Spo15266 (gene) | SpinachBase

Overview


Name	Spo15266
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr6 : 19662320 .. 19663374 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAACACGTTCGACACTTATAAAAGTAAGAAAAATATTACATCGACACATATCAAACGCGGTCTAAACTTATAAAAAACCTAACATTCACTAATAATACCCTAAATTACAATAAAATTAAAAGTGTGGAAATGCTATGTGAGGTCATACCAATTGCAATTGATGAGAATTTATGTGGCGGTTAACCGCTATTTATAGTGTGGGCGTTTTCAAGTTAGGTAGATGGTAGCCAACTCAGTTTATAAGCTTCATTTCTTGAATTCAATATTCTCAAACCAAACCCCCAAAAAATATCCCAATTTTTGTTTAAAAAATGGGAAGAAATAAAAGTTTTAATCTTATCATCATTCTCCTATTTTCCTTCATTTTATCTACTATTGCATCAAGTAAGTTCCTTAACTTCTGAATTGTTATTCCAATTATTCATTACAAAAACTTTAACTTTATAATTATTTTTAACTCCGTATTAGGAAGCTTGATTGTGAATCAAAATCATGCAGAATCAACACCCCGTGTTCTTCTTGCTCAGGTAATTAATATTAATTAATAATTCTCCTTTTTCTATTATGACTTATTTATGTTTATTATTATTGGATTATTTGAGTAAATTGGTAATTAAATTTAAAATAAAATTCAGGCAGAAGTTGATTTGGGTGTTGTTTATTAATTATTATGGTTGGGTTCAGAAAAATGGAAGAATGGATTTGGAAGTGAATGATTATCCAGGAACTGGAGCTAATAGCAATCATGATCCAGATAAGCCAAAGAATCCAGGAAATAGTGGTTAATTTTGATCCTAATTTCTTATTTTTATGTCTGTTTTATTTGTTTGTACGATGATGTTATTGTATAGCTTTCTTTCAATTGTATAATCATTATGTACTGCAAAGTTATTGCTTTTCTATTTTATCGAACTGTTAATTTGTAATTTTGTATGAACAACTAATTTTATAAGTGTTGTTTTTTGTGGTTGTATATTTTTCTTAAGAGGGGAAATTTAGTGCCAATCCATTTAAAATAACTATTAACACATACTTCCTTTGAACAAAGTACTCG

mRNA sequence

CAAACACGTTCGACACTTATAAAAGTAAGAAAAATATTACATCGACACATATCAAACGCGGTCTAAACTTATAAAAAACCTAACATTCACTAATAATACCCTAAATTACAATAAAATTAAAAGTGTGGAAATGCTATGTGAGGTCATACCAATTGCAATTGATGAGAATTTATGTGGCGGTTAACCGCTATTTATAGTGTGGGCGTTTTCAAGTTAGGTAGATGGTAGCCAACTCAGTTTATAAGCTTCATTTCTTGAATTCAATATTCTCAAACCAAACCCCCAAAAAATATCCCAATTTTTGTTTAAAAAATGGGAAGAAATAAAAGTTTTAATCTTATCATCATTCTCCTATTTTCCTTCATTTTATCTACTATTGCATCAAGAAGCTTGATTGTGAATCAAAATCATGCAGAATCAACACCCCGTGTTCTTCTTGCTCAGAAAAATGGAAGAATGGATTTGGAAGTGAATGATTATCCAGGAACTGGAGCTAATAGCAATCATGATCCAGATAAGCCAAAGAATCCAGGAAATAGTGGTTAATTTTGATCCTAATTTCTTATTTTTATGTCTGTTTTATTTGTTTGTACGATGATGTTATTGTATAGCTTTCTTTCAATTGTATAATCATTATGTACTGCAAAGTTATTGCTTTTCTATTTTATCGAACTGTTAATTTGTAATTTTGTATGAACAACTAATTTTATAAGTGTTGTTTTTTGTGGTTGTATATTTTTCTTAAGAGGGGAAATTTAGTGCCAATCCATTTAAAATAACTATTAACACATACTTCCTTTGAACAAAGTACTCG

Coding sequence (CDS)

ATGGGAAGAAATAAAAGTTTTAATCTTATCATCATTCTCCTATTTTCCTTCATTTTATCTACTATTGCATCAAGAAGCTTGATTGTGAATCAAAATCATGCAGAATCAACACCCCGTGTTCTTCTTGCTCAGAAAAATGGAAGAATGGATTTGGAAGTGAATGATTATCCAGGAACTGGAGCTAATAGCAATCATGATCCAGATAAGCCAAAGAATCCAGGAAATAGTGGTTAA

Protein sequence

MGRNKSFNLIIILLFSFILSTIASRSLIVNQNHAESTPRVLLAQKNGRMDLEVNDYPGTGANSNHDPDKPKNPGNSG

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo15266.1	Spo15266.1	mRNA

Homology

[Close]

BLAST of Spo15266.1 vs. NCBI nr
Match: gi|902167873|gb|KNA07429.1| (hypothetical protein SOVF_171990 [Spinacia oleracea])

HSP 1 Score: 149.4 bits (376), Expect = 2.500e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


		  
Query: 1  MGRNKSFNLIIILLFSFILSTIASRSLIVNQNHAESTPRVLLAQKNGRMDLEVNDYPGTG 60
          MGRNKSFNLIIILLFSFILSTIASRSLIVNQNHAESTPRVLLAQKNGRMDLEVNDYPGTG
Sbjct: 1  MGRNKSFNLIIILLFSFILSTIASRSLIVNQNHAESTPRVLLAQKNGRMDLEVNDYPGTG 60

Query: 61 ANSNHDPDKPKNPGNSG 78
          ANSNHDPDKPKNPGNSG
Sbjct: 61 ANSNHDPDKPKNPGNSG 77

[Close]

BLAST of Spo15266.1 vs. NCBI nr
Match: gi|870844480|gb|KMS97438.1| (hypothetical protein BVRB_5g126950 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 60.1 bits (144), Expect = 2.000e-6
Identity = 44/91 (48.35%), Postives = 55/91 (60.44%), Query Frame = 1


		  
Query: 4  NKSFNLIIILLF-SFILSTIA---SRSLIVNQNHAESTP-RVLLAQK------------- 63
          N   NLII++ F + I S++A   SRSLI+NQN  ES+  RVLL Q              
Sbjct: 3  NNKINLIILIFFCASIFSSLAVPSSRSLIMNQNKLESSSSRVLLTQAAAKVGIDYGWTKE 62

Query: 64 ----NGRMDLEVNDYPGTGANSNHDPDKPKN 73
               GRMD+E+NDYPGTGAN+NH+P KP N
Sbjct: 63 TGKTKGRMDIELNDYPGTGANNNHEP-KPGN 92

[Close]

BLAST of Spo15266.1 vs. NCBI nr
Match: gi|870851880|gb|KMT03870.1| (hypothetical protein BVRB_8g188070 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 58.9 bits (141), Expect = 4.400e-6
Identity = 42/94 (44.68%), Postives = 53/94 (56.38%), Query Frame = 1


		  
Query: 4  NKSFNLIIILLFS----FILSTIASRSLIVNQNHAESTP-RVLLAQ-------------- 63
          N   NLII++ F     F L+  +SRSLI+NQN  +S+  RVLL Q              
Sbjct: 3  NNKINLIILIFFCASIFFSLAVPSSRSLIMNQNKLKSSSSRVLLTQTAAKVGIDYGWTKE 62

Query: 64 ------KNGRMDLEVNDYPGTGANSNHDPDKPKN 73
                  GRMD+E+NDYPGTGAN+NH+P KP N
Sbjct: 63 TGKTKASKGRMDIELNDYPGTGANNNHEP-KPGN 95

[Close]

BLAST of Spo15266.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJJ8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_171990 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.700e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


		  
Query: 1  MGRNKSFNLIIILLFSFILSTIASRSLIVNQNHAESTPRVLLAQKNGRMDLEVNDYPGTG 60
          MGRNKSFNLIIILLFSFILSTIASRSLIVNQNHAESTPRVLLAQKNGRMDLEVNDYPGTG
Sbjct: 1  MGRNKSFNLIIILLFSFILSTIASRSLIVNQNHAESTPRVLLAQKNGRMDLEVNDYPGTG 60

Query: 61 ANSNHDPDKPKNPGNSG 78
          ANSNHDPDKPKNPGNSG
Sbjct: 61 ANSNHDPDKPKNPGNSG 77

[Close]

BLAST of Spo15266.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BBP1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g126950 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.400e-6
Identity = 44/91 (48.35%), Postives = 55/91 (60.44%), Query Frame = 1


		  
Query: 4  NKSFNLIIILLF-SFILSTIA---SRSLIVNQNHAESTP-RVLLAQK------------- 63
          N   NLII++ F + I S++A   SRSLI+NQN  ES+  RVLL Q              
Sbjct: 3  NNKINLIILIFFCASIFSSLAVPSSRSLIMNQNKLESSSSRVLLTQAAAKVGIDYGWTKE 62

Query: 64 ----NGRMDLEVNDYPGTGANSNHDPDKPKN 73
               GRMD+E+NDYPGTGAN+NH+P KP N
Sbjct: 63 TGKTKGRMDIELNDYPGTGANNNHEP-KPGN 92

[Close]

BLAST of Spo15266.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BQT7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g188070 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.100e-6
Identity = 42/94 (44.68%), Postives = 53/94 (56.38%), Query Frame = 1


		  
Query: 4  NKSFNLIIILLFS----FILSTIASRSLIVNQNHAESTP-RVLLAQ-------------- 63
          N   NLII++ F     F L+  +SRSLI+NQN  +S+  RVLL Q              
Sbjct: 3  NNKINLIILIFFCASIFFSLAVPSSRSLIMNQNKLKSSSSRVLLTQTAAKVGIDYGWTKE 62

Query: 64 ------KNGRMDLEVNDYPGTGANSNHDPDKPKN 73
                  GRMD+E+NDYPGTGAN+NH+P KP N
Sbjct: 63 TGKTKASKGRMDIELNDYPGTGANNNHEP-KPGN 95

The following BLAST results are available for this feature:

BLAST of Spo15266.1 vs. NCBI nr
BLAST of Spo15266.1 vs. UniProtKB/TrEMBL
BLAST of Spo15266.1 vs. ExPASy Swiss-Prot
BLAST of Spo15266.1 vs. TAIR (Arabidopsis)

BLAST of Spo15266.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3


Match Name	E-value	Identity	Description
gi\|902167873\|gb\|KNA07429.1\|	2.5e-33	100.	hypothetical protein SOVF_1719...	[more]
gi\|870844480\|gb\|KMS97438.1\|	2.0e-6	48.3	hypothetical protein BVRB_5g12...	[more]
gi\|870851880\|gb\|KMT03870.1\|	4.4e-6	44.6	hypothetical protein BVRB_8g18...	[more]

BLAST of Spo15266.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3


Match Name	E-value	Identity	Description
A0A0K9QJJ8_SPIOL	1.7e-33	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BBP1_BETVU	1.4e-6	48.3	Uncharacterized protein OS=Bet...	[more]
A0A0J8BQT7_BETVU	3.1e-6	44.6	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo15266.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo15266.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33474	FAMILY NOT NAMED	coord: 1..73 score: 6.5
None	No IPR available	PANTHER	PTHR33474:SF2	SUBFAMILY NOT NAMED	coord: 1..73 score: 6.5

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016556	mRNA modification
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0015994	chlorophyll metabolic process
biological_process	GO:0016126	sterol biosynthetic process
biological_process	GO:0009738	abscisic acid-activated signaling pathway
biological_process	GO:0042631	cellular response to water deprivation
biological_process	GO:0006749	glutathione metabolic process
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0009407	toxin catabolic process
biological_process	GO:0030154	cell differentiation
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0009814	defense response, incompatible interaction
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0018160	peptidyl-pyrromethane cofactor linkage
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006782	protoporphyrinogen IX biosynthetic process
biological_process	GO:0009409	response to cold
biological_process	GO:0006364	rRNA processing
biological_process	GO:0009697	salicylic acid biosynthetic process
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0019760	glucosinolate metabolic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0032984	protein-containing complex disassembly
biological_process	GO:0006631	fatty acid metabolic process
biological_process	GO:0006508	proteolysis
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0006457	protein folding
biological_process	GO:0009231	riboflavin biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0035265	organ growth
biological_process	GO:0009813	flavonoid biosynthetic process
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009349	riboflavin synthase complex
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0048046	apoplast
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0005768	endosome
cellular_component	GO:0010007	magnesium chelatase complex
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0004721	phosphoprotein phosphatase activity
molecular_function	GO:0005504	fatty acid binding
molecular_function	GO:0045430	chalcone isomerase activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0043621	protein self-association
molecular_function	GO:0003756	protein disulfide isomerase activity
molecular_function	GO:0016851	magnesium chelatase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0004746	riboflavin synthase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0046422	violaxanthin de-epoxidase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0004602	glutathione peroxidase activity
molecular_function	GO:0004418	hydroxymethylbilane synthase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo04200	0.74	Barchart \| Table
Spo05307	0.74	Barchart \| Table
Spo00214	0.73	Barchart \| Table
Spo10987	0.73	Barchart \| Table
Spo14914	0.73	Barchart \| Table
Spo15365	0.72	Barchart \| Table
Spo08407	0.72	Barchart \| Table
Spo25804	0.72	Barchart \| Table
Spo26975	0.71	Barchart \| Table
Spo09387	0.70	Barchart \| Table
Spo18184	0.70	Barchart \| Table
Spo05265	0.70	Barchart \| Table
Spo24913	0.70	Barchart \| Table
Spo06453	0.70	Barchart \| Table
Spo12867	0.69	Barchart \| Table
Spo02396	0.69	Barchart \| Table
Spo21591	0.69	Barchart \| Table
Spo01252	0.68	Barchart \| Table
Spo01342	0.68	Barchart \| Table
Spo15390	0.68	Barchart \| Table
Spo01928	0.68	Barchart \| Table
Spo01628	0.67	Barchart \| Table
Spo09282	0.67	Barchart \| Table
Spo07548	0.67	Barchart \| Table
Spo15890	0.67	Barchart \| Table
Spo09384	0.67	Barchart \| Table
Spo15130	0.66	Barchart \| Table
Spo00966	0.66	Barchart \| Table
Spo02918	0.66	Barchart \| Table
Spo04123	0.66	Barchart \| Table
Spo06637	0.66	Barchart \| Table
Spo11688	0.66	Barchart \| Table
Spo12022	0.66	Barchart \| Table
Spo12682	0.66	Barchart \| Table
Spo16005	0.66	Barchart \| Table
Spo19341	0.66	Barchart \| Table
Spo26610	0.66	Barchart \| Table
Spo20050	0.65	Barchart \| Table
Spo25008	0.65	Barchart \| Table
Spo17740	0.65	Barchart \| Table
Spo02106	0.65	Barchart \| Table
Spo23352	0.65	Barchart \| Table