Spo13087 (gene)

Overview
NameSpo13087
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01377 : 35645 .. 37088 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGATCCTGAAATTTGCGTTGGATGGACATGGGTTATTAAACTGTAAGTTCTGTGTATCTTAGTTATGGTCTAAAAAGAGTGAACGTTGAAATTACAAAAGAGGTGAATAGGAGCTTTATGATTGGCTTATCAAATTGGTAGTTATAAAACATTGTTGATTGAGAATAATTTCCATATTTAAGGGTATTGAAAGGGATTTAGTAGGTAAGCAGATTTGAAAGTAAGAGGTGATTATAATAACGAAAGATCTCCTCTCAAAAAAAAAGGAAAAAACAGATCTATTTATTTATTCATTTCAATTTTGGACATGAATTTTTTTACATCCTTCTTGTAGTTTTTATTATCTGGTTCCAAATGCCTATATGCATTGTCCTTTTCTCAGGAATCTGAAATACGAATTCAGTGCTTAGTACTTTTTATTTGATTTTATTGGGGATGTTGTCTGTCACAAGCTCTTATACAAACTCTTTGACTTTGCTTGTAGACTATTAGTATCATTTTATTTTTCCTATAACCATCTCTGTATGGCCTCTTTGATTTGAAATTTCAGTGTGAGTAGTGTTTGTAATACATCTTAGGTAAGTATCAAGTGGCATAGTAAAATCCACAATTGCTTATGACTCGGGGAAAATATTTTGGGTTACTACTAACCTTAACGGAATGATTGTTTGTGTGGCTTTGGGGAGCTGCTCTTTGCCACACTTTTGTGTGATTGGCACTCTCTCAGTCTTACCTTGTAGGTTTCCTTAGATTCATTTAGGCTTATGTTTTTCTTCTTATGCGCTACTCTTATAGGGTTATATTACGGCCGCACTTATTCATCAAGTATACTTATTGAACATGTATTAGGTTTTATGATAAGAAGACGATGTTTCTGTTATAGCTCGATACATCTCTACGATGGGAAAGGGTTATCAATAGATTTCCACCTTTCATGGACATAAAGGATGAATATAAATTGTTAGAAACACATGATGCATCATTACAGTATTAGACATGATGTGGGTTAAACCCTTCAACTTAAAATAAGAATTAGAGAGGTTAATATTCTGATCGGGATACTTCTACGAGAGTTACTTTGATGAGACAGTTTTGGTGTTGGTCTTCTTATGGAGTTTTGGGTAGTGGTAGTTTGTTTGTTTTTTTCTTTATTTATTATTCTGCCAACTTGTCTCTAACATAGTCTTTCCAATATTTGGAAATAAGTGTTCAGAGGATATTGTCTCACATGTGATTTTATTTATTTTAGATTCAAGATTCACCCAACAGGAACTTCTAGCTTGCAAACCAATCTTAACTCCTCGTTGGGTATGAAAGAATTGATTTCTGCTCTTTTGTTGTATTATTTTTTTCTCTTACTTTTGTCACTCCATGTGTATTTCTATGCAACTAGCCATTTACAAGCACCAAAACTAGCCATTCACCCCGCCTATTTTTAA

mRNA sequence

ATGATTGATCCTGAAATTTGCGTTGGATGGACATGGGTTATTAAACTATTCAAGATTCACCCAACAGGAACTTCTAGCTTGCAAACCAATCTTAACTCCTCGTTGGGTATGAAAGAATTGATTTCTGCTCTTTTGTTGTATTATTTTTTTCTCTTACTTTTGTCACTCCATGTGTATTTCTATGCAACTAGCCATTTACAAGCACCAAAACTAGCCATTCACCCCGCCTATTTTTAA

Coding sequence (CDS)

ATGATTGATCCTGAAATTTGCGTTGGATGGACATGGGTTATTAAACTATTCAAGATTCACCCAACAGGAACTTCTAGCTTGCAAACCAATCTTAACTCCTCGTTGGGTATGAAAGAATTGATTTCTGCTCTTTTGTTGTATTATTTTTTTCTCTTACTTTTGTCACTCCATGTGTATTTCTATGCAACTAGCCATTTACAAGCACCAAAACTAGCCATTCACCCCGCCTATTTTTAA

Protein sequence

MIDPEICVGWTWVIKLFKIHPTGTSSLQTNLNSSLGMKELISALLLYYFFLLLLSLHVYFYATSHLQAPKLAIHPAYF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo13087.1Spo13087.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo13087.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo13087.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo13087.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo13087.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0010200 response to chitin
biological_process GO:0051302 regulation of cell division
biological_process GO:0032875 regulation of DNA endoreduplication
biological_process GO:0051510 regulation of unidimensional cell growth
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0052542 defense response by callose deposition
biological_process GO:0030968 endoplasmic reticulum unfolded protein response
biological_process GO:0043069 negative regulation of programmed cell death
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0016049 cell growth
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0000902 cell morphogenesis
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0061025 membrane fusion
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0032482 Rab protein signal transduction
biological_process GO:0006457 protein folding
biological_process GO:0034976 response to endoplasmic reticulum stress
biological_process GO:0009408 response to heat
biological_process GO:0009644 response to high light intensity
biological_process GO:0042542 response to hydrogen peroxide
biological_process GO:0016567 protein ubiquitination
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0034645 cellular macromolecule biosynthetic process
biological_process GO:0009987 cellular process
biological_process GO:0006189 'de novo' IMP biosynthetic process
biological_process GO:0008152 metabolic process
biological_process GO:0009113 purine nucleobase biosynthetic process
biological_process GO:0007276 gamete generation
biological_process GO:0007267 cell-cell signaling
biological_process GO:0009561 megagametogenesis
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0005773 vacuole
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0008287 protein serine/threonine phosphatase complex
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005819 spindle
cellular_component GO:0031461 cullin-RING ubiquitin ligase complex
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0004637 phosphoribosylamine-glycine ligase activity
molecular_function GO:0003924 GTPase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0008022 protein C-terminus binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0019003 GDP binding
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0004722 protein serine/threonine phosphatase activity
molecular_function GO:0016874 ligase activity
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0005515 protein binding
RNA-Seq Expression