Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TATATTATTTGTGTAAACAAACATATTACTCCGTAAAATAATGTAGGACCGAATGGAAAGTTGTCCAATATGAGTATCCTAACATTATTGAGATAGTGAGCCCACCTTCAACGAGACATTGCACTGAGACGGCTAGCTTGGCCGCCTCTAGTCCACTTGCAAATTATTCGTACGTGCATTATTGTTTTGCACTAAGCTACACACTTGGACATCTTTCTATATATAGAATTAAAAACACTTGGACATCAACCACAAAACTTCCCCTTTAATTCCCATTCCAAATTAAGTAGCCAACAAAACCATGCAAGCTCCTGCACTAAAAAGCTCTCTCCTTCTCTTCACCCTCTTGCTATTCCTTTCATCCCTCAACCTAGCTTCCTCCGTATGTAACCCAAATGACAAAAAGGCCCTCCTCGATATCAAACACCATTTTAACAATGTGCCCGCCTTCAACACTTGGGATCCCAATACTGATTGTTGCAACAATTGGTCAGGCGTTGTTAGTTGTGATAAACACGGCCATGTTACTACACTCGATTTGTCCTCTTACAACCTTACCGGCTCAATCCCTTCATCACTCGGTCAGTTACGCAAGCTACAAACAGCTAAACCTTCACACTAACAACCTCTCTGGTCATATCCCATCCTTTTTCGGATACATGAATAACTTACAATTTCTTTACCTTTACGACAATAAGCTAACCGGCCCTGTTCCATCTTCCCTCTCTCGACTTCCCAAAATATCAGCGATCAACCTTGGCATAAACCACCTCACAGGGTCCATCCCCAAGTCATTCGGCTATTTCAAAAGCACTCTAATAAGCTCATTAACCCTCTATTTTAACAACTTATCCGGACCGATTCCACGGTCACTAGGAAAGGCGAACATTCAAGTGATAAACCTTAATAACAACCAGTTCACAGGGGATGCCTCGTTTTTGTTTTCGAGGGATAAGACAGCGTTATTCAACATAGACATAAGTAACAATCTCCTTCATTTCGATTTTTCAAACGTTGATCTTCCTCAAAATTTGGCCTACATCGACATAACCCATAACAACATTTATGGTGCTCTTCCTAAACGACTTGGGCAGTTGCCGTTGAAAAGCATTGATGTGAGCTTCAATCACCTTTGTGGGAAGATACCAACTGGTAGGCGATTAAAGCAGTTTAGCCCTACACTGTTTTCCCATAACAACTGCTTGTGCGGTCCACCGTTAGCACCTTGCCATTAGTAACTTATAATTGTCTTGTAATTCTTCCATTTATTTTTACTTGCAACATTTCGACTTTTCAGTAGTTTGTACAAGCTAAGGAGGAAGACGTGAACCGGGAGTTTTTCTTGCATAAATTCATATTATTGTTTTGCGATATCTATCTATATTTAATATATTAAAAGGCGTTTTAAAGAACGTATACGTGTCACGTAGACCTCTCCTTATTACGCCACGTCACCACTAATTAGCATCATAACATGTCATTACAACCAAAAAACATCTAACAAGGATCGAACACCAAACCTCTTTGTTAAAAGTTGCCCTTCTTACCATCTTAACCAACTACAACTTATGTAATATCTTTCCATATAAGCCTATATATTCTTTTTACAATAAACAATACATTGAATAAAAGTGAATGCAAAAAAATGAATGATTACTTAATTCATAAATGTACAATTATTACTTTGTTTATATTTTTGGATGTGGGGTTTAATCGGGGAGGTTGTTGATCGGCCAATAATCTTATGTTACCACAGTAATTTGATGATGACACCATCTCTACGTGCACATATTTTTAAAAAAACCCGAATAAAAGTCAAAACCCGGGGCAACGCCCGGGTTATATACTAGTTATTATTTAATATTTGATCAATTTTCTTAACTTTCATGTCAAATTTCCATTTCTGAAACTAATAAAGCTGTTTTTTTTTTGTCTCTTAATCACTATGATACATTTGATTGCTCAATTGATCTTGCACGTTCCCAATATACGTTTAACGTTAATCTACAACCTTTTAAAAGTGAGAACCTTAGTTTAACTATTCATGTAATAGTATTATTCCTAAAAAGCCCTTCGTTTTATGCCCATTAACATATTTGCCCTTTCTAAACTGTCCACACGTGTCTTCCTCTCTCTCTCACATGACTGCCTTCCTCTTTCTCACCCATGACCTACTTCTGTGTTCCTTACTCTCTCCCTTGCTTCTCCTTCACCTCCATACTCTGCTCTCAAAATCCGCCCTCTTTTTCATCCTCTCTTTGTTTTGCTATTGTCATCTAGGGTCTGTTATCGGGTTTGCCTTTCTTTCTCCCTCGCTTCTCATTCACCTCCAACCTTTTCTCTGCAGATTTGTTGTTCTTGGAGGCGTGGCCTTCTTTTTCGTTGTCGACATCTTCTGTTTTTGCTCGGTGGAAACCTACCGGAGATGTGGACCCAATGCATCGGGTCGCGTGCGTTGCGTTAGGAGTCTCCCAGAAATCATATCTCGGGAGCGTGCCTGGGAGATTTCCTACTGTTTTTGGGGAACTTTTTTTTCCCGGGAATCGGTTTGGTATCTGGGCCTTGGTGCGTTTCTCTTCCGTCCTTTCTTGTGATTTACTTTTTATTTATCATCTGCAATTGTGGTTTACCCTGGGTTCGTTTATTGCTTAAACATGTTTTCTTGTTTCTTTTGTCTTAACATTGGCCCAAATTGTTCCAGATCTCTATGAATACGATGCCATTTTTTTCTTTCCAATTGCCTGAGTTCATTAGCGTTTTCCAGATCTATTTGCTTTAGTTACTAATTTTATTACATCTTCTTGCTGATCTTGTATGTGGAAGGATGATTTCTTGGCCAACACCAAATTGTAGTTAAGTGCTTGATTAAGTGGTCTGGATTTTGTTAGATTTACATTTTGTTCCTTCCTGATTTTAGGTTTATGGTCATTTTCATTTATGTTCCTAATTTTAGGTTTATGGTCATTTAGGTTTAATAGCGAGTTCATTCTGCTATTTCTAATCTGTTAGTTTTAGGTTTATGGTCATTTAGATGCTTGGTTTCGATTTAAAATGGTCGTCATCTAAATGCTCGATTTCAGTTTTTGTGGCATCTAAATGCTCAGATTCAGTTTTTAGATGACCCCGAGCATTTAGGTGGCGTTTAAAACTGAAATGCTCGGTGTCATCTAGATGCTCGATTTCAGTTTTCCCCTATTTTTGTGGAGCCTATTCTTTTAAGTCAAACTGATTAGTCATTTAAATGCCCGGTTACAGTTTAAAATGAATGTCGCCCTTTACATGGTTGGTTCAAACTAAAATGCTCGGTGTCATCTAAATGCTCTGCTATTCCTGGTTTTGTTAGATTTACATTTTTGTTCCTGATTTTAAGTTTATGGTCATCTAGGTTTATACTTAGTTCATTATGCTATTTCTATGCTCGTGGTTTTAGGTTTATGGTCATTCAGAAGTTTGATCTCGATTTCAGATGCTCGTCATCTAAATGCTCGGTTTTAG TATATTATTTGTGTAAACAAACATATTACTCCGTAAAATAATGTAGGACCGAATGGAAAGTTGTCCAATATGAGTATCCTAACATTATTGAGATAGTGAGCCCACCTTCAACGAGACATTGCACTGAGACGGCTAGCTTGGCCGCCTCTAGTCCACTTGCAAATTATTCGTACGTGCATTATTGTTTTGCACTAAGCTACACACTTGGACATCTTTCTATATATAGAATTAAAAACACTTGGACATCAACCACAAAACTTCCCCTTTAATTCCCATTCCAAATTAAGTAGCCAACAAAACCATGCAAGCTCCTGCACTAAAAAGCTCTCTCCTTCTCTTCACCCTCTTGCTATTCCTTTCATCCCTCAACCTAGCTTCCTCCGTATGTAACCCAAATGACAAAAAGGCCCTCCTCGATATCAAACACCATTTTAACAATGTGCCCGCCTTCAACACTTGGGATCCCAATACTGATTGTTGCAACAATTGGTCAGGCGTTGTTAGTTGTGATAAACACGGCCATGTTACTACACTCGATTTGTCCTCTTACAACCTTACCGGCTCAATCCCTTCATCACTCGGTCAGTTACGCAAGCTACAAACAGCTAAACCTTCACACTAACAACCTCTCTGGTCATATCCCATCCTTTTTCGGATACATGAATAACTTACAATTTCTTTACCTTTACGACAATAAGCTAACCGGCCCTGTTCCATCTTCCCTCTCTCGACTTCCCAAAATATCAGCGATCAACCTTGGCATAAACCACCTCACAGGGTCCATCCCCAAGTCATTCGGCTATTTCAAAAGCACTCTAATAAGCTCATTAACCCTCTATTTTAACAACTTATCCGGACCGATTCCACGGTCACTAGGAAAGGCGAACATTCAAGTGATAAACCTTAATAACAACCAGTTCACAGGGGATGCCTCGTTTTTGTTTTCGAGGGATAAGACAGCGTTATTCAACATAGACATAAGTAACAATCTCCTTCATTTCGATTTTTCAAACGTTGATCTTCCTCAAAATTTGGCCTACATCGACATAACCCATAACAACATTTATGGTGCTCTTCCTAAACGACTTGGGCAGTTGCCGTTGAAAAGCATTGATGTGAGCTTCAATCACCTTTGTGGGAAGATACCAACTGATTTGTTGTTCTTGGAGGCGTGGCCTTCTTTTTCGTTGTCGACATCTTCTGTTTTTGCTCGGTGGAAACCTACCGGAGATGTGGACCCAATGCATCGGGTCGCGTGCGTTGCGTTAGGAGTCTCCCAGAAATCATATCTCGGGAGCGTGCCTGGGAGATTTCCTACTGTTTTTGGGGAACTTTTTTTTCCCGGGAATCGGTTTGGTTTATGGTCATTCAGAAGTTTGATCTCGATTTCAGATGCTCGTCATCTAAATGCTCGGTTTTAG ATGACAAAAAGGCCCTCCTCGATATCAAACACCATTTTAACAATGTGCCCGCCTTCAACACTTGGGATCCCAATACTGATTGTTGCAACAATTGGTCAGGCGTTGTTAGTTGTGATAAACACGGCCATGTTACTACACTCGATTTGTCCTCTTACAACCTTACCGGCTCAATCCCTTCATCACTCGGTCAGTTACGCAAGCTACAAACAGCTAAACCTTCACACTAACAACCTCTCTGGTCATATCCCATCCTTTTTCGGATACATGAATAACTTACAATTTCTTTACCTTTACGACAATAAGCTAACCGGCCCTGTTCCATCTTCCCTCTCTCGACTTCCCAAAATATCAGCGATCAACCTTGGCATAAACCACCTCACAGGGTCCATCCCCAAGTCATTCGGCTATTTCAAAAGCACTCTAATAAGCTCATTAACCCTCTATTTTAACAACTTATCCGGACCGATTCCACGGTCACTAGGAAAGGCGAACATTCAAGTGATAAACCTTAATAACAACCAGTTCACAGGGGATGCCTCGTTTTTGTTTTCGAGGGATAAGACAGCGTTATTCAACATAGACATAAGTAACAATCTCCTTCATTTCGATTTTTCAAACGTTGATCTTCCTCAAAATTTGGCCTACATCGACATAACCCATAACAACATTTATGGTGCTCTTCCTAAACGACTTGGGCAGTTGCCGTTGAAAAGCATTGATGTGAGCTTCAATCACCTTTGTGGGAAGATACCAACTGATTTGTTGTTCTTGGAGGCGTGGCCTTCTTTTTCGTTGTCGACATCTTCTGTTTTTGCTCGGTGGAAACCTACCGGAGATGTGGACCCAATGCATCGGGTCGCGTGCGTTGCGTTAGGAGTCTCCCAGAAATCATATCTCGGGAGCGTGCCTGGGAGATTTCCTACTGTTTTTGGGGAACTTTTTTTTCCCGGGAATCGGTTTGGTTTATGGTCATTCAGAAGTTTGATCTCGATTTCAGATGCTCGTCATCTAAATGCTCGGTTTTAG MTKRPSSISNTILTMCPPSTLGIPILIVATIGQALLVVINTAMLLHSICPLTTLPAQSLHHSVSYASYKQLNLHTNNLSGHIPSFFGYMNNLQFLYLYDNKLTGPVPSSLSRLPKISAINLGINHLTGSIPKSFGYFKSTLISSLTLYFNNLSGPIPRSLGKANIQVINLNNNQFTGDASFLFSRDKTALFNIDISNNLLHFDFSNVDLPQNLAYIDITHNNIYGALPKRLGQLPLKSIDVSFNHLCGKIPTDLLFLEAWPSFSLSTSSVFARWKPTGDVDPMHRVACVALGVSQKSYLGSVPGRFPTVFGELFFPGNRFGLWSFRSLISISDARHLNARF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12997.1 vs. NCBI nr
Match: gi|902194694|gb|KNA12627.1| (hypothetical protein SOVF_124330 [Spinacia oleracea]) HSP 1 Score: 369.4 bits (947), Expect = 6.800e-99 Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of Spo12997.1 vs. NCBI nr
Match: gi|902180745|gb|KNA09620.1| (hypothetical protein SOVF_152010 [Spinacia oleracea]) HSP 1 Score: 225.7 bits (574), Expect = 1.200e-55 Identity = 111/181 (61.33%), Postives = 141/181 (77.90%), Query Frame = 1
BLAST of Spo12997.1 vs. NCBI nr
Match: gi|902210174|gb|KNA16364.1| (hypothetical protein SOVF_089590 [Spinacia oleracea]) HSP 1 Score: 225.7 bits (574), Expect = 1.200e-55 Identity = 113/184 (61.41%), Postives = 140/184 (76.09%), Query Frame = 1
BLAST of Spo12997.1 vs. NCBI nr
Match: gi|357503055|ref|XP_003621816.1| (polygalacturonase inhibitor [Medicago truncatula]) HSP 1 Score: 210.7 bits (535), Expect = 4.000e-51 Identity = 102/184 (55.43%), Postives = 140/184 (76.09%), Query Frame = 1
BLAST of Spo12997.1 vs. NCBI nr
Match: gi|731323975|ref|XP_010672718.1| (PREDICTED: polygalacturonase inhibitor 1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 206.5 bits (524), Expect = 7.600e-50 Identity = 108/184 (58.70%), Postives = 135/184 (73.37%), Query Frame = 1
BLAST of Spo12997.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QZE9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_124330 PE=4 SV=1) HSP 1 Score: 369.4 bits (947), Expect = 4.700e-99 Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of Spo12997.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QQY8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_152010 PE=4 SV=1) HSP 1 Score: 225.7 bits (574), Expect = 8.500e-56 Identity = 111/181 (61.33%), Postives = 141/181 (77.90%), Query Frame = 1
BLAST of Spo12997.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBH5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_089590 PE=4 SV=1) HSP 1 Score: 225.7 bits (574), Expect = 8.500e-56 Identity = 113/184 (61.41%), Postives = 140/184 (76.09%), Query Frame = 1
BLAST of Spo12997.1 vs. UniProtKB/TrEMBL
Match: G7KVR7_MEDTR (Polygalacturonase inhibitor OS=Medicago truncatula GN=MTR_7g023740 PE=4 SV=1) HSP 1 Score: 210.7 bits (535), Expect = 2.800e-51 Identity = 102/184 (55.43%), Postives = 140/184 (76.09%), Query Frame = 1
BLAST of Spo12997.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CTT7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g060780 PE=4 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 5.300e-50 Identity = 108/184 (58.70%), Postives = 135/184 (73.37%), Query Frame = 1
BLAST of Spo12997.1 vs. ExPASy Swiss-Prot
Match: PGIP1_ARATH (Polygalacturonase inhibitor 1 OS=Arabidopsis thaliana GN=PGIP1 PE=2 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 1.300e-41 Identity = 90/184 (48.91%), Postives = 119/184 (64.67%), Query Frame = 1
BLAST of Spo12997.1 vs. ExPASy Swiss-Prot
Match: PGIP_PYRCO (Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 5.700e-37 Identity = 84/183 (45.90%), Postives = 110/183 (60.11%), Query Frame = 1
BLAST of Spo12997.1 vs. ExPASy Swiss-Prot
Match: PGIP_VITVI (Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 2.200e-36 Identity = 81/183 (44.26%), Postives = 114/183 (62.30%), Query Frame = 1
BLAST of Spo12997.1 vs. ExPASy Swiss-Prot
Match: PGIP2_ARATH (Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2) HSP 1 Score: 144.8 bits (364), Expect = 1.700e-33 Identity = 79/181 (43.65%), Postives = 109/181 (60.22%), Query Frame = 1
BLAST of Spo12997.1 vs. ExPASy Swiss-Prot
Match: PGIP1_ORYSJ (Polygalacturonase inhibitor 1 OS=Oryza sativa subsp. japonica GN=FOR1 PE=2 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 2.300e-30 Identity = 73/184 (39.67%), Postives = 112/184 (60.87%), Query Frame = 1
BLAST of Spo12997.1 vs. TAIR (Arabidopsis)
Match: AT5G06860.1 (polygalacturonase inhibiting protein 1) HSP 1 Score: 171.8 bits (434), Expect = 7.300e-43 Identity = 90/184 (48.91%), Postives = 119/184 (64.67%), Query Frame = 1
BLAST of Spo12997.1 vs. TAIR (Arabidopsis)
Match: AT3G12145.1 (Leucine-rich repeat (LRR) family protein) HSP 1 Score: 153.7 bits (387), Expect = 2.100e-37 Identity = 83/192 (43.23%), Postives = 117/192 (60.94%), Query Frame = 1
BLAST of Spo12997.1 vs. TAIR (Arabidopsis)
Match: AT5G06870.1 (polygalacturonase inhibiting protein 2) HSP 1 Score: 144.8 bits (364), Expect = 9.600e-35 Identity = 79/181 (43.65%), Postives = 109/181 (60.22%), Query Frame = 1
BLAST of Spo12997.1 vs. TAIR (Arabidopsis)
Match: AT3G51740.1 (inflorescence meristem receptor-like kinase 2) HSP 1 Score: 117.1 bits (292), Expect = 2.100e-26 Identity = 79/253 (31.23%), Postives = 135/253 (53.36%), Query Frame = 1
BLAST of Spo12997.1 vs. TAIR (Arabidopsis)
Match: AT5G46330.1 (Leucine-rich receptor-like protein kinase family protein) HSP 1 Score: 115.2 bits (287), Expect = 8.200e-26 Identity = 75/240 (31.25%), Postives = 125/240 (52.08%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12997.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo12997.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo12997.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo12997.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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