Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGAACCCTAGACGAGCAAGAAACCACCATCGTGTTCGAGAAACTCTTCAAGTTCGTCGGCAACAACCTCAAGAACATCGTCGACAATCCATCCTACGAAGGGCCCGCACAAGACCCGCTCCCAGGCCGGTACTGCTTCCGCCTCCAGAAGAATCGTGTGTACTACGCTAGTGAATCACTCGTGAAACGCGCAACAAACGTTTCGAAGGAGCTGCTGGTTTCACTGGGTGTACAAGTGGGGAAGTTCACCCACAGTGGGAACTTCCATCTGACAATTCACGCTCTATCTCTCTTGGCCCCGAATGCGAAGCACAAGGTATGGCTTAAACCGACCTCAGAGATGTCGTTTTTGTATGGGAATGCTGTGTTGAAGGCTCATTTAGGGAGGATTACTGAAGATATAAATGGTGGTGATGGTATTGTTGTTTATTCAATGTCTGATGTTCCTTTGGGTTTCGGAATCGCCACCAAATCGACCAAGGATGTTCGTAAATCAGACCCGCAAACTATGGTGGTCATTCATCAAGGTGATATTGGTGAGTATTTGAGGTTGGAGGATGAGCTTTGATTTGTTAGTGAAAGATGAATACAATGTTAAGTTATAATGTTAATGGCCTTGTTGTTTCGAAGCTTCGATTTTGAATTTTTATACAATGTTAAGTTACTGAAGTTTCAAGAGTTCGCTTGTTTGATGGATTTGGTGTTGGTGCTGGATATACAGTAATGGTGTAAAAATGGTATTTTTATGTCATGATTTGGGGTGCCACAGTGATCATTCTCACATTTTCTCCTCAGCTGATATGCAAAATCAAGGGGAAGATCACCTCAGATATGCATATCTCTAGTAACTTAGTAAGAGAATGCTGGGTTCACTATGGCGAACATTATTAATAGTGGTAGTTGATCTGAGGCTTGTACGGATTCAAAACAATGGGGATAAAACATGCGCGATCTCTAAGAAAATTTACTATTTTACTATCACATGTACGGATTCAAAACAATGGGGATAAAATATGCATGATTTCTATGAAATATTATTATTTTACTTCTAGTTTTAAAAAAGAGATATACTTTGACCGACATTTAGTTTTAGGAGAGTGAGTTGAATTTATTAAAATAAGATGAAAGTCGGATAGTGGATGAATTATTTATTACGGAGTATAATATAAGGATGATGCGAGTAAGTGCAGCGACCACGAGAAAGAGAGAAATATTAGTAGAAAAGCTTATCTCTTTTTAAAATACGGCCGTTTAAGGAAATGTATCTCTTTTTTAGTTTGTATTTTAAAATAAAGATGGAGTACCATTATATATACGGATTCAAAACAAAGGGATAGAACGTGCACGATCTCTATGAAAATTTACTATTTTACCCTAACATATACGTAATATGAAATAATTAGGGGTGAACGGAAGAGAGTAAAAACAAAAAAAAAAAAAAAGTTACAGACCTTCCATCTAGCCAAGAAGGAGGGGTGCTACCAGGGAACCAAATAGGCCTCTCTGGTTCAGCTGCAGCTGCGGAGACAGAGAAGGAGTTTGAGGAAACGGGTGTTCTGTATTTGCTGCTGTCTCTCAACTTCTTTCCTCCTAGGAATGATGCTCTTGTTGCTCCCAATACATTTCCTTTCTTCTGTGAACTGTTTCATTTTTTTTAA ATGAGAACCCTAGACGAGCAAGAAACCACCATCGTGTTCGAGAAACTCTTCAAGTTCGTCGGCAACAACCTCAAGAACATCGTCGACAATCCATCCTACGAAGGGCCCGCACAAGACCCGCTCCCAGGCCGGTACTGCTTCCGCCTCCAGAAGAATCGTGTGTACTACGCTAGTGAATCACTCGTGAAACGCGCAACAAACGTTTCGAAGGAGCTGCTGGTTTCACTGGGTGTACAAGTGGGGAAGTTCACCCACAGTGGGAACTTCCATCTGACAATTCACGCTCTATCTCTCTTGGCCCCGAATGCGAAGCACAAGGTATGGCTTAAACCGACCTCAGAGATGTCGTTTTTGTATGGGAATGCTGTGTTGAAGGCTCATTTAGGGAGGATTACTGAAGATATAAATGGTGGTGATGGTATTGTTGTTTATTCAATGTCTGATGTTCCTTTGGGTTTCGGAATCGCCACCAAATCGACCAAGGATGTTCGTAAATCAGACCCGCAAACTATGGTGGTCATTCATCAAGGTGATATTGACCTTCCATCTAGCCAAGAAGGAGGGGTGCTACCAGGGAACCAAATAGGCCTCTCTGGTTCAGCTGCAGCTGCGGAGACAGAGAAGGAGTTTGAGGAAACGGGTGTTCTGTATTTGCTGCTGTCTCTCAACTTCTTTCCTCCTAGGAATGATGCTCTTGTTGCTCCCAATACATTTCCTTTCTTCTGTGAACTGTTTCATTTTTTTTAA ATGAGAACCCTAGACGAGCAAGAAACCACCATCGTGTTCGAGAAACTCTTCAAGTTCGTCGGCAACAACCTCAAGAACATCGTCGACAATCCATCCTACGAAGGGCCCGCACAAGACCCGCTCCCAGGCCGGTACTGCTTCCGCCTCCAGAAGAATCGTGTGTACTACGCTAGTGAATCACTCGTGAAACGCGCAACAAACGTTTCGAAGGAGCTGCTGGTTTCACTGGGTGTACAAGTGGGGAAGTTCACCCACAGTGGGAACTTCCATCTGACAATTCACGCTCTATCTCTCTTGGCCCCGAATGCGAAGCACAAGGTATGGCTTAAACCGACCTCAGAGATGTCGTTTTTGTATGGGAATGCTGTGTTGAAGGCTCATTTAGGGAGGATTACTGAAGATATAAATGGTGGTGATGGTATTGTTGTTTATTCAATGTCTGATGTTCCTTTGGGTTTCGGAATCGCCACCAAATCGACCAAGGATGTTCGTAAATCAGACCCGCAAACTATGGTGGTCATTCATCAAGGTGATATTGACCTTCCATCTAGCCAAGAAGGAGGGGTGCTACCAGGGAACCAAATAGGCCTCTCTGGTTCAGCTGCAGCTGCGGAGACAGAGAAGGAGTTTGAGGAAACGGGTGTTCTGTATTTGCTGCTGTCTCTCAACTTCTTTCCTCCTAGGAATGATGCTCTTGTTGCTCCCAATACATTTCCTTTCTTCTGTGAACTGTTTCATTTTTTTTAA MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASESLVKRATNVSKELLVSLGVQVGKFTHSGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYGNAVLKAHLGRITEDINGGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIDLPSSQEGGVLPGNQIGLSGSAAAAETEKEFEETGVLYLLLSLNFFPPRNDALVAPNTFPFFCELFHFF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo14416.1 vs. NCBI nr
Match: gi|902186883|gb|KNA10804.1| (hypothetical protein SOVF_140980 [Spinacia oleracea]) HSP 1 Score: 360.5 bits (924), Expect = 2.300e-96 Identity = 177/179 (98.88%), Postives = 178/179 (99.44%), Query Frame = 1
BLAST of Spo14416.1 vs. NCBI nr
Match: gi|902227647|gb|KNA20771.1| (hypothetical protein SOVF_049390 [Spinacia oleracea]) HSP 1 Score: 359.8 bits (922), Expect = 3.900e-96 Identity = 176/179 (98.32%), Postives = 178/179 (99.44%), Query Frame = 1
BLAST of Spo14416.1 vs. NCBI nr
Match: gi|731314461|ref|XP_010686698.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 334.7 bits (857), Expect = 1.400e-88 Identity = 164/179 (91.62%), Postives = 168/179 (93.85%), Query Frame = 1
BLAST of Spo14416.1 vs. NCBI nr
Match: gi|731314463|ref|XP_010686700.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 334.0 bits (855), Expect = 2.300e-88 Identity = 164/179 (91.62%), Postives = 168/179 (93.85%), Query Frame = 1
BLAST of Spo14416.1 vs. NCBI nr
Match: gi|731314513|ref|XP_010686892.1| (PREDICTED: LOW QUALITY PROTEIN: 60S ribosome subunit biogenesis protein NIP7 homolog [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 332.8 bits (852), Expect = 5.100e-88 Identity = 163/179 (91.06%), Postives = 167/179 (93.30%), Query Frame = 1
BLAST of Spo14416.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QU63_SPIOL (60S ribosome subunit biogenesis protein NIP7 homolog OS=Spinacia oleracea GN=SOVF_140980 PE=3 SV=1) HSP 1 Score: 360.5 bits (924), Expect = 1.600e-96 Identity = 177/179 (98.88%), Postives = 178/179 (99.44%), Query Frame = 1
BLAST of Spo14416.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMM2_SPIOL (60S ribosome subunit biogenesis protein NIP7 homolog OS=Spinacia oleracea GN=SOVF_049390 PE=3 SV=1) HSP 1 Score: 359.8 bits (922), Expect = 2.700e-96 Identity = 176/179 (98.32%), Postives = 178/179 (99.44%), Query Frame = 1
BLAST of Spo14416.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D4Y2_BETVU (60S ribosome subunit biogenesis protein NIP7 homolog OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g014050 PE=3 SV=1) HSP 1 Score: 334.7 bits (857), Expect = 9.400e-89 Identity = 164/179 (91.62%), Postives = 168/179 (93.85%), Query Frame = 1
BLAST of Spo14416.1 vs. UniProtKB/TrEMBL
Match: A0A078F8S2_BRANA (60S ribosome subunit biogenesis protein NIP7 homolog OS=Brassica napus GN=BnaC07g33200D PE=3 SV=1) HSP 1 Score: 281.6 bits (719), Expect = 9.500e-73 Identity = 137/179 (76.54%), Postives = 156/179 (87.15%), Query Frame = 1
BLAST of Spo14416.1 vs. UniProtKB/TrEMBL
Match: A0A0D3DEA0_BRAOL (60S ribosome subunit biogenesis protein NIP7 homolog OS=Brassica oleracea var. oleracea PE=3 SV=1) HSP 1 Score: 281.6 bits (719), Expect = 9.500e-73 Identity = 137/179 (76.54%), Postives = 156/179 (87.15%), Query Frame = 1
BLAST of Spo14416.1 vs. ExPASy Swiss-Prot
Match: NIP7_RAT (60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus GN=Nip7 PE=2 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 7.200e-50 Identity = 99/179 (55.31%), Postives = 125/179 (69.83%), Query Frame = 1
BLAST of Spo14416.1 vs. ExPASy Swiss-Prot
Match: NIP7_HUMAN (60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens GN=NIP7 PE=1 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 9.500e-50 Identity = 98/179 (54.75%), Postives = 125/179 (69.83%), Query Frame = 1
BLAST of Spo14416.1 vs. ExPASy Swiss-Prot
Match: NIP7_PONAB (60S ribosome subunit biogenesis protein NIP7 homolog OS=Pongo abelii GN=NIP7 PE=2 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 9.500e-50 Identity = 98/179 (54.75%), Postives = 125/179 (69.83%), Query Frame = 1
BLAST of Spo14416.1 vs. ExPASy Swiss-Prot
Match: NIP7_MOUSE (60S ribosome subunit biogenesis protein NIP7 homolog OS=Mus musculus GN=Nip7 PE=1 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 1.600e-49 Identity = 98/179 (54.75%), Postives = 125/179 (69.83%), Query Frame = 1
BLAST of Spo14416.1 vs. ExPASy Swiss-Prot
Match: NIP7_PIG (60S ribosome subunit biogenesis protein NIP7 homolog OS=Sus scrofa GN=NIP7 PE=2 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 1.600e-49 Identity = 98/179 (54.75%), Postives = 125/179 (69.83%), Query Frame = 1
BLAST of Spo14416.1 vs. TAIR (Arabidopsis)
Match: AT4G15770.1 (RNA binding) HSP 1 Score: 267.7 bits (683), Expect = 7.200e-72 Identity = 131/179 (73.18%), Postives = 151/179 (84.36%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo14416.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo14416.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo14416.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo14416.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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