Spo13427 (gene) | SpinachBase

Overview


Name	Spo13427
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Ferredoxin
Location	SpoScf_00999 : 165317 .. 165760 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCAACCACCACAACAATGATGGGCATGGCCACCACCTTTGTCCCAAAACCCCAAGCACCACCAATGATGGCGGCGCTTCCATCCAACACCGGCCGCTCTTTGTTCGGACTCAAGACCGGTAGCCGTGGCGGAAGGATGACAATGGCTGCCTACAAGGTAACCTTGGTAACACCCACCGGTAACGTAGAGTTTCAATGCCCAGACGATGTTTACATCTTGGATGCTGCTGAAGAAGAAGGCATTGACTTGCCTTACTCATGCAGAGCTGGGTCGTGCTCTTCATGCGCCGGAAAGCTTAAGACAGGTAGTCTTAACCAAGATGATCAGAGTTTTTTGGATGACGATCAGATCGATGAAGGATGGGTTCTTACCTGTGCTGCTTACCCTGTTAGTGATGTTACTATTGAGACCCACAAGGAAGAGGAGCTTACTGCCTAA

mRNA sequence

ATGGCAGCAACCACCACAACAATGATGGGCATGGCCACCACCTTTGTCCCAAAACCCCAAGCACCACCAATGATGGCGGCGCTTCCATCCAACACCGGCCGCTCTTTGTTCGGACTCAAGACCGGTAGCCGTGGCGGAAGGATGACAATGGCTGCCTACAAGGTAACCTTGGTAACACCCACCGGTAACGTAGAGTTTCAATGCCCAGACGATGTTTACATCTTGGATGCTGCTGAAGAAGAAGGCATTGACTTGCCTTACTCATGCAGAGCTGGGTCGTGCTCTTCATGCGCCGGAAAGCTTAAGACAGGTAGTCTTAACCAAGATGATCAGAGTTTTTTGGATGACGATCAGATCGATGAAGGATGGGTTCTTACCTGTGCTGCTTACCCTGTTAGTGATGTTACTATTGAGACCCACAAGGAAGAGGAGCTTACTGCCTAA

Coding sequence (CDS)

ATGGCAGCAACCACCACAACAATGATGGGCATGGCCACCACCTTTGTCCCAAAACCCCAAGCACCACCAATGATGGCGGCGCTTCCATCCAACACCGGCCGCTCTTTGTTCGGACTCAAGACCGGTAGCCGTGGCGGAAGGATGACAATGGCTGCCTACAAGGTAACCTTGGTAACACCCACCGGTAACGTAGAGTTTCAATGCCCAGACGATGTTTACATCTTGGATGCTGCTGAAGAAGAAGGCATTGACTTGCCTTACTCATGCAGAGCTGGGTCGTGCTCTTCATGCGCCGGAAAGCTTAAGACAGGTAGTCTTAACCAAGATGATCAGAGTTTTTTGGATGACGATCAGATCGATGAAGGATGGGTTCTTACCTGTGCTGCTTACCCTGTTAGTGATGTTACTATTGAGACCCACAAGGAAGAGGAGCTTACTGCCTAA

Protein sequence

MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMTMAAYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEELTA

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo13427.1	Spo13427.1	mRNA

Homology

[Close]

BLAST of Spo13427.1 vs. NCBI nr
Match: gi|119937|sp|P00221.2|FER1_SPIOL (RecName: Full=Ferredoxin-1, chloroplastic; AltName: Full=Ferredoxin I; Short=Fd I; Flags: Precursor)

HSP 1 Score: 296.6 bits (758), Expect = 2.400e-77
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1


		  
Query: 1   MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMTMAAYKVTLVTP 60
           MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMTMAAYKVTLVTP
Sbjct: 1   MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMTMAAYKVTLVTP 60

Query: 61  TGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQID 120
           TGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQID
Sbjct: 61  TGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQID 120

Query: 121 EGWVLTCAAYPVSDVTIETHKEEELTA 148
           EGWVLTCAAYPVSDVTIETHKEEELTA
Sbjct: 121 EGWVLTCAAYPVSDVTIETHKEEELTA 147

[Close]

BLAST of Spo13427.1 vs. NCBI nr
Match: gi|731315150|ref|XP_010690121.1| (PREDICTED: ferredoxin-1, chloroplastic-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 248.1 bits (632), Expect = 9.900e-63
Identity = 123/148 (83.11%), Postives = 135/148 (91.22%), Query Frame = 1


		  
Query: 1   MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMT-MAAYKVTLVT 60
           MAATTTTMMGMA TFVPKPQ P MM AL +NTGR++FGLK GSRGGR+  MA YKVTL+T
Sbjct: 1   MAATTTTMMGMAATFVPKPQLP-MMGALSTNTGRAVFGLKAGSRGGRVVAMATYKVTLIT 60

Query: 61  PTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQI 120
           P+G  EF+CPDDVY+LDAAEE+G+DLPYSCRAGSCSSCAGKLKTGSL+Q DQSFLDDDQI
Sbjct: 61  PSGTQEFECPDDVYVLDAAEEQGLDLPYSCRAGSCSSCAGKLKTGSLDQSDQSFLDDDQI 120

Query: 121 DEGWVLTCAAYPVSDVTIETHKEEELTA 148
           +EGWVLTCAAYP SDVTIETHKEEELTA
Sbjct: 121 EEGWVLTCAAYPSSDVTIETHKEEELTA 147

[Close]

BLAST of Spo13427.1 vs. NCBI nr
Match: gi|870867395|gb|KMT18264.1| (hypothetical protein BVRB_2g024300 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 237.3 bits (604), Expect = 1.700e-59
Identity = 116/141 (82.27%), Postives = 128/141 (90.78%), Query Frame = 1


		  
Query: 8   MMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMT-MAAYKVTLVTPTGNVEF 67
           MMGMA TFVPKPQ P MM AL +NTGR++FGLK GSRGGR+  MA YKVTL+TP+G  EF
Sbjct: 1   MMGMAATFVPKPQLP-MMGALSTNTGRAVFGLKAGSRGGRVVAMATYKVTLITPSGTQEF 60

Query: 68  QCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLT 127
           +CPDDVY+LDAAEE+G+DLPYSCRAGSCSSCAGKLKTGSL+Q DQSFLDDDQI+EGWVLT
Sbjct: 61  ECPDDVYVLDAAEEQGLDLPYSCRAGSCSSCAGKLKTGSLDQSDQSFLDDDQIEEGWVLT 120

Query: 128 CAAYPVSDVTIETHKEEELTA 148
           CAAYP SDVTIETHKEEELTA
Sbjct: 121 CAAYPSSDVTIETHKEEELTA 140

[Close]

BLAST of Spo13427.1 vs. NCBI nr
Match: gi|3023743|sp|O04683.1|FER1_MESCR (RecName: Full=Ferredoxin-1, chloroplastic; AltName: Full=Ferredoxin I; Flags: Precursor)

HSP 1 Score: 216.9 bits (551), Expect = 2.400e-53
Identity = 112/150 (74.67%), Postives = 123/150 (82.00%), Query Frame = 1


		  
Query: 1   MAATTTTMMG--MATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMT-MAAYKVTL 60
           MAATT  + G  M+T F PK   PPM AALP+N GR+LFGLK+ +  GR+T MAAYKVTL
Sbjct: 1   MAATTAALSGATMSTAFAPK--TPPMTAALPTNVGRALFGLKSSASRGRVTAMAAYKVTL 60

Query: 61  VTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDD 120
           VTP G  E +CPDDVYILDAAEE GIDLPYSCRAGSCSSCAGK+ +GS+NQDD SFLDDD
Sbjct: 61  VTPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDD 120

Query: 121 QIDEGWVLTCAAYPVSDVTIETHKEEELTA 148
           QI EGWVLTC AYP  DVTIETHKEEELTA
Sbjct: 121 QIKEGWVLTCVAYPTGDVTIETHKEEELTA 148

[Close]

BLAST of Spo13427.1 vs. NCBI nr
Match: gi|902237551|gb|KNA24844.1| (hypothetical protein SOVF_011970 [Spinacia oleracea])

HSP 1 Score: 205.7 bits (522), Expect = 5.600e-50
Identity = 102/147 (69.39%), Postives = 121/147 (82.31%), Query Frame = 1


		  
Query: 2   AATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMT-MAAYKVTLVTP 61
           AA  TTM+  A T V KPQ PPM+ ALP+N G+ +FGLK G RGGR+T MA YKVTLVTP
Sbjct: 3   AAAATTMV--AATLVRKPQTPPMLGALPTNVGQVMFGLKAGGRGGRVTAMATYKVTLVTP 62

Query: 62  TGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQID 121
           +G+   +C DD YILDAAEE+G+DLPYSCRAG+CSSCAGK+ +GS++Q DQSFL+D Q++
Sbjct: 63  SGSQVIECGDDEYILDAAEEKGMDLPYSCRAGACSSCAGKVTSGSVDQSDQSFLEDGQME 122

Query: 122 EGWVLTCAAYPVSDVTIETHKEEELTA 148
           EGWVLTC AYP  DVTIETHKEEELTA
Sbjct: 123 EGWVLTCIAYPTGDVTIETHKEEELTA 147

[Close]

BLAST of Spo13427.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVB3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_137530 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.700e-77
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1


		  
Query: 1   MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMTMAAYKVTLVTP 60
           MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMTMAAYKVTLVTP
Sbjct: 1   MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMTMAAYKVTLVTP 60

Query: 61  TGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQID 120
           TGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQID
Sbjct: 61  TGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQID 120

Query: 121 EGWVLTCAAYPVSDVTIETHKEEELTA 148
           EGWVLTCAAYPVSDVTIETHKEEELTA
Sbjct: 121 EGWVLTCAAYPVSDVTIETHKEEELTA 147

[Close]

BLAST of Spo13427.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D1X1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g024300 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.200e-59
Identity = 116/141 (82.27%), Postives = 128/141 (90.78%), Query Frame = 1


		  
Query: 8   MMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMT-MAAYKVTLVTPTGNVEF 67
           MMGMA TFVPKPQ P MM AL +NTGR++FGLK GSRGGR+  MA YKVTL+TP+G  EF
Sbjct: 1   MMGMAATFVPKPQLP-MMGALSTNTGRAVFGLKAGSRGGRVVAMATYKVTLITPSGTQEF 60

Query: 68  QCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLT 127
           +CPDDVY+LDAAEE+G+DLPYSCRAGSCSSCAGKLKTGSL+Q DQSFLDDDQI+EGWVLT
Sbjct: 61  ECPDDVYVLDAAEEQGLDLPYSCRAGSCSSCAGKLKTGSLDQSDQSFLDDDQIEEGWVLT 120

Query: 128 CAAYPVSDVTIETHKEEELTA 148
           CAAYP SDVTIETHKEEELTA
Sbjct: 121 CAAYPSSDVTIETHKEEELTA 140

[Close]

BLAST of Spo13427.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S0Y6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_011970 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.900e-50
Identity = 102/147 (69.39%), Postives = 121/147 (82.31%), Query Frame = 1


		  
Query: 2   AATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMT-MAAYKVTLVTP 61
           AA  TTM+  A T V KPQ PPM+ ALP+N G+ +FGLK G RGGR+T MA YKVTLVTP
Sbjct: 3   AAAATTMV--AATLVRKPQTPPMLGALPTNVGQVMFGLKAGGRGGRVTAMATYKVTLVTP 62

Query: 62  TGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQID 121
           +G+   +C DD YILDAAEE+G+DLPYSCRAG+CSSCAGK+ +GS++Q DQSFL+D Q++
Sbjct: 63  SGSQVIECGDDEYILDAAEEKGMDLPYSCRAGACSSCAGKVTSGSVDQSDQSFLEDGQME 122

Query: 122 EGWVLTCAAYPVSDVTIETHKEEELTA 148
           EGWVLTC AYP  DVTIETHKEEELTA
Sbjct: 123 EGWVLTCIAYPTGDVTIETHKEEELTA 147

[Close]

BLAST of Spo13427.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BP15_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g196730 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.200e-48
Identity = 97/146 (66.44%), Postives = 117/146 (80.14%), Query Frame = 1


		  
Query: 1   MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMT-MAAYKVTLVT 60
           MA   TTM   A T VPK Q P M+AA P+N G+++FGLK G+RGGR+T MA YKVTL+T
Sbjct: 1   MAVAATTM---AVTLVPKHQTPGMIAAFPTNVGQAVFGLKAGARGGRITAMATYKVTLIT 60

Query: 61  PTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQI 120
           P G  +  CPD+ YILDAAEE+G+DLPYSCRAG+CSSCAGK+ +GS++Q DQ++LDDDQ+
Sbjct: 61  PEGTKKINCPDNEYILDAAEEQGLDLPYSCRAGACSSCAGKVTSGSVDQSDQNYLDDDQV 120

Query: 121 DEGWVLTCAAYPVSDVTIETHKEEEL 146
            EGWVLTC A P SDVTIETHKE EL
Sbjct: 121 SEGWVLTCIATPTSDVTIETHKEAEL 143

[Close]

BLAST of Spo13427.1 vs. UniProtKB/TrEMBL
Match: W9RQ61_9ROSA (Ferredoxin OS=Morus notabilis GN=L484_016715 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 3.800e-45
Identity = 102/150 (68.00%), Postives = 116/150 (77.33%), Query Frame = 1


		  
Query: 1   MAATTTTMMG--MATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMT-MAAYKVTL 60
           MA TT   +   M +T   +  A   + ALP NTG++LFGLK  SRGGR+T MA+YKV L
Sbjct: 1   MATTTAAALSGTMVSTSFARRHAVSSLRALP-NTGQALFGLK-ASRGGRVTAMASYKVKL 60

Query: 61  VTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDD 120
           +TP G  EF CPDDVYILD AEE GIDLPYSCRAGSCSSCAGK+ +G+L+Q DQSFLDD+
Sbjct: 61  ITPDGEKEFDCPDDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVSGTLDQSDQSFLDDE 120

Query: 121 QIDEGWVLTCAAYPVSDVTIETHKEEELTA 148
           QID GWVLTC AYP  DVTIETHKEEELTA
Sbjct: 121 QIDAGWVLTCVAYPQCDVTIETHKEEELTA 148

[Close]

BLAST of Spo13427.1 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 296.6 bits (758), Expect = 1.500e-79
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1


		  
Query: 1   MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMTMAAYKVTLVTP 60
           MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMTMAAYKVTLVTP
Sbjct: 1   MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMTMAAYKVTLVTP 60

Query: 61  TGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQID 120
           TGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQID
Sbjct: 61  TGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQID 120

Query: 121 EGWVLTCAAYPVSDVTIETHKEEELTA 148
           EGWVLTCAAYPVSDVTIETHKEEELTA
Sbjct: 121 EGWVLTCAAYPVSDVTIETHKEEELTA 147

[Close]

BLAST of Spo13427.1 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.500e-55
Identity = 112/150 (74.67%), Postives = 123/150 (82.00%), Query Frame = 1


		  
Query: 1   MAATTTTMMG--MATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMT-MAAYKVTL 60
           MAATT  + G  M+T F PK   PPM AALP+N GR+LFGLK+ +  GR+T MAAYKVTL
Sbjct: 1   MAATTAALSGATMSTAFAPK--TPPMTAALPTNVGRALFGLKSSASRGRVTAMAAYKVTL 60

Query: 61  VTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDD 120
           VTP G  E +CPDDVYILDAAEE GIDLPYSCRAGSCSSCAGK+ +GS+NQDD SFLDDD
Sbjct: 61  VTPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDD 120

Query: 121 QIDEGWVLTCAAYPVSDVTIETHKEEELTA 148
           QI EGWVLTC AYP  DVTIETHKEEELTA
Sbjct: 121 QIKEGWVLTCVAYPTGDVTIETHKEEELTA 148

[Close]

BLAST of Spo13427.1 vs. ExPASy Swiss-Prot
Match: FER_SILLB (Ferredoxin, chloroplastic OS=Silene latifolia subsp. alba GN=PETF PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.200e-49
Identity = 98/146 (67.12%), Postives = 119/146 (81.51%), Query Frame = 1


		  
Query: 3   ATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMTMAAYKVTLVTP-T 62
           A+T + + ++ + +PK Q P + ++LP+N G++LFGLK GSRG    MA YKVTL+T  +
Sbjct: 2   ASTLSTLSVSASLLPKQQ-PMVASSLPTNMGQALFGLKAGSRGRVTAMATYKVTLITKES 61

Query: 63  GNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDE 122
           G V F CPDDVY+LD AEEEGIDLPYSCRAGSCSSCAGK+  GS++Q DQSFLDDDQI+ 
Sbjct: 62  GTVTFDCPDDVYVLDQAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEA 121

Query: 123 GWVLTCAAYPVSDVTIETHKEEELTA 148
           GWVLTCAAYP +DVTIETHKEEELTA
Sbjct: 122 GWVLTCAAYPSADVTIETHKEEELTA 146

[Close]

BLAST of Spo13427.1 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.900e-46
Identity = 94/147 (63.95%), Postives = 118/147 (80.27%), Query Frame = 1


		  
Query: 1   MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGS-RGGRMT-MAAYKVTLV 60
           MA+T  +   + T+F+ +  AP  + +LPS   +SLFGLK+G+ RGGR+T MA YKV  +
Sbjct: 1   MASTALSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFI 60

Query: 61  TPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQ 120
           TP G +E +C DDVY+LDAAEE GIDLPYSCRAGSCSSCAGK+ +GS++Q DQSFLDD+Q
Sbjct: 61  TPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQ 120

Query: 121 IDEGWVLTCAAYPVSDVTIETHKEEEL 146
           I EG+VLTCAAYP SDVTIETHKEE++
Sbjct: 121 IGEGFVLTCAAYPTSDVTIETHKEEDI 147

[Close]

BLAST of Spo13427.1 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 7.800e-44
Identity = 92/147 (62.59%), Postives = 113/147 (76.87%), Query Frame = 1


		  
Query: 1   MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMTMAAYKVTLVTP 60
           MA+ + TM+  +T+F+P+  A   + A+ SN G +LFGLK+G  G    MA+YKV L+TP
Sbjct: 1   MASISGTMI--STSFLPRKPAVTSLKAI-SNVGEALFGLKSGRNGRITCMASYKVKLITP 60

Query: 61  TGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQID 120
            G +EF+CPDDVYILD AEEEG DLPYSCRAGSCSSCAGK+  GS++Q D +FLD+DQ  
Sbjct: 61  EGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEA 120

Query: 121 EGWVLTCAAYPVSDVTIETHKEEELTA 148
            G+VLTC AYP  DVTIETHKEEELTA
Sbjct: 121 AGFVLTCVAYPKGDVTIETHKEEELTA 144

[Close]

BLAST of Spo13427.1 vs. TAIR (Arabidopsis)
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 186.0 bits (471), Expect = 1.600e-47
Identity = 94/147 (63.95%), Postives = 118/147 (80.27%), Query Frame = 1


		  
Query: 1   MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGS-RGGRMT-MAAYKVTLV 60
           MA+T  +   + T+F+ +  AP  + +LPS   +SLFGLK+G+ RGGR+T MA YKV  +
Sbjct: 1   MASTALSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFI 60

Query: 61  TPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQ 120
           TP G +E +C DDVY+LDAAEE GIDLPYSCRAGSCSSCAGK+ +GS++Q DQSFLDD+Q
Sbjct: 61  TPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQ 120

Query: 121 IDEGWVLTCAAYPVSDVTIETHKEEEL 146
           I EG+VLTCAAYP SDVTIETHKEE++
Sbjct: 121 IGEGFVLTCAAYPTSDVTIETHKEEDI 147

[Close]

BLAST of Spo13427.1 vs. TAIR (Arabidopsis)
Match: AT1G10960.1 (ferredoxin 1)

HSP 1 Score: 173.7 bits (439), Expect = 8.300e-44
Identity = 87/147 (59.18%), Postives = 113/147 (76.87%), Query Frame = 1


		  
Query: 1   MAATTTTMMGMATTFVPKPQAPPMMAALPSNTGRSLFGLKTGS-RGGRMT-MAAYKVTLV 60
           MA+T  +   ++T+F+ + Q P  + +LP    +SLFGLK+ + RGGR+T MA YKV  +
Sbjct: 1   MASTALSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFI 60

Query: 61  TPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQ 120
           TP G  E +C +DVY+LDAAEE G+DLPYSCRAGSCSSCAGK+ +GS++Q DQSFLDD+Q
Sbjct: 61  TPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQ 120

Query: 121 IDEGWVLTCAAYPVSDVTIETHKEEEL 146
           + EG+VLTC AYP SDV IETHKEE +
Sbjct: 121 MSEGYVLTCVAYPTSDVVIETHKEEAI 147

[Close]

BLAST of Spo13427.1 vs. TAIR (Arabidopsis)
Match: AT2G27510.1 (ferredoxin 3)

HSP 1 Score: 133.3 bits (334), Expect = 1.200e-31
Identity = 65/111 (58.56%), Postives = 83/111 (74.77%), Query Frame = 1


		  
Query: 37  FGLKTGSRGGRMTMAA-YKVTLVTPTGNV-EFQCPDDVYILDAAEEEGIDLPYSCRAGSC 96
           FGLK  +  G  TM+A YKV L+ P G   EF+  DD YILDAAEE G+DLPYSCRAG+C
Sbjct: 44  FGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGAC 103

Query: 97  SSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 146
           S+CAG++ +G+++Q D SFL+D  +++G+VLTC AYP SD  I THKE EL
Sbjct: 104 STCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of Spo13427.1 vs. TAIR (Arabidopsis)
Match: AT5G10000.1 (ferredoxin 4)

HSP 1 Score: 97.4 bits (241), Expect = 7.600e-21
Identity = 47/112 (41.96%), Postives = 74/112 (66.07%), Query Frame = 1


		  
Query: 37  FGLKT--GSRGGRMTMAAYKVTLVTPTGNV-EFQCPDDVYILDAAEEEGIDLPYSCRAGS 96
           FGL +  G+ G      + KV L++P G   E +  +D  IL++AE  G++LPYSCR+G+
Sbjct: 36  FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGT 95

Query: 97  CSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 146
           C +C GKL +G ++Q   SFL+++QI +G++LTC A P+ D  + THK+ +L
Sbjct: 96  CGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147

[Close]

BLAST of Spo13427.1 vs. TAIR (Arabidopsis)
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 79.0 bits (193), Expect = 2.800e-15
Identity = 52/140 (37.14%), Postives = 70/140 (50.00%), Query Frame = 1


		  
Query: 12  ATTFVPKPQA------PPMMAALPSNTGRSLFGLKTGSRGGRMTMAAYKVTLVTPTGNVE 71
           +T  +PKP        P   A L + T R  F L TG    R+   AYKV +       E
Sbjct: 11  STISLPKPYLSNSFSFPLRNATLSTTTNRRNF-LTTG----RIIARAYKVVVEHDGKTTE 70

Query: 72  FQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVL 131
            +   D  IL  A + G+D+PY C  G C +C  KL TG+++Q     L DD ++ G+ L
Sbjct: 71  LEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQSG-GMLSDDVVERGYTL 130

Query: 132 TCAAYPVSDVTIETHKEEEL 146
            CA+YP SD  I+   EEEL
Sbjct: 131 LCASYPTSDCHIKMIPEEEL 144

The following BLAST results are available for this feature:

BLAST of Spo13427.1 vs. NCBI nr
BLAST of Spo13427.1 vs. UniProtKB/TrEMBL
BLAST of Spo13427.1 vs. ExPASy Swiss-Prot
BLAST of Spo13427.1 vs. TAIR (Arabidopsis)

BLAST of Spo13427.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|119937\|sp\|P00221.2\|FER1_SPIOL	2.4e-77	100.	RecName: Full=Ferredoxin-1, ch...	[more]
gi\|731315150\|ref\|XP_010690121.1\|	9.9e-63	83.1	PREDICTED: ferredoxin-1, chlor...	[more]
gi\|870867395\|gb\|KMT18264.1\|	1.7e-59	82.2	hypothetical protein BVRB_2g02...	[more]
gi\|3023743\|sp\|O04683.1\|FER1_MESCR	2.4e-53	74.6	RecName: Full=Ferredoxin-1, ch...	[more]
gi\|902237551\|gb\|KNA24844.1\|	5.6e-50	69.3	hypothetical protein SOVF_0119...	[more]

BLAST of Spo13427.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QVB3_SPIOL	1.7e-77	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8D1X1_BETVU	1.2e-59	82.2	Uncharacterized protein OS=Bet...	[more]
A0A0K9S0Y6_SPIOL	3.9e-50	69.3	Uncharacterized protein OS=Spi...	[more]
A0A0J8BP15_BETVU	6.2e-48	66.4	Uncharacterized protein OS=Bet...	[more]
W9RQ61_9ROSA	3.8e-45	68.0	Ferredoxin OS=Morus notabilis ...	[more]

BLAST of Spo13427.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
FER1_SPIOL	1.5e-79	100.	Ferredoxin-1, chloroplastic OS...	[more]
FER1_MESCR	1.5e-55	74.6	Ferredoxin-1, chloroplastic OS...	[more]
FER_SILLB	1.2e-49	67.1	Ferredoxin, chloroplastic OS=S...	[more]
FER2_ARATH	2.9e-46	63.9	Ferredoxin-2, chloroplastic OS...	[more]
FER1_SOLLC	7.8e-44	62.5	Ferredoxin-1, chloroplastic OS...	[more]

BLAST of Spo13427.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT1G60950.1	1.6e-47	63.9	2Fe-2S ferredoxin-like superfa...	[more]
AT1G10960.1	8.3e-44	59.1	ferredoxin 1	[more]
AT2G27510.1	1.2e-31	58.5	ferredoxin 3	[more]
AT5G10000.1	7.6e-21	41.9	ferredoxin 4	[more]
AT4G14890.1	2.8e-15	37.1	2Fe-2S ferredoxin-like superfa...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 63..131 score: 2.6
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROFILE	PS51085	2FE2S_FER_2	coord: 53..143 score: 12
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	unknown	SSF54292	2Fe-2S ferredoxin-like	coord: 47..144 score: 2.88
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 89..97 scor
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAMs	TIGR02008	TIGR02008	coord: 51..146 score: 3.2
IPR012675	Beta-grasp domain	GENE3D	3.10.20.30		coord: 36..146 score: 3.1
None	No IPR available	PANTHER	PTHR19370	NADH-CYTOCHROME B5 REDUCTASE	coord: 8..146 score: 1.2
None	No IPR available	PANTHER	PTHR19370:SF120	FERREDOXIN-1, CHLOROPLASTIC-RELATED	coord: 8..146 score: 1.2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0022900	electron transport chain
biological_process	GO:0009744	response to sucrose
biological_process	GO:0009643	photosynthetic acclimation
biological_process	GO:0010114	response to red light
biological_process	GO:0010218	response to far red light
biological_process	GO:0009637	response to blue light
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0051536	iron-sulfur cluster binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo23413	0.67	Barchart \| Table
Spo26994	0.66	Barchart \| Table