Spo13787 (gene)

Overview
NameSpo13787
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionCoatomer subunit beta (Beta-coat protein)
LocationSpoScf_02635 : 29357 .. 32139 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGAAGATTTTGTTCAGGTTTAAAGAATCTATCAGGGGAAATGAAAAAGATTTTGATTTTATTCCATGTAGCTTTACTATTTAACTATTTGTAACTTATTGTGGAGGAACTTGTATTAATATCTATCTCTAGAGTTATTCATAATGTATATTGTACTCGTATTAATTTGGCTTCTATTCCCTATTCAAGTGTACCAGATAGACGGAAACTAAATCTGACAGAAGTCCACTATTTTTGAAGGCTCAACTGGAATCTGAAACTCTAGGTAATTGACTTATCTGGTCGACTTTTTCAAACTTAAGTTTTTGCTTATGCTTTCTTCATGAATATCACCGTGTCAGAACGATGGAAACTAAGTCTGACACAAAGGTTAACATCTTTCTTATGTGATGCAGTATTGTCTTCTGTTTTTGCTGTACACTTGTTTTAAGTTTTAACTTATTGTGTGTCATGGTTTGCGTTCTTGTTTCTATGGTTACATAATATGGTTTTATCTTTTCTATTCACAAATCTTATTCATATCTGTAACTCTGTATGATAAATAACACAGGAAACTGGATTTATGACAGAAACTTCGCGATTAGTTTTACACCGCCACTGAGGAAGGAGAGGGCCAAGAGGCTCCCAAGAGAGACCAACTAGCCAGCAGTATCGCAGTTTCTTCTAGAAGGCATGTGGTCCTTTCAGATGGCACTCATGCCACTCAAAGTGCAGCCCTAGAAACTGCTATTTCTCCCCCTACCTTAGTTCAAGGGTCGTTGGCTACTCAAGGAAACCTGAGATCACTGCTGCTATCTGGTGACTTCTTCCCTGGAGCTGTTGTTGCCTGTATTTTTACAAAGCTTGTTTTGAGGTTGGAGGAGGTTCAACCATCCAAGGTTGAAAGGATAGTTCTATGCATCAGACTTCTCTGAATACCATAGATGCGACTAGAAAAATATGGCTTCACTGTTGCAAAGAAAGCATTGTTAACATGCTTGCAGACAAGCAATTCTGTGAAACCGAGAGGAAAGCCAAGGCTCAGGTTTCTCACTCTCAACCTGACAACCTCATCGACTTCTATCATTTGTAGAGCAAGAAGGTTAGTGTGAATATCTTTTTATTTATAGGTGTGTTGGTTTTATGGTAGAAGTCGTAGAACTTATGTTTAACAAATTAAGTAGATGGAAAATTAGAAGATAATCCTTCATTGACTCGTGATTCTTTATTCAATCTGCATTATCATACCAAAGGGAAGTTCAAACTTCAAATATGCTTTTCTTACCGTCTTTATTCGGAATTTTAGTTGGTTTTTAATTTGATATGCTAGCTATATGATGACTGTATTTAGCACAAATGGGAAGTACTAGCTTTTTTTCTTGTCATAACAATGTGGTCATGGCCTTGAACTCTATTTTGCCAGTGTGGAGGATGACTAATTTGATAATTCCTGCAGTCAAATAGTAGTAGACCTTCACTGTTGTAAATTTACTGTTTCTTTTTACTTTCTTGTAGGAACTTTAGTTCATATTGTTGTCTGCTAATTTTAATTTGATATTTTAATAATTGGTATCAGCATTTGTCGTATAGAATTGGTGTACAAGATTTTTTTTCATTTATAGTTTAAGAACTTTGGGAAAATGATATGTTCAAGCAAGTGTTGTCTTAGGATTTTCTTGATGCAGATAAATATTTTCAAAGTTTATAATTATCACAGATTACCTCAGCTTTTTCTATTAGATTGTTCATACGGGGAACTAGATTATGTCTTTGTTTGTAGAAATGCTAATCTAAACCTAGGAGCCATAATTCTGATGACTGATCTAAATGAGAAACATATATGGTTATAGTATCTTTCTCAAACTACCGGTTCTCACTTCTATGCTTTACATTGTTCTAGGTTATAGTTGTTACATGGGTTAGCTACAAGCCTAAGATGTTTTTTTTTTTGCAGAGCTAGCCGTCACATCTCTTATGTTAAAGTATCTATCTCTTTCTCTATTAGTACAGTTGATCAACGAGCTTTTTTAAACTCAATTCCCCCCTGATCCAGATTTTATTTTCGAGTACTTGATCACTTTCATAAGCATGCTTGAAATAATAACTACTCATCCATGCAATCATGGAAAGGTGTATTACTATATATGTTGGTTCCATTGGATATGAACCAATACTATTTGTCCATTTTATGTTCTGCTGATTTGTTTTCTTGATATGAGCTATTGCATATTCACACAACATTAGCCATTCTGGTTTGCATAATTGTACTCATGATGAGGTGCTTACTTAGTCCCTGCACAACTGCTGACCCAGTTCTGTTTTCTGCTTCATTTTGATATGAGCTGTCACATATTAATCTGCACAATGGTGCTGCTGATGGATTGTGCCGTGGGCAGACTTCACAAATACCTGCTGTCGAGGACTAAAAGTGCTGCAAAGGATGGTTGAAGCATAGTAGAAGCGTGGAAATTTCAGTTTGTAGAAACGTGGGCAGACTTCACAAATACCTGCTGCCGAGGACTAAAAGTGCTGCAAAGGATGGTTGAAGTATAGTAGAAGCGTGGAAATTTCAGTTTGTAAAAACTAGTTTTGACCAAAGTTGACCTTAGTTGACTATGCTAGTTTTTTGGGTTTCTTTGGGTTTTTTTTCTTGTAATTTTCTTTGTTTAGCTTTGGTAGGCTACTTTATTTCATCAAGACCGCATTTTGTTGCGTGACTAGGTTTGGTTGAGCTTGTATAAACTTTACTTCATTTTTTGGTTAATAAAATTTCTTGTGTACCAAAAAGAGGGAAAAAAAA

mRNA sequence

ATGCATGAAGATTTTGTTCAGTTTTACACCGCCACTGAGGAAGGAGAGGGCCAAGAGGCTCCCAAGAGAGACCAACTAGCCAGCAGTATCGCAGTTTCTTCTAGAAGGCATGTGGTCCTTTCAGATGGCACTCATGCCACTCAAAGTGCAGCCCTAGAAACTGCTATTTCTCCCCCTACCTTAGTTCAAGGGTCGTTGGCTACTCAAGGAAACCTGAGATCACTGCTGCTATCTGGTGACTTCTTCCCTGGAGCTGTTGTTGCCTGTATTTTTACAAAGCTTGTTTTGAGGTTGGAGGAGGTTCAACCATCCAAGACAAGCAATTCTGTGAAACCGAGAGGAAAGCCAAGGCTCAGGTTTCTCACTCTCAACCTGACAACCTCATCGACTTCTATCATTTGTAGAGCAAGAAGACTTCACAAATACCTGCTGTCGAGGACTAAAAGTGCTGCAAAGGATGGTTGAAGCATAGTAGAAGCGTGGAAATTTCAGTTTGTAGAAACGTGGGCAGACTTCACAAATACCTGCTGCCGAGGACTAAAAGTGCTGCAAAGGATGGTTGAAGTATAGTAGAAGCGTGGAAATTTCAGTTTGTAAAAACTAGTTTTGACCAAAGTTGACCTTAGTTGACTATGCTAGTTTTTTGGGTTTCTTTGGGTTTTTTTTCTTGTAATTTTCTTTGTTTAGCTTTGGTAGGCTACTTTATTTCATCAAGACCGCATTTTGTTGCGTGACTAGGTTTGGTTGAGCTTGTATAAACTTTACTTCATTTTTTGGTTAATAAAATTTCTTGTGTACCAAAAAGAGGGAAAAAAAA

Coding sequence (CDS)

ATGCATGAAGATTTTGTTCAGTTTTACACCGCCACTGAGGAAGGAGAGGGCCAAGAGGCTCCCAAGAGAGACCAACTAGCCAGCAGTATCGCAGTTTCTTCTAGAAGGCATGTGGTCCTTTCAGATGGCACTCATGCCACTCAAAGTGCAGCCCTAGAAACTGCTATTTCTCCCCCTACCTTAGTTCAAGGGTCGTTGGCTACTCAAGGAAACCTGAGATCACTGCTGCTATCTGGTGACTTCTTCCCTGGAGCTGTTGTTGCCTGTATTTTTACAAAGCTTGTTTTGAGGTTGGAGGAGGTTCAACCATCCAAGACAAGCAATTCTGTGAAACCGAGAGGAAAGCCAAGGCTCAGGTTTCTCACTCTCAACCTGACAACCTCATCGACTTCTATCATTTGTAGAGCAAGAAGACTTCACAAATACCTGCTGTCGAGGACTAAAAGTGCTGCAAAGGATGGTTGA

Protein sequence

MHEDFVQFYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLATQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSKTSNSVKPRGKPRLRFLTLNLTTSSTSIICRARRLHKYLLSRTKSAAKDG
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo13787.1Spo13787.1mRNA


Homology
[Close]
BLAST of Spo13787.1 vs. NCBI nr
Match: gi|902231727|gb|KNA22373.1| (hypothetical protein SOVF_034580 [Spinacia oleracea])

HSP 1 Score: 170.6 bits (431), Expect = 2.100e-39
Identity = 91/98 (92.86%), Postives = 93/98 (94.90%), Query Frame = 1 

		  

Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FYTATEEGEGQEAPKRDQLASSI VSSRR VVL+DGT+ATQSAALETAISPPTLVQGSLA
Sbjct: 483 FYTATEEGEGQEAPKRDQLASSITVSSRRPVVLADGTYATQSAALETAISPPTLVQGSLA 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           TQGNLRSLLLSGDFF GAVVAC  TKLVLRLEEVQPSK
Sbjct: 543 TQGNLRSLLLSGDFFLGAVVACTLTKLVLRLEEVQPSK 580
[Close]
BLAST of Spo13787.1 vs. NCBI nr
Match: gi|731368336|ref|XP_010696091.1| (PREDICTED: coatomer subunit beta-1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 157.1 bits (396), Expect = 2.400e-35
Identity = 83/98 (84.69%), Postives = 88/98 (89.80%), Query Frame = 1 

		  

Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FYTA EEGE QE P+ DQLAS+I VSSRR VVL+DGT+ATQSAALETA+SPPTLV GSLA
Sbjct: 483 FYTAVEEGEAQEVPRSDQLASAITVSSRRPVVLADGTYATQSAALETAMSPPTLVHGSLA 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           TQGNLRSLLLSGDFF GAVVAC  TKLVLRLEEVQPSK
Sbjct: 543 TQGNLRSLLLSGDFFLGAVVACTLTKLVLRLEEVQPSK 580
[Close]
BLAST of Spo13787.1 vs. NCBI nr
Match: gi|449461669|ref|XP_004148564.1| (PREDICTED: coatomer subunit beta-1 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 6.100e-31
Identity = 75/98 (76.53%), Postives = 84/98 (85.71%), Query Frame = 1 

		  

Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FYTA+EEGE QE+ K  Q  SS  VSSRR  +L+DGT+ATQSAALETA+SPPTLVQGSL+
Sbjct: 483 FYTASEEGEAQESSKTSQQVSSTTVSSRRPAILADGTYATQSAALETAMSPPTLVQGSLS 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           + GNLRSL+LSGDFF GAVVAC  TKLVLRLEEVQPSK
Sbjct: 543 SIGNLRSLILSGDFFLGAVVACTLTKLVLRLEEVQPSK 580
[Close]
BLAST of Spo13787.1 vs. NCBI nr
Match: gi|659127983|ref|XP_008463989.1| (PREDICTED: coatomer subunit beta-1-like [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 6.100e-31
Identity = 75/98 (76.53%), Postives = 84/98 (85.71%), Query Frame = 1 

		  

Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FYTA+EEGE QE+ K  Q  SS  VSSRR  +L+DGT+ATQSAALETA+SPPTLVQGSL+
Sbjct: 483 FYTASEEGEAQESSKTSQQVSSTTVSSRRPAILADGTYATQSAALETAMSPPTLVQGSLS 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           + GNLRSL+LSGDFF GAVVAC  TKLVLRLEEVQPSK
Sbjct: 543 SIGNLRSLILSGDFFLGAVVACTLTKLVLRLEEVQPSK 580
[Close]
BLAST of Spo13787.1 vs. NCBI nr
Match: gi|1009152289|ref|XP_015894017.1| (PREDICTED: coatomer subunit beta-1-like [Ziziphus jujuba])

HSP 1 Score: 139.8 bits (351), Expect = 4.000e-30
Identity = 77/100 (77.00%), Postives = 84/100 (84.00%), Query Frame = 1 

		  

Query: 8   FYTATEEGEGQEAPKRDQ--LASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGS 67
           F+TATEEGEGQE+ K       SS  VSSRR VVL+DGT+ATQSAALETA+SPPT VQGS
Sbjct: 486 FFTATEEGEGQESSKTSNPVTVSSTTVSSRRPVVLADGTYATQSAALETAMSPPTFVQGS 545

Query: 68  LATQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           LA+ GNLRSL+LSGDFF GAVVAC  TKLVLRLEEVQPSK
Sbjct: 546 LASIGNLRSLILSGDFFLGAVVACTLTKLVLRLEEVQPSK 585
[Close]
BLAST of Spo13787.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RSD0_SPIOL (Coatomer subunit beta OS=Spinacia oleracea GN=SOVF_034580 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.500e-39
Identity = 91/98 (92.86%), Postives = 93/98 (94.90%), Query Frame = 1 

		  

Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FYTATEEGEGQEAPKRDQLASSI VSSRR VVL+DGT+ATQSAALETAISPPTLVQGSLA
Sbjct: 483 FYTATEEGEGQEAPKRDQLASSITVSSRRPVVLADGTYATQSAALETAISPPTLVQGSLA 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           TQGNLRSLLLSGDFF GAVVAC  TKLVLRLEEVQPSK
Sbjct: 543 TQGNLRSLLLSGDFFLGAVVACTLTKLVLRLEEVQPSK 580
[Close]
BLAST of Spo13787.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BB80_BETVU (Coatomer subunit beta OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g177690 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.700e-35
Identity = 83/98 (84.69%), Postives = 88/98 (89.80%), Query Frame = 1 

		  

Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FYTA EEGE QE P+ DQLAS+I VSSRR VVL+DGT+ATQSAALETA+SPPTLV GSLA
Sbjct: 483 FYTAVEEGEAQEVPRSDQLASAITVSSRRPVVLADGTYATQSAALETAMSPPTLVHGSLA 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           TQGNLRSLLLSGDFF GAVVAC  TKLVLRLEEVQPSK
Sbjct: 543 TQGNLRSLLLSGDFFLGAVVACTLTKLVLRLEEVQPSK 580
[Close]
BLAST of Spo13787.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LCU8_CUCSA (Coatomer subunit beta OS=Cucumis sativus GN=Csa_3G651770 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.300e-31
Identity = 75/98 (76.53%), Postives = 84/98 (85.71%), Query Frame = 1 

		  

Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FYTA+EEGE QE+ K  Q  SS  VSSRR  +L+DGT+ATQSAALETA+SPPTLVQGSL+
Sbjct: 483 FYTASEEGEAQESSKTSQQVSSTTVSSRRPAILADGTYATQSAALETAMSPPTLVQGSLS 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           + GNLRSL+LSGDFF GAVVAC  TKLVLRLEEVQPSK
Sbjct: 543 SIGNLRSLILSGDFFLGAVVACTLTKLVLRLEEVQPSK 580
[Close]
BLAST of Spo13787.1 vs. UniProtKB/TrEMBL
Match: A0A0B2RY30_GLYSO (Coatomer subunit beta OS=Glycine soja GN=glysoja_018128 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.700e-30
Identity = 74/98 (75.51%), Postives = 83/98 (84.69%), Query Frame = 1 

		  

Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FYT TEEG+GQEA K  Q  +S  VSSRR  +L+DGT+ATQSAALETA+SPPTLVQGSL+
Sbjct: 483 FYTVTEEGDGQEASKPIQQVNSTTVSSRRPAILADGTYATQSAALETAMSPPTLVQGSLS 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           + GNLRSL+LSGDFF GAVVAC  TKLVLRLEEVQ SK
Sbjct: 543 SIGNLRSLILSGDFFLGAVVACTLTKLVLRLEEVQTSK 580
[Close]
BLAST of Spo13787.1 vs. UniProtKB/TrEMBL
Match: I1KG56_SOYBN (Coatomer subunit beta OS=Glycine max GN=GLYMA_07G004100 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.700e-30
Identity = 74/98 (75.51%), Postives = 83/98 (84.69%), Query Frame = 1 

		  

Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FYT TEEG+GQEA K  Q  +S  VSSRR  +L+DGT+ATQSAALETA+SPPTLVQGSL+
Sbjct: 483 FYTVTEEGDGQEASKPIQQVNSTTVSSRRPAILADGTYATQSAALETAMSPPTLVQGSLS 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSK 106
           + GNLRSL+LSGDFF GAVVAC  TKLVLRLEEVQ SK
Sbjct: 543 SIGNLRSLILSGDFFLGAVVACTLTKLVLRLEEVQTSK 580
[Close]
BLAST of Spo13787.1 vs. ExPASy Swiss-Prot
Match: COPB1_ORYSJ (Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica GN=Os11g0174000 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 9.100e-27
Identity = 72/123 (58.54%), Postives = 85/123 (69.11%), Query Frame = 1 

		  

Query: 8   FYTATEEGEGQEAPKRDQ-LASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSL 67
           FYT +EEGE  +A K  Q + +S+ VSSRR VVL+DGT+ATQSAA ETAIS P +  GSL
Sbjct: 485 FYTVSEEGESTDASKPAQPVVNSVTVSSRRPVVLADGTYATQSAATETAISSPAVAPGSL 544

Query: 68  ATQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSKTSNSVKPRGKPRLRFLTLNLT 127
           ++  NLRSL+LSGDFF  AVVAC  TKLVLRLEEVQPSK   +    G   +    L L 
Sbjct: 545 SSTQNLRSLILSGDFFLAAVVACTLTKLVLRLEEVQPSKAEANKASTGALLIMVSILQLG 604

Query: 128 TSS 130
            SS
Sbjct: 605 QSS 607
[Close]
BLAST of Spo13787.1 vs. ExPASy Swiss-Prot
Match: COPB1_ARATH (Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=2 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 2.700e-26
Identity = 67/99 (67.68%), Postives = 77/99 (77.78%), Query Frame = 1 

		  

Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FY+ +EE E  E  K+ Q  SS  VSSR+ V+L+DGT+ATQSAA ET  S PT+VQGSL 
Sbjct: 483 FYSVSEESEPTETSKKIQPTSSAMVSSRKPVILADGTYATQSAASETTFSSPTVVQGSL- 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSKT 107
           T GNLR+LLL+GDFF GAVVAC  TKLVLRLEEVQ SKT
Sbjct: 543 TSGNLRALLLTGDFFLGAVVACTLTKLVLRLEEVQSSKT 580
[Close]
BLAST of Spo13787.1 vs. ExPASy Swiss-Prot
Match: COPB2_ARATH (Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490 PE=2 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 2.700e-26
Identity = 67/99 (67.68%), Postives = 77/99 (77.78%), Query Frame = 1 

		  

Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FY+ +EE E  E  K+ Q  SS  VSSR+ V+L+DGT+ATQSAA ET  S PT+VQGSL 
Sbjct: 483 FYSVSEESEPTETSKKIQPTSSAMVSSRKPVILADGTYATQSAASETTFSSPTVVQGSL- 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSKT 107
           T GNLR+LLL+GDFF GAVVAC  TKLVLRLEEVQ SKT
Sbjct: 543 TSGNLRALLLTGDFFLGAVVACTLTKLVLRLEEVQSSKT 580
[Close]
BLAST of Spo13787.1 vs. ExPASy Swiss-Prot
Match: COPB2_ORYSJ (Coatomer subunit beta-2 OS=Oryza sativa subsp. japonica GN=Os01g0281400 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.200e-23
Identity = 63/100 (63.00%), Postives = 78/100 (78.00%), Query Frame = 1 

		  

Query: 6   VQFYTATEEGEGQEAPKRDQ-LASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQG 65
           V FYT +EEGE  ++ K  Q + +S+ VSSRR VVL+DGT+ATQSAA E AIS P++  G
Sbjct: 482 VPFYTVSEEGEATDSAKPAQPVVNSVTVSSRRPVVLADGTYATQSAATE-AISTPSVAPG 541

Query: 66  SLATQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPS 105
           SL++  NLRSL+LSGDFF  AV++C  TKLVLRLEEVQPS
Sbjct: 542 SLSSTLNLRSLILSGDFFLAAVISCTLTKLVLRLEEVQPS 580
[Close]
BLAST of Spo13787.1 vs. TAIR (Arabidopsis)
Match: AT4G31480.1 (Coatomer, beta subunit)

HSP 1 Score: 119.8 bits (299), Expect = 1.500e-27
Identity = 67/99 (67.68%), Postives = 77/99 (77.78%), Query Frame = 1 

		  

Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FY+ +EE E  E  K+ Q  SS  VSSR+ V+L+DGT+ATQSAA ET  S PT+VQGSL 
Sbjct: 483 FYSVSEESEPTETSKKIQPTSSAMVSSRKPVILADGTYATQSAASETTFSSPTVVQGSL- 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSKT 107
           T GNLR+LLL+GDFF GAVVAC  TKLVLRLEEVQ SKT
Sbjct: 543 TSGNLRALLLTGDFFLGAVVACTLTKLVLRLEEVQSSKT 580
[Close]
BLAST of Spo13787.1 vs. TAIR (Arabidopsis)
Match: AT4G31490.1 (Coatomer, beta subunit)

HSP 1 Score: 119.8 bits (299), Expect = 1.500e-27
Identity = 67/99 (67.68%), Postives = 77/99 (77.78%), Query Frame = 1 

		  

Query: 8   FYTATEEGEGQEAPKRDQLASSIAVSSRRHVVLSDGTHATQSAALETAISPPTLVQGSLA 67
           FY+ +EE E  E  K+ Q  SS  VSSR+ V+L+DGT+ATQSAA ET  S PT+VQGSL 
Sbjct: 483 FYSVSEESEPTETSKKIQPTSSAMVSSRKPVILADGTYATQSAASETTFSSPTVVQGSL- 542

Query: 68  TQGNLRSLLLSGDFFPGAVVACIFTKLVLRLEEVQPSKT 107
           T GNLR+LLL+GDFF GAVVAC  TKLVLRLEEVQ SKT
Sbjct: 543 TSGNLRALLLTGDFFLGAVVACTLTKLVLRLEEVQSSKT 580
The following BLAST results are available for this feature:
BLAST of Spo13787.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902231727|gb|KNA22373.1|2.1e-3992.8hypothetical protein SOVF_0345... [more]
gi|731368336|ref|XP_010696091.1|2.4e-3584.6PREDICTED: coatomer subunit be... [more]
gi|449461669|ref|XP_004148564.1|6.1e-3176.5PREDICTED: coatomer subunit be... [more]
gi|659127983|ref|XP_008463989.1|6.1e-3176.5PREDICTED: coatomer subunit be... [more]
gi|1009152289|ref|XP_015894017.1|4.0e-3077.0PREDICTED: coatomer subunit be... [more]
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BLAST of Spo13787.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RSD0_SPIOL1.5e-3992.8Coatomer subunit beta OS=Spina... [more]
A0A0J8BB80_BETVU1.7e-3584.6Coatomer subunit beta OS=Beta ... [more]
A0A0A0LCU8_CUCSA4.3e-3176.5Coatomer subunit beta OS=Cucum... [more]
A0A0B2RY30_GLYSO4.7e-3075.5Coatomer subunit beta OS=Glyci... [more]
I1KG56_SOYBN4.7e-3075.5Coatomer subunit beta OS=Glyci... [more]
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BLAST of Spo13787.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
COPB1_ORYSJ9.1e-2758.5Coatomer subunit beta-1 OS=Ory... [more]
COPB1_ARATH2.7e-2667.6Coatomer subunit beta-1 OS=Ara... [more]
COPB2_ARATH2.7e-2667.6Coatomer subunit beta-2 OS=Ara... [more]
COPB2_ORYSJ1.2e-2363.0Coatomer subunit beta-2 OS=Ory... [more]
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BLAST of Spo13787.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G31480.11.5e-2767.6Coatomer, beta subunit[more]
AT4G31490.11.5e-2767.6Coatomer, beta subunit[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016460Coatomer beta subunit (COPB1)PANTHERPTHR10635COATOMER SUBUNIT BETAcoord: 11..105
score: 7.8

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0006508 proteolysis
biological_process GO:0032259 methylation
cellular_component GO:0030126 COPI vesicle coat
cellular_component GO:0005634 nucleus
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005198 structural molecule activity
molecular_function GO:0004185 serine-type carboxypeptidase activity
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0008270 zinc ion binding
RNA-Seq Expression