Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATATTCTCATATTCTCTTTGAAAATATCAAACTTACATTTTTACATAATGCTCTGTATTTGATTCTTTATCCTCTAATGAAGAACATGCACCTTCATCTTTCATGACAAAGCATTTCTCTTTTCCCCCTTTTTTATTTCACCAATTTGCACCAAACCATATTATATGTCCCTTTCCTTTTTTCCCCCCACTTTATTATACCACCTTTTTCTTTATTTCACCCTTCATTTTCATTGTTTTTGTACTTGTATATGTTCTTAAATCATCAACATTTGATTGATTTTATAAACAAAAGTATATTACAACAAAATCATTTTACAAAATCCCAAAAACAAAAAACAAAAACAAAAAAAATCAAGTTTCTTCCAAAAACCCACCAAAACCCCTCATTTCATTATGGCTAAACTTGATTCCATTTACATATTCTTGCTTCTATCTTCTCTAATCATCTCCAAATCCGGTAAAGTACATTGTTATTTCTACAATTAGCAACTTAATTCATTGTTTCAACCTTCAAATTTTACTAAAAATGATTACTTTTTCATTTTGTTTGCAGGTGGGATTGAATCAGAAACACAAAGAAAACTACAAAAAGTTGTCAGAAGATTGGATGATAATACAATAACAAACCCAGCAAATTTCCCACCTTATACACCCACACCAACAATTATTACTGTCCCAGCTTCAAATCCCACCACCCCAGTAAACGACCCGATTCCCACAACACCACCAGCAACCACCACAGTCCCCTCCACAACCACCCCAGCTCCGCCCATCACTAACCCTGCTAACCCGGGAAATGTGCCGGTGTCGAACCCGCCGACAGATGGGTCGGGTACGGCGGGGGGAAGTTGGTGTATTGCTAATAGTGGTGCATCAGAGAGTGCTTTACAGAGTGGATTAGATTATGCTTGTGGGAGTGGATTAGCTGATTGTTCAACAATTCAAGATGGGGGTAGTTGTTATAATCCTAATAGTCTTGCTAATCATGCTTCTTATGCGTTTAATAGTTACTTTCAGAAGAATCCTTCGTCTACTAGTTGTGATTTTGGGGGTGCTGCTGTTATGGTGAACACTAATCCCAGTAAGTTTCTTGCTATTGGGTTCTTTTTTCTTTTTTGGTTTGTTAAGATTTGAATCATGATTTTGCATCATGAGTTTTCTACTGCCAGTGTCGATGCTAACTAGCTTAGTTGATCTATTGGGGGTCGTTACAAATTAGGTCGATGCCAACTAGCTTAAGATGTGTTCATTCACCTGATTTTTTTAAACTTATTTTAGTTATAAATTATATTAGGGTAACGTCATCTTTCATGAACTTATCTTGAACTTAATTTTGCGGAAATAAGTGGAAATAAGTCGAAAGGTCGTAGATAAAATCTCGTCTACATCAGTCCCTTTTGTGACACCAAAAGTAAAATGAGTGTCAATGAATTGTAGTAAGTTCCTAGCTAAAGGGTTTTGTCAGTGCCTTTTGTGACACCAAAAGTAAAATGAGTGCCAATGAATTGTAGTAAGTTCCTAGCTAAAGGGTTTTATTTTTGATAATTTTTGATAATTAAGAGATGGGTCATGATTTTTGCATCCTTTATTAGTGTTTACTAATCTTAGTAAGTTTTCAGCTAAAGGGTTCTTTTTATTATTTTAAGAGATGAATCATGATTTTTGCATCATTTATAAGTGTCTACTAATCAAGTTTTTAGCTAAATGGTGTTTGTTTTTTAAGAGATGAATCATTAATCTTGTATCAATTATGAGAGTTCAGTAATATCCTAGTATGTTTCTGAATTGTGGGAATTTGGGTATGCAGGTACTGGTTCTTGTATTTACCCATCATCAGCAACTGGAACCGGAACAGGAGCTGGAGGAGGAGCAGCTATGCCTTTATCGACAACTCCTCCGACAACAGAAACACCTTCCTCGACATTTCCAACACCAACAACATCCTCACCTGGGACTACAGGATTACCATATGGGAGTCCAGCATATGGGTATGCTATCTTATCCACTAACTAGTACTTATGTTGAAGGATTCTTGGGTGTCTTGTTTGTTACTTGTTAGCCTCAGCATAAGAATTTTCTGAACATTACATCAGCCGTCATTCTTTCGTCGTTAAAGTTCATTTGGAATAGTTTATAAGGAGGCTGGAGATGTTAAAGCAGTATATGCTCAATTCTTGCAGAAGTGGGAGACTCTGTTGAGGTATTGGGATGATGCTGATGTTGATGGAAAGTAGAATAAAACTTGCATAGAGTTTTCTTGTCAGTTTCTTTGATGTGTTTCTGATTCCTATGCAAAAGCTAAAACTGAACAAACGCCACAGTTTTGAGTGGGAAGGGATAATCCATGGCTTCATAATATCGATTGAATGACAATTACGTGGCTAGATAAACACGAAGCATGCAATAATCTTCAGTTCTGATCTATAATAGTAGGTTCCCTTTCTAAAGTAAAGTGTATTAACACAACTTTCAACCTAGTTAAAATCCTAATGTGTAGGTATCTAAAAAATGCCCCATCAAAGATCCCATATTTATTATGTTTGTGTGTGTGTTTTTCTTTTCATTTTTCCGAGTGTTAGGGTAAGGAATTCATACAAGGGGTGATAAATCCATCTTGTGCAAGAAAAAACAATCTGGGGTTGTATTTTTGGATATATTTTTTTCGTAATTTCATGACTAAAATGGGTGGAATTTCTTGCAAAAGAATATCCTTTTAAGATTGGATGGTTTCCCAATCTCTGAGATTGGTTATCATGACTTGAATTCATAAGGTTGAAGTATTAAACTTGTTCTCTTTTTATATGGTTGCAGCAACAACTATGGATCTCCACCGTCATTAACAACTCCAAGCAACCCGAATTCACTATTCCCTGCAAGTTACGGGCCTGATAGCCCACCTCTTGGAAACACTCTTCCTGCAGGTACAGCTAGTCTGCGACCCGACATCAGTTTCATCATCCCGGTAGTTTTCTACTTGACAGGAAAACTAATTCTGGGTACATGAGTTTGATTTCATTTCAGAAGGTTAA ATATTCTCATATTCTCTTTGAAAATATCAAACTTACATTTTTACATAATGCTCTGTATTTGATTCTTTATCCTCTAATGAAGAACATGCACCTTCATCTTTCATGACAAAGCATTTCTCTTTTCCCCCTTTTTTATTTCACCAATTTGCACCAAACCATATTATATGTCCCTTTCCTTTTTTCCCCCCACTTTATTATACCACCTTTTTCTTTATTTCACCCTTCATTTTCATTGTTTTTGTACTTGTATATGTTCTTAAATCATCAACATTTGATTGATTTTATAAACAAAAGTATATTACAACAAAATCATTTTACAAAATCCCAAAAACAAAAAACAAAAACAAAAAAAATCAAGTTTCTTCCAAAAACCCACCAAAACCCCTCATTTCATTATGGCTAAACTTGATTCCATTTACATATTCTTGCTTCTATCTTCTCTAATCATCTCCAAATCCGGTGGGATTGAATCAGAAACACAAAGAAAACTACAAAAAGTTGTCAGAAGATTGGATGATAATACAATAACAAACCCAGCAAATTTCCCACCTTATACACCCACACCAACAATTATTACTGTCCCAGCTTCAAATCCCACCACCCCAGTAAACGACCCGATTCCCACAACACCACCAGCAACCACCACAGTCCCCTCCACAACCACCCCAGCTCCGCCCATCACTAACCCTGCTAACCCGGGAAATGTGCCGGTGTCGAACCCGCCGACAGATGGGTCGGGTACGGCGGGGGGAAGTTGGTGTATTGCTAATAGTGGTGCATCAGAGAGTGCTTTACAGAGTGGATTAGATTATGCTTGTGGGAGTGGATTAGCTGATTGTTCAACAATTCAAGATGGGGGTAGTTGTTATAATCCTAATAGTCTTGCTAATCATGCTTCTTATGCGTTTAATAGTTACTTTCAGAAGAATCCTTCGTCTACTAGTTGTGATTTTGGGGGTGCTGCTGTTATGGTGAACACTAATCCCAGTACTGGTTCTTGTATTTACCCATCATCAGCAACTGGAACCGGAACAGGAGCTGGAGGAGGAGCAGCTATGCCTTTATCGACAACTCCTCCGACAACAGAAACACCTTCCTCGACATTTCCAACACCAACAACATCCTCACCTGGGACTACAGGATTACCATATGGGAGTCCAGCATATGGCAACAACTATGGATCTCCACCGTCATTAACAACTCCAAGCAACCCGAATTCACTATTCCCTGCAAGTTACGGGCCTGATAGCCCACCTCTTGGAAACACTCTTCCTGCAGAAGGTTAA ATGGCTAAACTTGATTCCATTTACATATTCTTGCTTCTATCTTCTCTAATCATCTCCAAATCCGGTGGGATTGAATCAGAAACACAAAGAAAACTACAAAAAGTTGTCAGAAGATTGGATGATAATACAATAACAAACCCAGCAAATTTCCCACCTTATACACCCACACCAACAATTATTACTGTCCCAGCTTCAAATCCCACCACCCCAGTAAACGACCCGATTCCCACAACACCACCAGCAACCACCACAGTCCCCTCCACAACCACCCCAGCTCCGCCCATCACTAACCCTGCTAACCCGGGAAATGTGCCGGTGTCGAACCCGCCGACAGATGGGTCGGGTACGGCGGGGGGAAGTTGGTGTATTGCTAATAGTGGTGCATCAGAGAGTGCTTTACAGAGTGGATTAGATTATGCTTGTGGGAGTGGATTAGCTGATTGTTCAACAATTCAAGATGGGGGTAGTTGTTATAATCCTAATAGTCTTGCTAATCATGCTTCTTATGCGTTTAATAGTTACTTTCAGAAGAATCCTTCGTCTACTAGTTGTGATTTTGGGGGTGCTGCTGTTATGGTGAACACTAATCCCAGTACTGGTTCTTGTATTTACCCATCATCAGCAACTGGAACCGGAACAGGAGCTGGAGGAGGAGCAGCTATGCCTTTATCGACAACTCCTCCGACAACAGAAACACCTTCCTCGACATTTCCAACACCAACAACATCCTCACCTGGGACTACAGGATTACCATATGGGAGTCCAGCATATGGCAACAACTATGGATCTCCACCGTCATTAACAACTCCAAGCAACCCGAATTCACTATTCCCTGCAAGTTACGGGCCTGATAGCCCACCTCTTGGAAACACTCTTCCTGCAGAAGGTTAA MAKLDSIYIFLLLSSLIISKSGGIESETQRKLQKVVRRLDDNTITNPANFPPYTPTPTIITVPASNPTTPVNDPIPTTPPATTTVPSTTTPAPPITNPANPGNVPVSNPPTDGSGTAGGSWCIANSGASESALQSGLDYACGSGLADCSTIQDGGSCYNPNSLANHASYAFNSYFQKNPSSTSCDFGGAAVMVNTNPSTGSCIYPSSATGTGTGAGGGAAMPLSTTPPTTETPSSTFPTPTTSSPGTTGLPYGSPAYGNNYGSPPSLTTPSNPNSLFPASYGPDSPPLGNTLPAEG Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo13322.1 vs. NCBI nr
Match: gi|902213634|gb|KNA17313.1| (hypothetical protein SOVF_081040 [Spinacia oleracea]) HSP 1 Score: 553.9 bits (1426), Expect = 1.700e-154 Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 1
BLAST of Spo13322.1 vs. NCBI nr
Match: gi|731327395|ref|XP_010674501.1| (PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 4 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 364.4 bits (934), Expect = 1.900e-97 Identity = 217/317 (68.45%), Postives = 244/317 (76.97%), Query Frame = 1
BLAST of Spo13322.1 vs. NCBI nr
Match: gi|870862946|gb|KMT14134.1| (hypothetical protein BVRB_4g079560 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 341.7 bits (875), Expect = 1.300e-90 Identity = 192/251 (76.49%), Postives = 211/251 (84.06%), Query Frame = 1
BLAST of Spo13322.1 vs. NCBI nr
Match: gi|659099274|ref|XP_008450517.1| (PREDICTED: flocculation protein FLO11 [Cucumis melo]) HSP 1 Score: 186.0 bits (471), Expect = 9.300e-44 Identity = 152/335 (45.37%), Postives = 189/335 (56.42%), Query Frame = 1
BLAST of Spo13322.1 vs. NCBI nr
Match: gi|641822300|gb|KDO41833.1| (hypothetical protein CISIN_1g006966mg [Citrus sinensis]) HSP 1 Score: 185.3 bits (469), Expect = 1.600e-43 Identity = 158/325 (48.62%), Postives = 185/325 (56.92%), Query Frame = 1
BLAST of Spo13322.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCV3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_081040 PE=4 SV=1) HSP 1 Score: 553.9 bits (1426), Expect = 1.200e-154 Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 1
BLAST of Spo13322.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CQ50_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g079560 PE=4 SV=1) HSP 1 Score: 341.7 bits (875), Expect = 9.200e-91 Identity = 192/251 (76.49%), Postives = 211/251 (84.06%), Query Frame = 1
BLAST of Spo13322.1 vs. UniProtKB/TrEMBL
Match: A0A067DG70_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006966mg PE=4 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 1.100e-43 Identity = 158/325 (48.62%), Postives = 185/325 (56.92%), Query Frame = 1
BLAST of Spo13322.1 vs. UniProtKB/TrEMBL
Match: V4SRG7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011295mg PE=4 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 3.200e-43 Identity = 156/325 (48.00%), Postives = 184/325 (56.62%), Query Frame = 1
BLAST of Spo13322.1 vs. UniProtKB/TrEMBL
Match: A0A0A0M1B6_CUCSA (Hydrolase, hydrolyzing O-glycosyl compounds OS=Cucumis sativus GN=Csa_1G560700 PE=4 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 4.200e-43 Identity = 150/335 (44.78%), Postives = 187/335 (55.82%), Query Frame = 1
BLAST of Spo13322.1 vs. ExPASy Swiss-Prot
Match: PDCB3_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana GN=PDCB3 PE=1 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 9.300e-20 Identity = 68/163 (41.72%), Postives = 91/163 (55.83%), Query Frame = 1
BLAST of Spo13322.1 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2) HSP 1 Score: 97.4 bits (241), Expect = 2.700e-19 Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 1
BLAST of Spo13322.1 vs. ExPASy Swiss-Prot
Match: PDCB4_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 4 OS=Arabidopsis thaliana GN=PDCB4 PE=1 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 5.100e-18 Identity = 77/172 (44.77%), Postives = 101/172 (58.72%), Query Frame = 1
BLAST of Spo13322.1 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3) HSP 1 Score: 90.9 bits (224), Expect = 2.500e-17 Identity = 57/127 (44.88%), Postives = 76/127 (59.84%), Query Frame = 1
BLAST of Spo13322.1 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 7.400e-17 Identity = 56/123 (45.53%), Postives = 73/123 (59.35%), Query Frame = 1
BLAST of Spo13322.1 vs. TAIR (Arabidopsis)
Match: AT1G09460.1 (Carbohydrate-binding X8 domain superfamily protein) HSP 1 Score: 146.0 bits (367), Expect = 3.700e-35 Identity = 114/238 (47.90%), Postives = 139/238 (58.40%), Query Frame = 1
BLAST of Spo13322.1 vs. TAIR (Arabidopsis)
Match: AT1G29380.1 (Carbohydrate-binding X8 domain superfamily protein) HSP 1 Score: 119.8 bits (299), Expect = 2.900e-27 Identity = 76/163 (46.63%), Postives = 101/163 (61.96%), Query Frame = 1
BLAST of Spo13322.1 vs. TAIR (Arabidopsis)
Match: AT2G30933.1 (Carbohydrate-binding X8 domain superfamily protein) HSP 1 Score: 107.5 bits (267), Expect = 1.500e-23 Identity = 81/185 (43.78%), Postives = 108/185 (58.38%), Query Frame = 1
BLAST of Spo13322.1 vs. TAIR (Arabidopsis)
Match: AT1G18650.1 (plasmodesmata callose-binding protein 3) HSP 1 Score: 99.0 bits (245), Expect = 5.300e-21 Identity = 68/163 (41.72%), Postives = 91/163 (55.83%), Query Frame = 1
BLAST of Spo13322.1 vs. TAIR (Arabidopsis)
Match: AT2G05790.1 (O-Glycosyl hydrolases family 17 protein) HSP 1 Score: 97.1 bits (240), Expect = 2.000e-20 Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo13322.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo13322.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo13322.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo13322.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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