Spo13719 (gene)

Overview
NameSpo13719
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00277 : 300738 .. 305638 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAGAAAAACAATTGCGAACTAGTACTCCGTAAACAAGTTTTGTTTAAATCCAGCCTTGTGTTTGCAAAAAGCTTGACTCGTTCTCTCTCTCTGAAAACCCTAAACCCTAAAACACAACCACAAACAAATCAACAATGGCAGAACTCCCGATCTCAGTCGACAGCCTTAAGAGATTCTGGAATGCTCAGGTTCACGACCCTAACAAGTGGGCTTTTAACATGGTAATCTATCGATTTCTTAAACCCTAATTTTTGTTTTCCCTCTTTCAATTTTCTTTGAATTCATCGTTAACTTTGTGCGTTTGTGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTGTAAAATCCAGTTTATATGATTTCTGGGTTGATGTATTAGATGATTGTGTTGATTTATTTATTTTGATTAAAATCATATACTCTAGAAAGTGTTGCCCCATTGGAGGGAAATAATTTGGCTGATTACAATTAAGTTAGAATTAGGCTTTGAAGTGTTGCTGAAGCCTGAAGGTTCAGTGTATATGAGCTGGATGAGCGTTAGCTACTTAGCTAGTTAGTTTAGTTTATTGTGAGTATACGTTTATCTCTAGCTGCTCTTTAGTGAAGAAGGACCGACCCGTCTCTTCTATCAATTTCGTATTCCAATGAAGCTATATGTTCTCTTGTATCACGTTGCTATAACGTTTTTTTTTCAGACGCTTCCTTGTGTGACTGTGTCATACATAATCACTTTTGTGATGAGGCACTAGTTTTCGTTAGATTATGTTCAAGTGGTTGTTTAAATGAGCCTTTCCTGTTAAAATCTGCTAAATGTTTAGCAATTTGGTTGTAGGAGGCGATTCTGATTGGTTTACATAGCAAACATTTGAAGCATGTAATTATGTACTGCTGTTTCCGTTATCTATGAAGCACTATGTATGTGAGAATTGTTTTTTATGTTTAGACTTGTGTAGTGTGTACCATTGTTGGATTTTTGAAGGAGAATTATTTCAAATGAATGAATATTTCATTTTGAAACTGAAAGATTCTCCCCTTTTTCATTACTACAGATTATTGACTTTGTGTGATTACACCAGCACAGTCTTATATCAAATCCATTTTCCACTAATTTGCCTACCTCACCCTTCCACCTTGCCTAATGTATATCGTGAGAAGCAATAGTGAGTATAATAGTGAAAAAGACATATGACTTCCAAATTACTGCACCATTCTGCTTTTTGTATAATGTTATAAAGAAACTGTCAGTTCCGTTTATAGTGAATGTAGGACATTATTAGAAGTGTAGGCTTTTATTCATTTGAAGCCAAAATGTATGAAATTATAATATGAACAGATTGAAACTCTGATTCCAAAGATGATCACTTATCAGAAATGGGAGTTCATGGTCACGCTAGCATCTTTGATGTTGGACTATTCGATCTTTCCTAGAGAGAGGGGTTCTCCCTTTTCTTCTAGAAAGGGATCCTTAAAATCCCTAGATCTTAGCTACCCCAACTCTTCCAAGACATCTCTTCTTATGCCCCCTCCCCTCCTCCTCTGCGGCTCTGCCGCTAGGCCTTTGTGTTGCTCTTTGGCTTTGGTTCTACCCATCCAGTAGCCAATGCTTTGTTGGCCGTGTTGGGAATTTGATATTCACCTCTACCCATTGGCCTATTGGGTTCTGTTTTTCATGTTAGATTGTTGTGTTCTTGGTGGCTCACCTCATACTGTATCGCCCTATTATGAATCTCTATTTTCTCGTTGTTTCTCAGGGTTGTAGACTAGTTTTTTTCTTTTCTTTTTTGATTGGAGGTTGGAGACTAGTTTGTTATCTTTGTTTGTTCACTTCTTGATCTTTAGTTAGGTTTTTAGTTTAAGCTTTAGAATCCTATGGTGGTTGTTTTGGGTCTTGAGGGATTGTTCTTGTTACAAATCTGGCTGTTGCCTAAAGTACTTGTCCTGCTAATGTTTTCTGATGTTTCATAAATTTTACATGCTTGTATAAATATTGCAGACACTCTTGAGTCTTGATTGTTTAGGAATGTAGGAAGTTAATCAGGGTTTGTCTTTTAGGATACCCCTATTTTTTATACGAGTATTGTAGATGAGTGATTTATACTATATCTTTCTTGTTTCTCATTCTGGGTCTGTTATTGGCAGAAATTTTTGCGAGCTGCTGGAATGTTTGCTGGCTCAGTCATTTTTATCCGAAACTTTGGAGAAAGCGTTGCTCTTTAAGTCTGGATGATGGGATTTGTTATTTGTAGCGCGCTGAAATGTTCTATTTCTACTATTCATTTCAGTATCTTAGTAAAGCTCACGCTCTTTGTATGCTGAGATTTTACTTTCAGTTAGTAAAGCTCAGTCTCTCTAGTTTTGGCATAGGAAGCATAGAAGCTGTTCTAAAAGTTCTATTATAATGGTTTGAACTTCGAATAAAATGTAGTTTTGGCATAGGAAGCATAGAAGCTGTTCTAAAAGTTCTATTATAATGATTTTGGTTTTACACTTTTTTTTGTTCTAAGAATCAACTCAATGAAATAACTTTGGTCCTTGTTTTTCCTCTCCAAAGTCGATTTGATGGCTGCAAACTCGAAAATTTGTAAGTTCTTATGCGCATAACCGGAGTTTCAGTAGGATTTTGAATTGTTTTCTGTAATTTATCTAACAATACTACAAAAGGTTGACTGTATAAATGTGGAACTCTATCAATTTTCTCTAGAAATAATAAGAATTAGTTCAACAAAATTCAAATAATACGATCTTTTAATTACATCATCCACTTGTATAGTTCTAACATAACATCGTCGTGCTTTAGAGTAGTCATTTTAGAAACGAAGCCTATAGCGAGAATCAAAAGCAGAAAAATCATTATATTGACCAAAATGTTCTTTCAATCTCTATCTTGATCAAGTATAGTGAAGAAAGTAGGTGTTGGGTATTTTATAGGAGCAATTGTTTAAGCAAAATCATCAAAAGTGCTGAAATTGTTAGAATTAAGAACTACATGTTACATATATATATACACAGGCCATCAAATTTTGGGTTTCTTTATCATGTTTACCAGTAATCTCCACAAGAGCAGCTCCCATCTTTGAAATGGTGAAACCTTGTATTATCTCTAACAATTATTTCCCTCCCTTCTATGGCCGATATGAACTTCAATGCTCGATGACAATCCCCGCACACTCTCAGATTCTTAAAAACCCGAATAGGCAATCCTCTTGGCACCTTAATCAACCCATAAGCAACTGCCAATTTCTCACCATGCCATAACAGTAGTTTCTGTTTCTGCTCAGCACCAATATCATGCAGTGCGAATTCAAAATCAGGCACATACCCTGCTAACTTCATCTTCCCCTCTAGTTCATCAAGCTTTTCATGAATCACAGGCAATTCTGGGTGTACTCTATCACTCGACCTAAATTCATGAACTATATTCTTTATCTCAATCCAACTGTAACCTGGCATTTTCACTACATTATTACTCTTCATGGATTTCCAAACCCTAGAAACATTGTCCCATCTCTTTTTAGCAGCATAAACATTAGCTAGTTGGACATATGCTCCTGCATTTGTTGGATCAACCTGAAGCAAATTGTTTGCAGCAAACTCAGCCAACTCTATGTTCTTGTGGATTCTAGAAGCTCCCAAAAGACTCCCAAATATTGCAGCATTTGGTTTGAAGGGCATTTGTGTAATTAAGTCGGTAGCTTCTTTAAGCTTACCAGCACGGCCTAGGAGGTCAACCATGCATATGTAGTGCTCTAGTTTAGGTCTAACCCCGTAAACTTTATGCATTGAATCGAAATATTGCATCCCGAGATCTACTAGTCCAACATGATTGCAAGCTGATAAAACTGCAACAAAAGTGATCCAATCTGGCTTTATTTTTTCACTTGCCATCTTTTTGAACAGAGCAAGGGATCTCTGACTTAAACCATGAGTAGCATACCCTGAAATCATGGCGTTCCAAGTAACCATATCTTTCATAGGCATCTCTGTAAACAACTTCCACGCGTCCTCTAAAACTCCACATTTGCTATACATACTCAACAATGACGTCCGAACTGTAGTATCCCTGTAAAATGGAGACTTGTATACAAATTGATGAATTTGCTTCCCCAAGATTAAAGCTGATAAATTGCTACAACCCAACAAAACACTGGTCATGGTTAATGGGTTTGGTTCAACCCTGGATTCCACCATCATCTTGAAGAGATTGACAGCATCTTCTTGTCGAGAATTTGCAACATATCCAGAAATCATAGCATTACATGTAATTGAACTCTTCATATCCATTTCTTCATACATTCTCTCAGCCAGTTCAACCATACCAATTTTCATATACCCAGTTATCAATGCAGTCCGAGCTACCACACTCTTAAACGGATCAATCCTAAACAGCCTCATAGCTGAATCCAGATCCCCACACTCTGCATACCCCGATATCATCACATTCCACGACACACTATTCCTCTCCGGCATTGCTGTAAACAGCCTCTCAGTTTCCTCCATCAACCCATTTTCAGCAAAACCCGAAACCATGGTATTCCAAGAAGCAATATCCTTAACAGGCATTTTCTCAAAAAACAATCTAGCACCATCAACATCCGAATTACGCAAATAA

mRNA sequence

AAAAAAGAAAAACAATTGCGAACTAGTACTCCGTAAACAAGTTTTGTTTAAATCCAGCCTTGTGTTTGCAAAAAGCTTGACTCGTTCTCTCTCTCTGAAAACCCTAAACCCTAAAACACAACCACAAACAAATCAACAATGGCAGAACTCCCGATCTCAGTCGACAGCCTTAAGAGATTCTGGAATGCTCAGGTTCACGACCCTAACAAGTGGGCTTTTAACATGATTGAAACTCTGATTCCAAAGATGATCACTTATCAGAAATGGGAGTTCATGGTCACGCTAGCATCTTTGATGTTGGACTATTCGATCTTTCCTAGAGAGAGGGGTTCTCCCTTTTCTTCTAGAAAGGGATCCTTAAAATCCCTAGATCTTAGCTACCCCAACTCTTCCAAGACATCTCTTCTTATGCCCCCTCCCCTCCTCCTCTGCGGCTCTGCCGCTAGGCCTTTGTGTTGCTCTTTGGCTTTGATTAAAGCTGATAAATTGCTACAACCCAACAAAACACTGGTCATGGTTAATGGGTTTGGTTCAACCCTGGATTCCACCATCATCTTGAAGAGATTGACAGCATCTTCTTGTCGAGAATTTGCAACATATCCAGAAATCATAGCATTACATGTAATTGAACTCTTCATATCCATTTCTTCATACATTCTCTCAGCCAGTTCAACCATACCAATTTTCATATACCCAGTTATCAATGCAGTCCGAGCTACCACACTCTTAAACGGATCAATCCTAAACAGCCTCATAGCTGAATCCAGATCCCCACACTCTGCATACCCCGATATCATCACATTCCACGACACACTATTCCTCTCCGGCATTGCTGTAAACAGCCTCTCAGTTTCCTCCATCAACCCATTTTCAGCAAAACCCGAAACCATGGTATTCCAAGAAGCAATATCCTTAACAGGCATTTTCTCAAAAAACAATCTAGCACCATCAACATCCGAATTACGCAAATAA

Coding sequence (CDS)

ATGGCAGAACTCCCGATCTCAGTCGACAGCCTTAAGAGATTCTGGAATGCTCAGGTTCACGACCCTAACAAGTGGGCTTTTAACATGATTGAAACTCTGATTCCAAAGATGATCACTTATCAGAAATGGGAGTTCATGGTCACGCTAGCATCTTTGATGTTGGACTATTCGATCTTTCCTAGAGAGAGGGGTTCTCCCTTTTCTTCTAGAAAGGGATCCTTAAAATCCCTAGATCTTAGCTACCCCAACTCTTCCAAGACATCTCTTCTTATGCCCCCTCCCCTCCTCCTCTGCGGCTCTGCCGCTAGGCCTTTGTGTTGCTCTTTGGCTTTGATTAAAGCTGATAAATTGCTACAACCCAACAAAACACTGGTCATGGTTAATGGGTTTGGTTCAACCCTGGATTCCACCATCATCTTGAAGAGATTGACAGCATCTTCTTGTCGAGAATTTGCAACATATCCAGAAATCATAGCATTACATGTAATTGAACTCTTCATATCCATTTCTTCATACATTCTCTCAGCCAGTTCAACCATACCAATTTTCATATACCCAGTTATCAATGCAGTCCGAGCTACCACACTCTTAAACGGATCAATCCTAAACAGCCTCATAGCTGAATCCAGATCCCCACACTCTGCATACCCCGATATCATCACATTCCACGACACACTATTCCTCTCCGGCATTGCTGTAAACAGCCTCTCAGTTTCCTCCATCAACCCATTTTCAGCAAAACCCGAAACCATGGTATTCCAAGAAGCAATATCCTTAACAGGCATTTTCTCAAAAAACAATCTAGCACCATCAACATCCGAATTACGCAAATAA

Protein sequence

MAELPISVDSLKRFWNAQVHDPNKWAFNMIETLIPKMITYQKWEFMVTLASLMLDYSIFPRERGSPFSSRKGSLKSLDLSYPNSSKTSLLMPPPLLLCGSAARPLCCSLALIKADKLLQPNKTLVMVNGFGSTLDSTIILKRLTASSCREFATYPEIIALHVIELFISISSYILSASSTIPIFIYPVINAVRATTLLNGSILNSLIAESRSPHSAYPDIITFHDTLFLSGIAVNSLSVSSINPFSAKPETMVFQEAISLTGIFSKNNLAPSTSELRK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo13719.1Spo13719.1mRNA


Homology
[Close]
BLAST of Spo13719.1 vs. NCBI nr
Match: gi|902230681|gb|KNA21950.1| (hypothetical protein SOVF_038200 [Spinacia oleracea])

HSP 1 Score: 68.2 bits (165), Expect = 2.600e-8
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1 

		  

Query: 1  MAELPISVDSLKRFWNAQVHDPNKWAFNM 30
          MAELPISVDSLKRFWNAQVHDPNKWAFNM
Sbjct: 1  MAELPISVDSLKRFWNAQVHDPNKWAFNM 29
[Close]
BLAST of Spo13719.1 vs. UniProtKB/TrEMBL
Match: A0A0E0HY21_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.700e-9
Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 1 

		  

Query: 138 IILKRLTASSCREFATYPEIIALHVIELFISISSYILSASSTIPIFIYPVINAV-RATTL 197
           ++L  L ASS  EF TYP     H  +    I+S      + + I +YP   AV R  + 
Sbjct: 1   MVLNSLKASSACEFFTYPATTPFHETKFLTGIASKYSMPFTALSISMYPDTIAVHRTVSP 60

Query: 198 LNGSILNSLIAESRSPHSAYPDIITFHDTLFLSGIAVNSLSVSSINPFSAKPETMVFQEA 257
            + + LN   A   SP  A  + + F +T FL+GIA N+   SS  P    P+TMVFQ+ 
Sbjct: 61  FSSAFLNHSSAVLMSPEQANLETMAFQETEFLTGIARNTALASSTAPLFDSPDTMVFQDM 120

Query: 258 ISLTGIFSKNNLAPSTSEL 276
            S+T I +K+  APS S L
Sbjct: 121 TSMTRIDAKSLRAPSASPL 139
[Close]
BLAST of Spo13719.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQY3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_038200 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.800e-8
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1 

		  

Query: 1  MAELPISVDSLKRFWNAQVHDPNKWAFNM 30
          MAELPISVDSLKRFWNAQVHDPNKWAFNM
Sbjct: 1  MAELPISVDSLKRFWNAQVHDPNKWAFNM 29
The following BLAST results are available for this feature:
BLAST of Spo13719.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902230681|gb|KNA21950.1|2.6e-8100.hypothetical protein SOVF_0382... [more]
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BLAST of Spo13719.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0E0HY21_ORYNI1.7e-936.6Uncharacterized protein OS=Ory... [more]
A0A0K9RQY3_SPIOL1.8e-8100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo13719.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo13719.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0010103 stomatal complex morphogenesis
cellular_component GO:0009507 chloroplast
molecular_function GO:0005515 protein binding
RNA-Seq Expression