Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGTTAAACAGCCAGGTAGTTGTAGCCGTAGCAAACGCATCAGCAAGCGTATGCCAATACATAGCCTGCAATCCCGAGCATTTGAGCAGCGACCAAGTCCTTCATCTTCTCTTCTGCTTCCCTTTTCAGCAAATTCGTCGCCTTTCTCTTTGCCTCTCTGCTTTCTTCTGCTTCCCTTATTCCTCCGATCCCCTTTTCTACCCTTCTCATTCTTCGTCTTCTTCTGATGATTCTCTCTCCTCGGCTGACCCCACTTACGATTTTCACTCCGATTGA ATGGTGTTAAACAGCCAGGTAGTTGTAGCCGTAGCAAACGCATCAGCAAGCGTATGCCAATACATAGCCTGCAATCCCGAGCATTTGAGCAGCGACCAAGTCCTTCATCTTCTCTTCTGCTTCCCTTTTCAGCAAATTCGTCGCCTTTCTCTTTGCCTCTCTGCTTTCTTCTGCTTCCCTTATTCCTCCGATCCCCTTTTCTACCCTTCTCATTCTTCGTCTTCTTCTGATGATTCTCTCTCCTCGGCTGACCCCACTTACGATTTTCACTCCGATTGA ATGGTGTTAAACAGCCAGGTAGTTGTAGCCGTAGCAAACGCATCAGCAAGCGTATGCCAATACATAGCCTGCAATCCCGAGCATTTGAGCAGCGACCAAGTCCTTCATCTTCTCTTCTGCTTCCCTTTTCAGCAAATTCGTCGCCTTTCTCTTTGCCTCTCTGCTTTCTTCTGCTTCCCTTATTCCTCCGATCCCCTTTTCTACCCTTCTCATTCTTCGTCTTCTTCTGATGATTCTCTCTCCTCGGCTGACCCCACTTACGATTTTCACTCCGATTGA MVLNSQVVVAVANASASVCQYIACNPEHLSSDQVLHLLFCFPFQQIRRLSLCLSAFFCFPYSSDPLFYPSHSSSSSDDSLSSADPTYDFHSD Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo13193.1 vs. NCBI nr
Match: gi|902210780|gb|KNA16530.1| (hypothetical protein SOVF_088180 [Spinacia oleracea]) HSP 1 Score: 179.5 bits (454), Expect = 2.700e-42 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1
BLAST of Spo13193.1 vs. NCBI nr
Match: gi|870864527|gb|KMT15622.1| (hypothetical protein BVRB_3g056140 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 141.4 bits (355), Expect = 8.100e-31 Identity = 80/97 (82.47%), Postives = 83/97 (85.57%), Query Frame = 1
BLAST of Spo13193.1 vs. NCBI nr
Match: gi|604336146|gb|EYU39992.1| (hypothetical protein MIMGU_mgv1a017913mg [Erythranthe guttata]) HSP 1 Score: 102.8 bits (255), Expect = 3.200e-19 Identity = 57/92 (61.96%), Postives = 65/92 (70.65%), Query Frame = 1
BLAST of Spo13193.1 vs. NCBI nr
Match: gi|698503432|ref|XP_009797310.1| (PREDICTED: uncharacterized protein LOC104243757 [Nicotiana sylvestris]) HSP 1 Score: 96.7 bits (239), Expect = 2.300e-17 Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 1
BLAST of Spo13193.1 vs. NCBI nr
Match: gi|697181005|ref|XP_009599486.1| (PREDICTED: uncharacterized protein LOC104095140 [Nicotiana tomentosiformis]) HSP 1 Score: 96.3 bits (238), Expect = 3.000e-17 Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 1
BLAST of Spo13193.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAL7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_088180 PE=4 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 1.900e-42 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1
BLAST of Spo13193.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CPX8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g056140 PE=4 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 5.700e-31 Identity = 80/97 (82.47%), Postives = 83/97 (85.57%), Query Frame = 1
BLAST of Spo13193.1 vs. UniProtKB/TrEMBL
Match: A0A022RHX9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017913mg PE=4 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 2.200e-19 Identity = 57/92 (61.96%), Postives = 65/92 (70.65%), Query Frame = 1
BLAST of Spo13193.1 vs. UniProtKB/TrEMBL
Match: K4D299_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 4.200e-18 Identity = 55/91 (60.44%), Postives = 64/91 (70.33%), Query Frame = 1
BLAST of Spo13193.1 vs. UniProtKB/TrEMBL
Match: M1AFE5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008382 PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 4.200e-18 Identity = 53/84 (63.10%), Postives = 62/84 (73.81%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo13193.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo13193.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo13193.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo13193.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 0
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|