006096 glycolytic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0046034 ATP metabolic process
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0046939 nucleotide phosphorylation
biological_process GO:0046777 protein autophosphorylation
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006414 translational elongation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005730 nucleolus
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005839 proteasome core complex
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0005853 eukaryotic translation elongation factor 1 complex
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005829 cytosol
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009507 chloroplast
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0016020 membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0010287 plastoglobule
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005840 ribosome
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009579 thylakoid
cellular_component GO:0009343 biotin carboxylase complex
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005618 cell wall
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
molecular_function GO:0003989 acetyl-CoA carboxylase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004298 threonine-type endopeptidase activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0052624 2-phytyl-1,4-naphthoquinone methyltransferase activity
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0004683 calmodulin-dependent protein kinase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004008 copper-exporting ATPase activity
molecular_function GO:0003690 double-stranded DNA binding
molecular_function GO:0008233 peptidase activity
molecular_function GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0004477 methenyltetrahydrofolate cyclohydrolase activity
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0004017 adenylate kinase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0004075 biotin carboxylase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0016758 transferase activity, transferring hexosyl groups
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo005660.82Barchart | Table
Spo137310.81Barchart | Table
Spo171100.80Barchart | Table
Spo016950.80Barchart | Table
Spo266360.79Barchart | Table
Spo300340.79Barchart | Table
Spo181030.76Barchart | Table
Spo179290.76Barchart | Table
Spo098030.75Barchart | Table
Spo232140.74Barchart | Table
Spo129110.74Barchart | Table
Spo153020.74Barchart | Table
Spo156040.74Barchart | Table
Spo166270.73Barchart | Table
Spo079550.73Barchart | Table
Spo037080.73Barchart | Table
Spo171350.73Barchart | Table
Spo087680.72Barchart | Table
Spo280980.72Barchart | Table
Spo001700.72Barchart | Table
Spo200710.72Barchart | Table
Spo055470.72Barchart | Table
Spo097140.72Barchart | Table
Spo181850.71Barchart | Table
Spo194010.71Barchart | Table
Spo244140.71Barchart | Table
Spo110260.71Barchart | Table
Spo085890.71Barchart | Table
Spo236520.71Barchart | Table
Spo201610.70Barchart | Table
Spo271020.70Barchart | Table
Spo007800.70Barchart | Table
Spo020850.69Barchart | Table
Spo010740.69Barchart | Table
Spo043810.69Barchart | Table
Spo065010.69Barchart | Table
Spo123940.69Barchart | Table
Spo125980.69Barchart | Table
Spo171240.69Barchart | Table
Spo176220.69Barchart | Table
Spo210270.69Barchart | Table
Spo253690.69Barchart | Table
Spo248140.68Barchart | Table
Spo114460.68Barchart | Table
Spo042820.68Barchart | Table
Spo225920.68Barchart | Table
Spo185020.68Barchart | Table
Spo033060.68Barchart | Table
Spo131070.68Barchart | Table
Spo265090.68Barchart | Table
Spo252890.68Barchart | Table
Spo075990.68Barchart | Table
Spo064440.68Barchart | Table
Spo008980.67Barchart | Table
Spo143810.67Barchart | Table
Spo146870.67Barchart | Table
Spo170160.67Barchart | Table
Spo016380.67Barchart | Table
Spo050290.67Barchart | Table
Spo193250.67Barchart | Table
Spo019140.67Barchart | Table
Spo246250.67Barchart | Table
Spo259180.67Barchart | Table
Spo121520.67Barchart | Table
Spo122530.67Barchart | Table
Spo217680.66Barchart | Table
Spo020980.66Barchart | Table
Spo017140.66Barchart | Table
Spo064870.66Barchart | Table
Spo254520.66Barchart | Table
Spo084880.66Barchart | Table
Spo261940.66Barchart | Table
Spo073060.66Barchart | Table
Spo192060.66Barchart | Table
Spo024490.66Barchart | Table
Spo009360.66Barchart | Table
Spo039330.66Barchart | Table
Spo229610.66Barchart | Table
Spo219950.65Barchart | Table
Spo222010.65Barchart | Table
Spo027060.65Barchart | Table
Spo072230.65Barchart | Table
Spo215310.65Barchart | Table
Spo019230.65Barchart | Table
Spo258560.65Barchart | Table
Spo106240.65Barchart | Table
Spo272100.65Barchart | Table
Spo248570.65Barchart | Table