Spo15234 (gene)

Overview
NameSpo15234
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 80374526 .. 80377735 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATCTTTTAATTCGAATGAAGAGACACAAAATTTGAGTAAGAATTTCTCTTTGAATCTAGGTTAGAACTGGTTATTGCATTATATTTGCATGATGTTTTGGTAATTTTTGTTTTCTGATGAGATTGGATGAAATTACTTTGTTGATAGATTGTTGTTTATGTTTGAGTTGCAATTGATGTTTTTTTCCCCTTCTACTTTCCATTAATTAGATAATTAAAATTCCAGTTAACCTCCAAACATGGTAGAATTTGAAATACCAGAATTGAAATTCTTATATTTCCCAAACATATACGGAGTAATTTGGATTTGAAAGTTGGAATTTGAATTTCTAGATTTAAAATGAAACATTTGAAATCAAAGTATGATATCCAAACACTACCTAACATTACTTTGTTGCTTCTTACATTACATTTGAAAATAAACGTTGTTTGCTTCATTTTTAGCGTGATTTTGCTCATTTTTTTACGAGGTTATCCATGAATTCTGCCGAGTATGTCTAAACCTTATGTTTCCCGTATTTGGAATTTTTCTAGCATATTTCAATTACTCATGGGTCAACAGACAACAAGAAAAAAGACAAGAAGCAAGAACTAAAAATTATAACAAAGAAGCTCCCTCCGATGAGCCCAAGTCATGAGTTGGACCGGAAACCGCAAAATATTCGAATAAGGCCAGGAGATTCCGCAATTGGAGAGAGGTTAAGTCACCAAAATTGGATCAGGGAGAAGATTCCAATGTAACAACTAACAAGGAACAACACTAGATTAGAAGAATCTGAATAAATAAGAAGTTAAGAACTTTAGTGAAACCTCAACGAATCACCATATGAAGGCCCAAATGACAAGCCATCAACTCAACCTAAAGCGCAGAACCAAGAAAACAGGCCCGGGCTCCTCCCCCAGAGATAAAAGTACACATAGGTTGATGCAAACACAAGCTAAGCAAGATTACTTGTACAAGATTTGACAAGCTAAGCAAGAAATTGTAAACAATTGTGCTTTCTTTAAAAATTGTTTTACATGAAAATATTCCTCGTTTAAAATATTATTCCGTCAAAATAAATGAGGCAGGAGGTCATGGTGTAATGTTAGGTGAGCTAACCTGACATAATTCTGAAATCAGTTACCCTTAAGTAGTTAGATATGTTGTTACTTTGATATGTTAGTGTAGTATATAAATACAATGTAATCCATCATTATATTACTCAATCAATAAAATTTACAAAGTTTCCTACTCTTCTCTCTTCTATCTATTGTTTTTTCTCTTCTCTTTCTTTCTTAAGAATTTTGTTTCTCTCTTTCTCTTTTTCTTTCTCTATCTTATATTTTCCTCCATTAACACATCAAGCAGTTGAGAAAGGTATCAGAGCCAACCTACTGCAAATTGAGTGATTCGATTGAATTGTAGTTCTATTCTTCGATATTGGAGTCAGCAGTTCTTGAAGCTGGGAATTAGTGGGGTTAGAAATCGGGACAAATTGTTGAAGAAATCAAGGTAAGAAATCAAGAAGTATAACTGATTGATTGCTCAATTTTCAATCTTCTACACGTTTTTCTGCCATTATTACAACTTGATTTCCTAGTTTTTTGAAGTATTTTTCATGCATTCAAAGTGTTTGATAAAATGTCAAGCAGAAATCCAACATGAATTTAGCTAAAATCAGTTACAATAAACTTCCAGGATAGTTTCCTCTTCACAGTGATCATTTAAACAAACTCAATTTCTGAATTTGGAGTCCAATTCTATATACCCAATTTCTGCAAATCTAAATTACAATTCAAGATCATGGGGAAAATTGAAGAAACATGTGATAAGATTCTACAAATTCTTGTTGAGATGAAGGAATTAACAACATCAAGAAGAGGTGGTAAATCTGTGCAATCTTCTACTGTTTTTGAGATCAATTCAACCGGGTCTCATGAGTATAACCCTGTTTTCCAAAATTTTATGGGTCTCATCCTAGGACATGGATAAAGAATTGCAACAAGAATTCCACTCTTCATGATATTCTTGAAGATGGTGTTAAAGTGGAATTAGCTTCTCAAAACATGTTTGATAAGGCTAAAAAATAGTCTGATTCATACTTGTTTGGGAGGAAGTCTTACATTGATTGGACATACTTCTTTCTTGATGTGTCTGCAAAATTTAGAAATGATGCATCTATAAAAGTGGAAGACTGTAATAGTTATATACCCAAACAAGAATTATTAGTTGAATCAAAGTTATAATTTCATGGTTATGATAATGGGTTACTAGTAACCAAGTCTGGAGGTTTTAGTTATGAACCAATTTCCAATGTTGATAGTCAGTCATGCAAGACTCTTTCAGTTAATAATTCGTGTAGTTACTTGAATTCAAGTTCATGTGTTGTTGCATCCATGATGGATGAAGAGCAAGAGGAAGTAGTGGAATGTGTTGGGCTTGTAGAAGAACAATTGAAATGTTCCCCTGTATCACATTCTTCTCTAGTAGAAGTTGTCACCTCGTCTACAAACACAAAACAACTAATTCTTCCATCACCATCAATTGAAAATAACCTACTGATCTCAACCGAAATCAAGCCAAAATAGTCTGTCAGATTTCAGGATTCTGAGTATGTTTCAGCTAATGTTGAGGTGAAGATGGTTACCAAAACGTTTGGTGATCTTTCTGTTAAGTTCCTAAGCTTAGGTATGTTGCAAGATTTAGGGATTTTCTGGAAAGTGTCTAAACAACAACTATATGATAATACAATGCATGGGGGCTGCAAGGTGTATGATAAGGATAATCGTTTTGTCAATTTAGCACATGAGGATATGTTGCTGGACATATATTGGTTGATCTTAAAGAAGACAAAGCCTTTGCACTATATTCGGATACAAGCTTTGAGAAAACATTCAAAAGTGACGATATATGTTTAGTATTTCATTATGAACTACTTGCTGAAAAGGGTTTGACTTCCTATATGACAGATGAAGGGAAGGGGAAATTATCATGCAGTGATTCTGATGGCATTCCTCTTAAAGATGAACTAACCAACCTGCCGGAATCTAGCAAGGAAGAAGTTGGGATTTCTAAATCATATGTTACAGCAACTCGATGTTTCAATGATCAATTTCGCAAAACAATTGTTGATTAACTGCATGACAACTCTATCAGACCACTTCCTAAGCCACCTCCTTTACATTTTCCAACATGTTTGATGCTAGGAAAATGCATGTTCCAG

mRNA sequence

ATGAGATCTTTTAATTCGAATGAAGAGACACAAAATTTGACATATTTCAATTACTCATGGGTCAACAGACAACAAGAAAAAAGACAAGAAGCAAGAACTAAAAATTATAACAAAGAAGCTCCCTCCGATGAGCCCAATTCTATTCTTCGATATTGGAGTCAGCAGTTCTTGAAGCTGGGAATTAGTGGGGTTAGAAATCGGGACAAATTGTTGAAGAAATCAAGATGAAGGGAAGGGGAAATTATCATGCAGTGATTCTGATGGCATTCCTCTTAAAGATGAACTAACCAACCTGCCGGAATCTAGCAAGGAAGAAGTTGGGATTTCTAAATCATATGTTACAGCAACTCGATGTTTCAATGATCAATTTCGCAAAACAATTGTTGATTAACTGCATGACAACTCTATCAGACCACTTCCTAAGCCACCTCCTTTACATTTTCCAACATGTTTGATGCTAGGAAAATGCATGTTCCAG

Coding sequence (CDS)

ATGAGATCTTTTAATTCGAATGAAGAGACACAAAATTTGACATATTTCAATTACTCATGGGTCAACAGACAACAAGAAAAAAGACAAGAAGCAAGAACTAAAAATTATAACAAAGAAGCTCCCTCCGATGAGCCCAATTCTATTCTTCGATATTGGAGTCAGCAGTTCTTGAAGCTGGGAATTAGTGGGGTTAGAAATCGGGACAAATTGTTGAAGAAATCAAGATGA

Protein sequence

MRSFNSNEETQNLTYFNYSWVNRQQEKRQEARTKNYNKEAPSDEPNSILRYWSQQFLKLGISGVRNRDKLLKKSR
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo15234.1Spo15234.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo15234.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15234.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15234.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15234.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019482 beta-alanine metabolic process
biological_process GO:0009698 phenylpropanoid metabolic process
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0006550 isoleucine catabolic process
biological_process GO:0006552 leucine catabolic process
biological_process GO:0009733 response to auxin
biological_process GO:0009409 response to cold
biological_process GO:0006574 valine catabolic process
biological_process GO:0016123 xanthophyll biosynthetic process
biological_process GO:0016119 carotene metabolic process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0000785 chromatin
cellular_component GO:0009507 chloroplast
cellular_component GO:0005777 peroxisome
cellular_component GO:0016020 membrane
molecular_function GO:0010291 carotene beta-ring hydroxylase activity
molecular_function GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
RNA-Seq Expression