Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATTTTTTTGACGGGTGATTTGTAATCTAAATTTTGCGGAAAGAATAAATTCAATTTTTTTAAGGAAAAAGAAAGAATTAATTTCTGAAGAAAAAAAGAAAAAAAAGTAAGCAAAATGAATTTTCTCTCTCCTCAAACTCCAACTCGCAGCTGCTCTGCAATTCTGCATCTTCGTCCTCCTCTTAAAACCCTAACTACTCTCCTACAACAAAACCACCATCATCTACTCGTATAACCACCGCTAATCGGTGGGGCCTCTTTCAACCACCTCTCCTCCACCGCCGCTACTATTCTCGGGTATGTACTTTTTCCGCTTATCTATTTTGTAATCGATTGTTTTGGATTTTATTTGTATTTACAGATCCAATTATTCTTAAGTTTCATGTGTGGATGATGGATTTTTGCTATGTGAATCCGATGTTTCAAATTGTTTGATTTTTGCTGGCTTTGTTTAGGTGTTGTTTTATGTCTAATCAAGTAATCAGTCGACACCCACTCATAATTATATATTATCCTTTTCTCCCTCCTGAGCTGGCTCGGGGACAGACCTGGTTGTGTTGTGCAATGGTGTGAGTTTTAAGGGCCTTGTCCCTTCGTATAAAACGATCAACGGTCCGGTTTTAGCTACTCCGTACTATTTAGTTGAGTTTAGCATGTATGAACGACATCTACGTCCAACATTTTCCATAAAAGAAAAGTTTGCACCGTGAGGGAGGTTACAACTTTTCATAGGTATTTATGTATAATTATTGACCGCATCATGAAGGTAATGTGAAAAATTTAGGAATTCATTTGTTTTCTTGGAGGATTTCCTTTTTGTTTTGAAGGCTTAGCAAGTTAGTTGATCTCTCAATTTCGGCTATGCGTGGTCATAAGCCTTGTGCAGAGCTCTACAGCTCTCTACAGCTCTCTTGGTTTATATGATAAGGCTTTGAAATTGTTGTAAATTGTTGTTGTTGTTGCTGTTGTGTTGTTTTAGTGTCCATTAGACAGCTATGGTGTTGTCAAGACTCAAGAGTCATGTACTGCATTCCTCTTCCTTTTTTGTCTCTTGAATTTGGTTGCTACCTCAACCATGCATTTTATTCATAGATTTTAATATATTTGCTTTATCTTTCTGTTATGATGCGGTTGGTTGCTGGGCTTTGTTGTTATTGGTTTTTTACAACTTTGGAAGGGGTGGGGTACACAAGAAGCTAGGAATTGGTGGTAACTTTGTATGTCATGTGTTTCTATTCAGCAAAACTGTATGCATTTCATGTCTTTAAATAATGTGGCTTTTTAGTCAGGCACAACTTCCACCAACGATCAACATTTCGTTGATTCTAGAATTGAATCGCATATGCAAACCTTTTGGGCAGTGCTGTACTTCCGTGTGCACATTTTTTGTTGTTAACGTTGGGGTCATGATTTGAACAATATATTGCAGTTTAGGTAATCCAGGAAATGGAAGGAATTCCAATTGAATCAAAAAAGGAAACAGCTTCAGTTTCTGCTTCACAAGTTCAGTCTGAAGACCATGGTAAGACCATGTTCCTGTACTGTTACTCATAAAGGCTTTTTAATTTTTAGCTAGGGATCTTAATAAGCTTGTATCATTTTGCTAGAAATCAAAGCTCGGGTGGATGCTGTTTGGCAGCAGATGAATAAAGGGGTTTCTGTGAAGACTATGAACTCCATTGTGAACAAAAGTAGTTCGACGGGAACTAAAACTATGCAGACGGACAAGGCTTCCAATGTATGGTGTTTTTGAAATGCTGCTCTTAAAATGTTTAGGGGAAAAAGTGTTTATATCCTGATAATTTTGGTCCTCTTTGCAGAACTGGATGTCATTATTGGGTTTGGGATCAAAGAAAACAAAACCTACTGTGGCATCAACGAAAGGGAAGAACTCCTCTCCTGCACAAAATGGAACCAGTGATGAGGCCAGGAAGCTTGCTGCTGCTGCCCTTGCAGCAGCCAGAGATGCTGCCACTGCATCTGCCTCTGCAATGAACAGGGGGAAAATTGAGGTATACTGATAATTGGATTATTCTTTGTTTTCCTCGTGTTCCTAGTTTATGTATCTTTTTTCTTTTTTGTTTTTTTTATGTAATCTTCTGGCTCTTATTTTTTTCATGGAGAGAGATGAATCTACTTGCTCTTCATGCTTGAAATTAACTGCTTTTTTCTCCGAAGTCTTATATCCTCTATCCTGATTCCTGACTGTTGAGAACCTCTGGACCATGAGTTTATTGAATGATAAGAGACTGTTGGTAGCATGGTAGGGTTAAGTTGTGAAGTTATTGTTCTGTTACAGGTGACTGAGGTTCGAGACTTTGCTGGTGAAGAGATTGAAGTGAAGAAGCTAATTGACCCGAGTTCAAAAGAGGCAGCTGAAAGGGCAGGGCCATCATCTGCCGTGGATTCTGTTCTGGAACAAATAAAGAAGAAGCCAAAGCTGAATCTTCTTGACAAGACCAAAAAGGACTGGGGAGAATTCAAAGGGGAAAATAAAGACTATGAGGAGGAATTAGATGCTTACAAAAAGAGTTCAAATCAATATTTAGACAAGGTCTCATTTCTAAGTAGGGCAGATTACCGGGAATTTGAGAGAGAAAGAGATGTAAGACTTGCACAGCAGGCAAAGAGGAAGCCAGATACGTGAGAAATCACTTTTTTATATCTTCGCATGCACTTTACGTAAGTGTATGCTATTGCGAGACAACAAAGGCGGATGTCCTACTCCTAATTGATCTAGGATGTCATTTTGTCTTATTGAAGAGGTCTTGATAATCTGTCTTAGACTTTGTATCAATTTCCAATTCTTAGGCTGTCTGCTCATGGGTTACCTTATTTTTGCTTGTCCTAGCAGCATAAGAAAGTATACCAATCGCTAACCAAAGTGATCGTTCCGCAAAGCAAACTAAATTTCCCAGTGTGTGCCCTAATGAAATAGGCCTTTGTGGGATTGAGCCTTGAGGGACTGATCTTTGGCTTTTTCCAACTCATATGAAAATACTTTTAGATAAATAAATACTCCGTAATAGGATGTACGAAATTTTTATACTCACATTTTAAAATGAAAAATTAAAAAATATCTATCTATCTGTTTA TATTTTTTTGACGGGTGATTTGTAATCTAAATTTTGCGGAAAGAATAAATTCAATTTTTTTAAGGAAAAAGAAAGAATTAATTTCTGAAGAAAAAAAGAAAAAAAAGTAAGCAAAATGAATTTTCTCTCTCCTCAAACTCCAACTCGCAGCTGCTCTGCAATTCTGCATCTTCGTCCTCCTCTTAAAACCCTAACTACTCTCCTACAACAAAACCACCATCATCTACTCGTATAACCACCGCTAATCGGTGGGGCCTCTTTCAACCACCTCTCCTCCACCGCCGCTACTATTCTCGGTTTAGGTAATCCAGGAAATGGAAGGAATTCCAATTGAATCAAAAAAGGAAACAGCTTCAGTTTCTGCTTCACAAGTTCAGTCTGAAGACCATGAAATCAAAGCTCGGGTGGATGCTGTTTGGCAGCAGATGAATAAAGGGGTTTCTGTGAAGACTATGAACTCCATTGTGAACAAAAGTAGTTCGACGGGAACTAAAACTATGCAGACGGACAAGGCTTCCAATAACTGGATGTCATTATTGGGTTTGGGATCAAAGAAAACAAAACCTACTGTGGCATCAACGAAAGGGAAGAACTCCTCTCCTGCACAAAATGGAACCAGTGATGAGGCCAGGAAGCTTGCTGCTGCTGCCCTTGCAGCAGCCAGAGATGCTGCCACTGCATCTGCCTCTGCAATGAACAGGGGGAAAATTGAGGTGACTGAGGTTCGAGACTTTGCTGGTGAAGAGATTGAAGTGAAGAAGCTAATTGACCCGAGTTCAAAAGAGGCAGCTGAAAGGGCAGGGCCATCATCTGCCGTGGATTCTGTTCTGGAACAAATAAAGAAGAAGCCAAAGCTGAATCTTCTTGACAAGACCAAAAAGGACTGGGGAGAATTCAAAGGGGAAAATAAAGACTATGAGGAGGAATTAGATGCTTACAAAAAGAGTTCAAATCAATATTTAGACAAGGTCTCATTTCTAAGTAGGGCAGATTACCGGGAATTTGAGAGAGAAAGAGATGTAAGACTTGCACAGCAGGCAAAGAGGAAGCCAGATACGTGAGAAATCACTTTTTTATATCTTCGCATGCACTTTACGTAAGTGTATGCTATTGCGAGACAACAAAGGCGGATGTCCTACTCCTAATTGATCTAGGATGTCATTTTGTCTTATTGAAGAGGTCTTGATAATCTGTCTTAGACTTTGTATCAATTTCCAATTCTTAGGCTGTCTGCTCATGGGTTACCTTATTTTTGCTTGTCCTAGCAGCATAAGAAAGTATACCAATCGCTAACCAAAGTGATCGTTCCGCAAAGCAAACTAAATTTCCCAGTGTGTGCCCTAATGAAATAGGCCTTTGTGGGATTGAGCCTTGAGGGACTGATCTTTGGCTTTTTCCAACTCATATGAAAATACTTTTAGATAAATAAATACTCCGTAATAGGATGTACGAAATTTTTATACTCACATTTTAAAATGAAAAATTAAAAAATATCTATCTATCTGTTTA ATGGAAGGAATTCCAATTGAATCAAAAAAGGAAACAGCTTCAGTTTCTGCTTCACAAGTTCAGTCTGAAGACCATGAAATCAAAGCTCGGGTGGATGCTGTTTGGCAGCAGATGAATAAAGGGGTTTCTGTGAAGACTATGAACTCCATTGTGAACAAAAGTAGTTCGACGGGAACTAAAACTATGCAGACGGACAAGGCTTCCAATAACTGGATGTCATTATTGGGTTTGGGATCAAAGAAAACAAAACCTACTGTGGCATCAACGAAAGGGAAGAACTCCTCTCCTGCACAAAATGGAACCAGTGATGAGGCCAGGAAGCTTGCTGCTGCTGCCCTTGCAGCAGCCAGAGATGCTGCCACTGCATCTGCCTCTGCAATGAACAGGGGGAAAATTGAGGTGACTGAGGTTCGAGACTTTGCTGGTGAAGAGATTGAAGTGAAGAAGCTAATTGACCCGAGTTCAAAAGAGGCAGCTGAAAGGGCAGGGCCATCATCTGCCGTGGATTCTGTTCTGGAACAAATAAAGAAGAAGCCAAAGCTGAATCTTCTTGACAAGACCAAAAAGGACTGGGGAGAATTCAAAGGGGAAAATAAAGACTATGAGGAGGAATTAGATGCTTACAAAAAGAGTTCAAATCAATATTTAGACAAGGTCTCATTTCTAAGTAGGGCAGATTACCGGGAATTTGAGAGAGAAAGAGATGTAAGACTTGCACAGCAGGCAAAGAGGAAGCCAGATACGTGA MEGIPIESKKETASVSASQVQSEDHEIKARVDAVWQQMNKGVSVKTMNSIVNKSSSTGTKTMQTDKASNNWMSLLGLGSKKTKPTVASTKGKNSSPAQNGTSDEARKLAAAALAAARDAATASASAMNRGKIEVTEVRDFAGEEIEVKKLIDPSSKEAAERAGPSSAVDSVLEQIKKKPKLNLLDKTKKDWGEFKGENKDYEEELDAYKKSSNQYLDKVSFLSRADYREFERERDVRLAQQAKRKPDT Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo15014.1 vs. NCBI nr
Match: gi|902136796|gb|KNA04476.1| (hypothetical protein SOVF_199140 [Spinacia oleracea]) HSP 1 Score: 449.9 bits (1156), Expect = 2.900e-123 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1
BLAST of Spo15014.1 vs. NCBI nr
Match: gi|731362685|ref|XP_010693016.1| (PREDICTED: craniofacial development protein 1 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 351.7 bits (901), Expect = 1.100e-93 Identity = 199/251 (79.28%), Postives = 218/251 (86.85%), Query Frame = 1
BLAST of Spo15014.1 vs. NCBI nr
Match: gi|731362683|ref|XP_010693015.1| (PREDICTED: craniofacial development protein 1 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 351.7 bits (901), Expect = 1.100e-93 Identity = 199/251 (79.28%), Postives = 218/251 (86.85%), Query Frame = 1
BLAST of Spo15014.1 vs. NCBI nr
Match: gi|297736769|emb|CBI25970.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 270.4 bits (690), Expect = 3.100e-69 Identity = 158/248 (63.71%), Postives = 193/248 (77.82%), Query Frame = 1
BLAST of Spo15014.1 vs. NCBI nr
Match: gi|225432108|ref|XP_002262955.1| (PREDICTED: craniofacial development protein 1 [Vitis vinifera]) HSP 1 Score: 270.4 bits (690), Expect = 3.100e-69 Identity = 158/248 (63.71%), Postives = 193/248 (77.82%), Query Frame = 1
BLAST of Spo15014.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QD49_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_199140 PE=4 SV=1) HSP 1 Score: 449.9 bits (1156), Expect = 2.000e-123 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1
BLAST of Spo15014.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BDI7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g045360 PE=4 SV=1) HSP 1 Score: 351.7 bits (901), Expect = 7.400e-94 Identity = 199/251 (79.28%), Postives = 218/251 (86.85%), Query Frame = 1
BLAST of Spo15014.1 vs. UniProtKB/TrEMBL
Match: D7T649_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00360 PE=4 SV=1) HSP 1 Score: 270.4 bits (690), Expect = 2.200e-69 Identity = 158/248 (63.71%), Postives = 193/248 (77.82%), Query Frame = 1
BLAST of Spo15014.1 vs. UniProtKB/TrEMBL
Match: A0A068UTS4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035277001 PE=4 SV=1) HSP 1 Score: 261.2 bits (666), Expect = 1.300e-66 Identity = 159/254 (62.60%), Postives = 188/254 (74.02%), Query Frame = 1
BLAST of Spo15014.1 vs. UniProtKB/TrEMBL
Match: A0A068VPX8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00004282001 PE=4 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 1.100e-65 Identity = 156/255 (61.18%), Postives = 188/255 (73.73%), Query Frame = 1
BLAST of Spo15014.1 vs. ExPASy Swiss-Prot
Match: CFDP1_CHICK (Craniofacial development protein 1 OS=Gallus gallus GN=CFDP1 PE=2 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 9.600e-10 Identity = 64/209 (30.62%), Postives = 100/209 (47.85%), Query Frame = 1
BLAST of Spo15014.1 vs. ExPASy Swiss-Prot
Match: CFDP1_TRAJA (Craniofacial development protein 1 OS=Tragulus javanicus GN=CFDP1 PE=2 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.600e-9 Identity = 68/226 (30.09%), Postives = 111/226 (49.12%), Query Frame = 1
BLAST of Spo15014.1 vs. ExPASy Swiss-Prot
Match: CFDP1_RAT (Craniofacial development protein 1 OS=Rattus norvegicus GN=Cfdp1 PE=1 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 4.700e-9 Identity = 65/215 (30.23%), Postives = 104/215 (48.37%), Query Frame = 1
BLAST of Spo15014.1 vs. ExPASy Swiss-Prot
Match: CFDP1_CAMDR (Craniofacial development protein 1 OS=Camelus dromedarius GN=CFDP1 PE=2 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 4.000e-8 Identity = 72/271 (26.57%), Postives = 118/271 (43.54%), Query Frame = 1
BLAST of Spo15014.1 vs. ExPASy Swiss-Prot
Match: CFDP1_MOUSE (Craniofacial development protein 1 OS=Mus musculus GN=Cfdp1 PE=1 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 5.200e-8 Identity = 64/215 (29.77%), Postives = 101/215 (46.98%), Query Frame = 1
BLAST of Spo15014.1 vs. TAIR (Arabidopsis)
Match: AT5G30490.1 (Craniofacial development protein 1/Bucentaur (InterPro:IPR011421)) HSP 1 Score: 196.4 bits (498), Expect = 2.000e-50 Identity = 119/229 (51.97%), Postives = 157/229 (68.56%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo15014.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo15014.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo15014.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo15014.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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