Spo13899 (gene)

Overview
NameSpo13899
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00215 : 580651 .. 584150 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAATACGGCATACTCGTTGTAGAACATGGAATCAGAAGTCAGAGCCTAATTTTCTTTTCCCCTTCGTTCTACCAACGAAAACCAACCCCTACTCCCCCATTTTAGATCTGCGAATTCGATCAGTCCCAAACTTTGCAATCCTTTGTTCTCAATCAAAACCCCTAACTTATTTTCCATAATCATCCTCAATATCACCAATTTCTGCTGCTCGCCGAAATTGAATGAAAACCCCTAATTTTCGAAAATTTCAATGGTTGAGTTTCAATAACGTAAATTTCGACATTAAAATCTGTATGATCCATGGAGGTTTTGTACGGAGAGTCCAGTCGCTGAGCTCAAATAACATATCTAACATACAAAGGATGAATCGCAAGCTCAAAGTTAAGTTGAAGAAAATTTTCGATTATTTTTCATCTGGGTGAATTAGGGTTTTTAATTCGATTCAATACATCTAGGATGGTATCTGAAATTGCTTGAATTTATTCTTGTTTCCATTGATAGAAATGTTGAGTTTACCTCTAGATCTGAGAGGAAGGAGGCGGCCCTTGCTACTTTTTAGAAAAACGAGTCGTATTGCTTATAAGGTTTGGCGGTACGCTTCCTTTCATTTTCTTCTTCCTTTGGAGCTTTGAATCAAGAGATTTTTGTAATTCTTTCGGTTCTTTTGTTTGTTCCTCGTAATTGAGTTGTTTATTGTTAGTGTTGAGTTAGGGTTTATGGTTTTAAAATTAACAAAATTTAAGCATAATTCTGGCATTCTAGGTAGTTGATGCATCAAATTGTGAAAACTGATTGTGCAAAATTCGTGGGAGATACTGATCAAAATAAATTGAGCTGAAAAAAAAACCCAAGTCTATACTTACGGTTTGATTAAAAAAAATTGGATTATTTCGGTAGAACAAAGGGGGACGAAATCGATGGATATGAGAGGTTGAATGATGCTTTTAAGATAAAAATCTATCAAAATTGGGCAGCTGAAATTTATCATAAACTAATTGTGAGTTAGGCGGCTAAATTTAGGCTGCTAAACATCTCAAGATGATAGAATCTATTGCACCTACGTTTTACCAAGGAGATAGTTGTCCTCTTAAGAATAAGGCAATCTTAATGCAGTAGTATATGAAGAGAGAGAAGCTGGTGTATTTGTGAGCCTAAGGTTGTGTTTTACACATTCTGAATAATAGTTTATGTAATTAGTACGTAGGAGAGGAAATGATGAGAGAAGTGACCACAGGTTCACTCTATTGAAGAATAATTGTCCATGAACTCTAGTAGATGATCACCTTGTTACTAAATCTTGAAGTTCTACTGAACAAAAACTTCCCAACTCATTATTGAACTTCTATCAGCTGCGCTGGCGTATTTGATAATTTTGTGACCACAGGTTCAGTCTATTGAAGAATAATTGTCCATGAACTCTACCTTGTTACTAAATCTTGAAGTTATACTGAACAAAAACTTCCCAACTCATTATTGAACTTCTATCAGCTGCGCTGGCGTATTTGATAATTTTGTGTTACAATGCCGTGCTTTTACAAATTTTTATCAAAGTCTGGTACCCAACTCATTTTGTGTTACTCACTGACCTATAATGATTAAACGTTTGAAAAAATAAATCAATCAAAATTTAGTTAACAGTTGGTTAACTCGCCGAAATTGGGAAGTGCGTGCCTAAGGGTGTAAAAAATAAAGTTAGTCCCCAAAAGGTGAAAAAGGCCAAATTTTAGTCCCTAAATGTTACCTTAACTCTTCCGTATCTTGTCTTATATTTTCAGATCATTACTGCACCTCTCTCACTTCTCTCTAGATGGAAGTCTTATACTTGTACATGTGTGTGGATTAATGTTTTCATTCCACTGTTAAATACAGGTGACTAGTTTAGGTGTTTGTAAATTTTTTATGCCTGAGAGCAGTTATGTATTACATCACCTAGGAGATGTTTTCAGAATGTTCTTTGAGTCAGGTAGATGCTTATAAGTTCAATCTTGTAATTTATTTTTATTGAACTTAGCTTCTTTTGTTCGGCCTGAAACTGACTTGACCAACTTTAACAATCCCAATCCAGATTATTGAACGCCATCAACCGATTGCCTTTGCTAGGAGTTAATTTCTTGTGGGATATCGGTTGCTCAAACCTAAAATTGATTGTTTGTGGTCTCGGTTGTATGACCTTTCTCACTCGTACATTAAGATGAAAACTAAACTATTTTTTTTTGAAGTTGTTGTATTCTTGAAATAATTAGTCATAGTATTTGCTGTTCTGGATAGTTTTAAACCTGCATTGACAATGATCCAGTGTTACTGGCTGGTTGTTGAACTAAAACGTAGAGGCATGACTTATTTTGAAACAAATTGACTATCTCTATTGATGGTGTGTCGTAATGAATGTTTCTTTGCAGATTAGTGTAATAGGCATGCCAATGTTGTGGTAAGATCTAATTTGGTCCTACATAGTTGATGTGAATTTTTCTGTTGTTCGGCCTTATCGTTCCAACAGTGGTATGTGGAGCTGTTATGTACAGGATCTTTACTGGTGCAATGTAGATTAATTTTCGTATAAGTTCACATGTTAAATTCAGGTGCTGATTGAAAGCATGGTAAATGACGTATTTATGTATTAAGATACAATAATCAAAGTCCAATATGGATGGAAATATCCCAACTCCTATAGTTTAAAGAAAATTTGCATAATATTCAATTGGTTTTAGATTGTCTTTGCACATCTCTTTTTGCTTAGTCATTCTGCTTCTTGATTTTTCTATATACCAGACTGGAGGTAGTCAAGCTAGTTTGTCTTTGAGAGGGCGCGACACTTTTGGTCGTCAAGGTAGAGGAAAAGCTAGTCGGTCATTGAATTTCGGGATGATGATCGATCTTTCAGTTCTACCAAGGCACACAAAAGTGATTGCAAGGTGTTGCTAAGAAGGCTGCTAATTAAATACGGTAATTTGTCCTAAATTGTAAGACTTATTTATTCATCTGTTGTGTTGGTTAAGATTTATTACATTATGTGTAAATTTGGTTGAATTATTCAATAGTTAGTCTATGCAGGAGTGTGGATGATTGCTGCTTCGGGCTAGTGTGTAATTCCCCATCCGTAAAGATTGACGGTTAACATTGTCCATTTGTAAAATTTACGGTTACTTCATAATATACGGAGTCACTTTTTAATGTTTCTATATAGGTTGAAACGAGATTTTATTCTTGTACTTGCACAATTTTGTACTTTTAGACGTAAAATTTTGATCATGAATGAATAATTTGTAATTATTTGTACAAAATATTTTGGAGGTAATATTTGTTTATTTTCCGATTGGTGCTTTGTTGAAATTTAACCAATATTAATAAGCAGTAATTTTTTTTTAATCAAAAATCATCAAAGAGACCTGTTAGGTTAGATATTGGGTCTGTACCATTTATTTTTAAATAGTATTATGGCAAAGACACCCGTTAGGTGAAATAGGGGTCTGAGGTTGCGGGGAAAAAAAAATATCAAAG

mRNA sequence

ATTAATACGGCATACTCGTTGTAGAACATGGAATCAGAAGTCAGAGCCTAATTTTCTTTTCCCCTTCGTTCTACCAACGAAAACCAACCCCTACTCCCCCATTTTAGATCTGCGAATTCGATCAGTCCCAAACTTTGCAATCCTTTGTTCTCAATCAAAACCCCTAACTTATTTTCCATAATCATCCTCAATATCACCAATTTCTGCTGCTCGCCGAAATTGAATGAAAACCCCTAATTTTCGAAAATTTCAATGGTTGAGTTTCAATAACGTAAATTTCGACATTAAAATCTGTATGATCCATGGAGGTTTTGTACGGAGAGTCCAGTCGCTGAGCTCAAATAACATATCTAACATACAAAGGATGAATCGCAAGCTCAAAAAATGTTGAGTTTACCTCTAGATCTGAGAGGAAGGAGGCGGCCCTTGCTACTTTTTAGAAAAACGAGTCGTATTGCTTATAAGACTGGAGGTAGTCAAGCTAGTTTGTCTTTGAGAGGGCGCGACACTTTTGGTCGTCAAGGTAGAGGAAAAGCTAGTCGGTCATTGAATTTCGGGATGATGATCGATCTTTCAGTTCTACCAAGGCACACAAAAGTGATTGCAAGGTTTAGTCTATGCAGGAGTGTGGATGATTGCTGCTTCGGGCTAGTGTGTAATTCCCCATCCGTAAAGATTGACGGTTAACATTGTCCATTTGTAAAATTTACGGTTACTTCATAATATACGGAGTCACTTTTTAATGTTTCTATATAGGTTGAAACGAGATTTTATTCTTGTACTTGCACAATTTTGTACTTTTAGACGTAAAATTTTGATCATGAATGAATAATTTGTAATTATTTGTACAAAATATTTTGGAGGTAATATTTGTTTATTTTCCGATTGGTGCTTTGTTGAAATTTAACCAATATTAATAAGCAGTAATTTTTTTTTAATCAAAAATCATCAAAGAGACCTGTTAGGTTAGATATTGGGTCTGTACCATTTATTTTTAAATAGTATTATGGCAAAGACACCCGTTAGGTGAAATAGGGGTCTGAGGTTGCGGGGAAAAAAAAATATCAAAG

Coding sequence (CDS)

ATGTTGAGTTTACCTCTAGATCTGAGAGGAAGGAGGCGGCCCTTGCTACTTTTTAGAAAAACGAGTCGTATTGCTTATAAGACTGGAGGTAGTCAAGCTAGTTTGTCTTTGAGAGGGCGCGACACTTTTGGTCGTCAAGGTAGAGGAAAAGCTAGTCGGTCATTGAATTTCGGGATGATGATCGATCTTTCAGTTCTACCAAGGCACACAAAAGTGATTGCAAGGTTTAGTCTATGCAGGAGTGTGGATGATTGCTGCTTCGGGCTAGTGTGTAATTCCCCATCCGTAAAGATTGACGGTTAA

Protein sequence

MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMMIDLSVLPRHTKVIARFSLCRSVDDCCFGLVCNSPSVKIDG
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo13899.1Spo13899.1mRNA


Homology
[Close]
BLAST of Spo13899.1 vs. NCBI nr
Match: gi|902146053|gb|KNA05026.1| (hypothetical protein SOVF_194220 [Spinacia oleracea])

HSP 1 Score: 145.2 bits (365), Expect = 6.100e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

		  

Query: 1  MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMM 60
          MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMM
Sbjct: 1  MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMM 60

Query: 61 IDLSVLPRHTKVIAR 76
          IDLSVLPRHTKVIAR
Sbjct: 61 IDLSVLPRHTKVIAR 75
[Close]
BLAST of Spo13899.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEQ4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_194220 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.300e-32
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

		  

Query: 1  MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMM 60
          MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMM
Sbjct: 1  MLSLPLDLRGRRRPLLLFRKTSRIAYKTGGSQASLSLRGRDTFGRQGRGKASRSLNFGMM 60

Query: 61 IDLSVLPRHTKVIAR 76
          IDLSVLPRHTKVIAR
Sbjct: 61 IDLSVLPRHTKVIAR 75
The following BLAST results are available for this feature:
BLAST of Spo13899.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902146053|gb|KNA05026.1|6.1e-32100.hypothetical protein SOVF_1942... [more]
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BLAST of Spo13899.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QEQ4_SPIOL4.3e-32100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo13899.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo13899.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010508 positive regulation of autophagy
biological_process GO:0006468 protein phosphorylation
biological_process GO:0051302 regulation of cell division
biological_process GO:0010389 regulation of G2/M transition of mitotic cell cycle
biological_process GO:0045859 regulation of protein kinase activity
biological_process GO:0051510 regulation of unidimensional cell growth
biological_process GO:0051788 response to misfolded protein
biological_process GO:0016102 diterpenoid biosynthetic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0006189 'de novo' IMP biosynthetic process
biological_process GO:0009113 purine nucleobase biosynthetic process
biological_process GO:0051017 actin filament bundle assembly
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0034645 cellular macromolecule biosynthetic process
biological_process GO:0009987 cellular process
biological_process GO:0006474 N-terminal protein amino acid acetylation
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0051726 regulation of cell cycle
biological_process GO:0010090 trichome morphogenesis
biological_process GO:0043248 proteasome assembly
biological_process GO:0055114 oxidation-reduction process
biological_process GO:2000123 positive regulation of stomatal complex development
biological_process GO:0005982 starch metabolic process
biological_process GO:0071555 cell wall organization
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0008152 metabolic process
biological_process GO:0008283 cell proliferation
biological_process GO:0042023 DNA endoreduplication
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005737 cytoplasm
cellular_component GO:0031248 protein acetyltransferase complex
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005576 extracellular region
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0004596 peptide alpha-N-acetyltransferase activity
molecular_function GO:0016707 gibberellin 3-beta-dioxygenase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0008289 lipid binding
molecular_function GO:0003779 actin binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0004637 phosphoribosylamine-glycine ligase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0004650 polygalacturonase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0020037 heme binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo270040.75Barchart | Table
Spo222550.73Barchart | Table
Spo142400.72Barchart | Table
Spo100210.72Barchart | Table
Spo065740.71Barchart | Table
Spo079590.71Barchart | Table
Spo056270.71Barchart | Table
Spo243690.71Barchart | Table
Spo245490.71Barchart | Table
Spo242870.71Barchart | Table
Spo057650.70Barchart | Table
Spo267890.69Barchart | Table
Spo105830.69Barchart | Table
Spo092140.69Barchart | Table
Spo100190.69Barchart | Table
Spo205030.69Barchart | Table
Spo109650.69Barchart | Table
Spo051350.69Barchart | Table
Spo245660.69Barchart | Table
Spo161860.69Barchart | Table
Spo172110.68Barchart | Table
Spo187820.68Barchart | Table
Spo048730.68Barchart | Table
Spo263520.68Barchart | Table
Spo072910.68Barchart | Table
Spo018400.68Barchart | Table
Spo124230.68Barchart | Table
Spo125430.68Barchart | Table
Spo148260.68Barchart | Table
Spo247360.67Barchart | Table
Spo031630.67Barchart | Table
Spo201870.67Barchart | Table
Spo172200.67Barchart | Table
Spo037720.67Barchart | Table
Spo199860.67Barchart | Table
Spo230420.67Barchart | Table
Spo177260.67Barchart | Table
Spo024780.67Barchart | Table
Spo018410.67Barchart | Table
Spo027490.67Barchart | Table
Spo162970.66Barchart | Table
Spo039260.66Barchart | Table
Spo073200.66Barchart | Table
Spo088500.66Barchart | Table
Spo103290.66Barchart | Table
Spo106710.66Barchart | Table
Spo109660.66Barchart | Table
Spo013440.66Barchart | Table
Spo172250.66Barchart | Table
Spo185420.66Barchart | Table
Spo247810.66Barchart | Table
Spo266930.66Barchart | Table
Spo168040.65Barchart | Table
Spo149420.65Barchart | Table
Spo119740.65Barchart | Table
Spo056210.65Barchart | Table
Spo052270.65Barchart | Table
Spo051060.65Barchart | Table
Spo046570.65Barchart | Table
Spo049850.65Barchart | Table
Spo016600.65Barchart | Table
Spo217290.65Barchart | Table
Spo209120.65Barchart | Table