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Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTTAAAACAAGTACTTCAACCTCAACTCAGATCAGAAAACTATGTACAGTTCATTAACCTTGCAGTTTCTGTATCTGCAGACTACCACAGGTACTGCACCAAAAAATGGCCGAACTTCGTTGATGCAAAAATTTAAGGTCAATAAAGCTCCTAAATTTGACTTACATAGAAGAAAATCAACAAGCTTTCTTGCTCTATCCAATAAGGGAATTGACCTCCTTGCTGAACTACAAGTCCAACAAGTCATTGAGAGACAGTCTAAGGGTGTGATTCCCAAAAAACAGACCCGTTTAGATCCTACCCTTCTTAGAGAGGCCTACAACATCTGCAGAAAAATCTGTCGGGATTCTACAAGCTATTATCTGGGTATATAGTTTCATCACCTTTTTACATTTCTTATGATTCTTAGTACTCAGCTGCAGACCTGTAACTCAGTTCATGCCGTTTTGTTTTGAATCTTGGTACAGGAAGTTTGCTGTTGACTGAAGAAAGGAAGAAAGCAATATGGGCTATATATGGTGCAGTCTCTCACTCTCCCTAAATCTAATTCCTTTCAACTGAAGCTAACCCTGGTCTAGCAAGATTTTAAGACCGTCTTACACAAGATTTTAAGACCATCTTACACAAGATTTTACTGATAATACTATGCTGCCCTGGTTGACAGCTTGGACTCAGAGGATTGATGAGATAGTGGATGGTCCAAATTCCCGTCTCACGGACTCAACTGTGTTGGATAGCTGGGAAAAGAGGCTTGAGGACGTCTTTGATGGACGCCCTCATGACAAAATTGATGCTGCCTTGGCTGAAACTGTCCAACGGTTTCCCCTTGACATCACGGTACGTTTCACCTAGCTACTCCAGTTATCTCCTTAGATTTCCTGTTAGTTTTGCTACACTTATCTTACTGTTAGAATATGCCTTGAATCAGTCAAACCCCTTACTGCAACGCCCCAACACAGGGATCACTTTACGTTATCTGTTATTGTACACTAGCTTGAACTGTATTGCTACTATGTAGCAGGAACAGTTGGCTTAATGACAGTTCCAATAGCAGGAATTTCACCACATTCTGTAAGTTCCACAGAAAGCATTTATGAAGCCGCTCTTTCCTTGGGTACCGCACTCCAACTGAATAACATCCTAAGAGATGTAGCAGAAGAGTAAGCTTTCTCTAAACTACTGTAAGGAACTTTGACCTGTGTTTGTGTTCATCCAAACTAACAGTGCCTATTTTAACAATGCAGTGCTTTAGTGGGGAGAGTGTACCTTCCACAAGACGAGCTCAGAGAGTTTGGACTCACAGACAGGGACATCTTTTCAAGGAATGTATCAGAAAGATGGCGAGAGTTCACGAAGAAGCAGATAGAGAGGGCAAGATACTATTATGATCTAGCAGAACAAGGTGTTTCTCAGCTAAACAGCGCTAGTAGGTGGCCGGTATGCAACTTAACAAACTTCTAAATAGTTATGAATTTTTGTGGATGTTATCAACCTGATCAAAAGCCGGGCCTTAAAATATGTCCATTGTGTCGGGTCGGGGCAAGCTTTGGGTTGTTTTGTGTGTCCAAAACCCGCTATTTCAGGCCAAAGTAGCGGCTTTTAGGCCATTTTCGGACCGGGGCTAAAAATTATGTCCAAAACCCGCTAATTTTCGGGCCAAGGCTAAAAATCATGTCCAAAACCCGTTAAATTTCGGGCCGGGCTCATGTTGATCAGCTCTAGAATGTTCTAGTTGCTTTGAATGGAAATTGAGTGTTCTTCAATCTGATGAATCTAGGTGTGGGCGTCATTGATGCTGTATCGGACAATCTTGGACAAGATAGAAAGAAACAACTACGACAACTTAACAAAGCGAGCAAGATTAGGGAATGCTGAGAAGCTTATGTTGCTGCCACTAGCTTATGCCAAAGCCACAGGGTGGTAGTACTAGTACCCAAGAACAGAACCAGTAGATTTCACTAATCCACCAATAGAAACACTGAAATACTGAATTATATTCAGTAAATAGAGTGCATTAGTGCTAAATACTGATTATGTTGTTCATAAGAAAATTTTCATGGTCGACTCTTTGATCATGGTAACAACTAGTTGCAAATATGATATATCATAATCACTTTAAAACAAGTACTTCAACCTCAACTCAGATCAGAAAACTATGTACAGTTCATTAACCTTGCAGTTTCTGTATCTGCAGACTACCACAGGTACTGCACCAAAAAATGGCCGAACTTCGTTGATGCAAAAATTTAAGGTCAATAAAGCTCCTAAATTTGACTTACATAGAAGAAAATCAACAAGCTTTCTTGCTCTATCCAATAAGGGAATTGACCTCCTTGCTGAACTACAAGTCCAACAAGTCATTGAGAGACAGTCTAAGGGTGTGATTCCCAAAAAACAGACCCGTTTAGATCCTACCCTTCTTAGAGAGGCCTACAACATCTGCAGAAAAATCTGTCGGGATTCTACAAGCTATTATCTGGGAAGTTTGCTGTTGACTGAAGAAAGGAAGAAAGCAATATGGGCTATATATGCTTGGACTCAGAGGATTGATGAGATAGTGGATGGTCCAAATTCCCGTCTCACGGACTCAACTGTGTTGGATAGCTGGGAAAAGAGGCTTGAGGACGTCTTTGATGGACGCCCTCATGACAAAATTGATGCTGCCTTGGCTGAAACTGTCCAACGGTTTCCCCTTGACATCACGCTTGAACTGTATTGCTACTATGTAGCAGGAACAGTTGGCTTAATGACAGTTCCAATAGCAGGAATTTCACCACATTCTGTAAGTTCCACAGAAAGCATTTATGAAGCCGCTCTTTCCTTGGGTACCGCACTCCAACTGAATAACATCCTAAGAGATGTAGCAGAAGATGCTTTAGTGGGGAGAGTGTACCTTCCACAAGACGAGCTCAGAGAGTTTGGACTCACAGACAGGGACATCTTTTCAAGGAATGTATCAGAAAGATGGCGAGAGTTCACGAAGAAGCAGATAGAGAGGGCAAGATACTATTATGATCTAGCAGAACAAGGTGTTTCTCAGCTAAACAGCGCTAGTAGGTGGCCGGTGTGGGCGTCATTGATGCTGTATCGGACAATCTTGGACAAGATAGAAAGAAACAACTACGACAACTTAACAAAGCGAGCAAGATTAGGGAATGCTGAGAAGCTTATGTTGCTGCCACTAGCTTATGCCAAAGCCACAGGGTGGTAGTACTAGTACCCAAGAACAGAACCAGTAGATTTCACTAATCCACCAATAGAAACACTGAAATACTGAATTATATTCAGTAAATAGAGTGCATTAGTGCTAAATACTGATTATGTTGTTCATAAGAAAATTTTCATGGTCGACTCTTTGATCATGGTAACAACTAGTTGCAAATATGATATATCATAATCA ATGTACAGTTCATTAACCTTGCAGTTTCTGTATCTGCAGACTACCACAGGTACTGCACCAAAAAATGGCCGAACTTCGTTGATGCAAAAATTTAAGGTCAATAAAGCTCCTAAATTTGACTTACATAGAAGAAAATCAACAAGCTTTCTTGCTCTATCCAATAAGGGAATTGACCTCCTTGCTGAACTACAAGTCCAACAAGTCATTGAGAGACAGTCTAAGGGTGTGATTCCCAAAAAACAGACCCGTTTAGATCCTACCCTTCTTAGAGAGGCCTACAACATCTGCAGAAAAATCTGTCGGGATTCTACAAGCTATTATCTGGGAAGTTTGCTGTTGACTGAAGAAAGGAAGAAAGCAATATGGGCTATATATGCTTGGACTCAGAGGATTGATGAGATAGTGGATGGTCCAAATTCCCGTCTCACGGACTCAACTGTGTTGGATAGCTGGGAAAAGAGGCTTGAGGACGTCTTTGATGGACGCCCTCATGACAAAATTGATGCTGCCTTGGCTGAAACTGTCCAACGGTTTCCCCTTGACATCACGCTTGAACTGTATTGCTACTATGTAGCAGGAACAGTTGGCTTAATGACAGTTCCAATAGCAGGAATTTCACCACATTCTGTAAGTTCCACAGAAAGCATTTATGAAGCCGCTCTTTCCTTGGGTACCGCACTCCAACTGAATAACATCCTAAGAGATGTAGCAGAAGATGCTTTAGTGGGGAGAGTGTACCTTCCACAAGACGAGCTCAGAGAGTTTGGACTCACAGACAGGGACATCTTTTCAAGGAATGTATCAGAAAGATGGCGAGAGTTCACGAAGAAGCAGATAGAGAGGGCAAGATACTATTATGATCTAGCAGAACAAGGTGTTTCTCAGCTAAACAGCGCTAGTAGGTGGCCGGTGTGGGCGTCATTGATGCTGTATCGGACAATCTTGGACAAGATAGAAAGAAACAACTACGACAACTTAACAAAGCGAGCAAGATTAGGGAATGCTGAGAAGCTTATGTTGCTGCCACTAGCTTATGCCAAAGCCACAGGGTGGTAG MYSSLTLQFLYLQTTTGTAPKNGRTSLMQKFKVNKAPKFDLHRRKSTSFLALSNKGIDLLAELQVQQVIERQSKGVIPKKQTRLDPTLLREAYNICRKICRDSTSYYLGSLLLTEERKKAIWAIYAWTQRIDEIVDGPNSRLTDSTVLDSWEKRLEDVFDGRPHDKIDAALAETVQRFPLDITLELYCYYVAGTVGLMTVPIAGISPHSVSSTESIYEAALSLGTALQLNNILRDVAEDALVGRVYLPQDELREFGLTDRDIFSRNVSERWREFTKKQIERARYYYDLAEQGVSQLNSASRWPVWASLMLYRTILDKIERNNYDNLTKRARLGNAEKLMLLPLAYAKATGW Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo15086.1 vs. NCBI nr
Match: gi|902232555|gb|KNA22678.1| (hypothetical protein SOVF_031960, partial [Spinacia oleracea]) HSP 1 Score: 599.7 bits (1545), Expect = 3.200e-168 Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1
BLAST of Spo15086.1 vs. NCBI nr
Match: gi|731325414|ref|XP_010673504.1| (PREDICTED: phytoene synthase 2, chloroplastic-like isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 434.5 bits (1116), Expect = 1.800e-118 Identity = 220/331 (66.47%), Postives = 258/331 (77.95%), Query Frame = 1
BLAST of Spo15086.1 vs. NCBI nr
Match: gi|731325412|ref|XP_010673503.1| (PREDICTED: phytoene synthase 2, chloroplastic-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 429.5 bits (1103), Expect = 5.700e-117 Identity = 229/375 (61.07%), Postives = 273/375 (72.80%), Query Frame = 1
BLAST of Spo15086.1 vs. NCBI nr
Match: gi|902236311|gb|KNA24327.1| (hypothetical protein SOVF_016830 isoform A [Spinacia oleracea]) HSP 1 Score: 404.4 bits (1038), Expect = 2.000e-109 Identity = 223/374 (59.63%), Postives = 262/374 (70.05%), Query Frame = 1
BLAST of Spo15086.1 vs. NCBI nr
Match: gi|731325416|ref|XP_010673505.1| (PREDICTED: phytoene synthase 2, chloroplastic-like isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 398.3 bits (1022), Expect = 1.400e-107 Identity = 210/331 (63.44%), Postives = 243/331 (73.41%), Query Frame = 1
BLAST of Spo15086.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RTA2_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_031960 PE=4 SV=1) HSP 1 Score: 599.7 bits (1545), Expect = 2.200e-168 Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1
BLAST of Spo15086.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CQQ3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g071250 PE=4 SV=1) HSP 1 Score: 434.5 bits (1116), Expect = 1.200e-118 Identity = 220/331 (66.47%), Postives = 258/331 (77.95%), Query Frame = 1
BLAST of Spo15086.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FET7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g071230 PE=4 SV=1) HSP 1 Score: 429.5 bits (1103), Expect = 4.000e-117 Identity = 229/375 (61.07%), Postives = 273/375 (72.80%), Query Frame = 1
BLAST of Spo15086.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RZN2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_016830 PE=4 SV=1) HSP 1 Score: 404.4 bits (1038), Expect = 1.400e-109 Identity = 223/374 (59.63%), Postives = 262/374 (70.05%), Query Frame = 1
BLAST of Spo15086.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CLG8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g071240 PE=4 SV=1) HSP 1 Score: 398.3 bits (1022), Expect = 9.800e-108 Identity = 210/331 (63.44%), Postives = 243/331 (73.41%), Query Frame = 1
BLAST of Spo15086.1 vs. ExPASy Swiss-Prot
Match: PSY_MAIZE (Phytoene synthase, chloroplastic OS=Zea mays GN=Y1 PE=3 SV=1) HSP 1 Score: 327.8 bits (839), Expect = 1.500e-88 Identity = 158/284 (55.63%), Postives = 210/284 (73.94%), Query Frame = 1
BLAST of Spo15086.1 vs. ExPASy Swiss-Prot
Match: PSY_ARATH (Phytoene synthase, chloroplastic OS=Arabidopsis thaliana GN=PSY1 PE=2 SV=2) HSP 1 Score: 325.1 bits (832), Expect = 9.500e-88 Identity = 174/342 (50.88%), Postives = 232/342 (67.84%), Query Frame = 1
BLAST of Spo15086.1 vs. ExPASy Swiss-Prot
Match: PSY_CUCME (Phytoene synthase, chloroplastic OS=Cucumis melo GN=PSY PE=2 SV=1) HSP 1 Score: 321.6 bits (823), Expect = 1.000e-86 Identity = 160/287 (55.75%), Postives = 208/287 (72.47%), Query Frame = 1
BLAST of Spo15086.1 vs. ExPASy Swiss-Prot
Match: PSY_CAPAN (Bifunctional 15-cis-phytoene synthase, chromoplastic OS=Capsicum annuum GN=PSY1 PE=1 SV=1) HSP 1 Score: 321.6 bits (823), Expect = 1.000e-86 Identity = 161/285 (56.49%), Postives = 209/285 (73.33%), Query Frame = 1
BLAST of Spo15086.1 vs. ExPASy Swiss-Prot
Match: PSY2_SOLLC (Phytoene synthase 2, chloroplastic (Fragment) OS=Solanum lycopersicum GN=PSY2 PE=2 SV=1) HSP 1 Score: 318.9 bits (816), Expect = 6.800e-86 Identity = 158/285 (55.44%), Postives = 210/285 (73.68%), Query Frame = 1
BLAST of Spo15086.1 vs. TAIR (Arabidopsis)
Match: AT5G17230.3 (PHYTOENE SYNTHASE) HSP 1 Score: 315.1 bits (806), Expect = 5.500e-86 Identity = 174/357 (48.74%), Postives = 232/357 (64.99%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo15086.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo15086.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo15086.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo15086.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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