Spo12823 (gene)

Overview
NameSpo12823
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionCDGSH iron-sulfur domain-containing protein 2A
Locationchr3 : 1265912 .. 1269018 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACAAATAACTCAATTCCATGATCAACAACAAAGAGTGTGCTCTCCACACGTTCAAAAAACACACTCCATTTATCTTTCCTTATCATTTTTCATTTCTCAAACAAACACAAATTTTCAATTTCCTTTCAAATTAATTTTATTATTTTTTTTAAAAAAATGGCTTCTTCTATTAATATATTAAGCAATATTAATGGATTTTGCAACACAAAACCATCATTTGGTTTACAACAAAGGAAAAGGATGGTTGTGGTAAGGGCAGAAACAATTAATCCAGAAATTAGGAAAACTGAAGAGAAAGTTGTTGATTCTGTTGTTGTTACTGAACTCTCCAAGAATATCACCCCTTATTGCAGGTATCTTTCCTAATTATTTTATTTATTTATTACTTCGTAATTCCGTATATTTTAGGCTCGCTGTAATATAAAGGTCAATTCAGGTTAGTCGACCACAAATCATTTTCGGACAAAAGCTTGTTGTTGTTGTTGTTGTTGTGTTGTTGTTGTATGTGTAATTTTTGCTTGCATTATACTTCCTCCGTTTTTTAATACTCGCAACGTTTGCGTTTTTTACACTATTCACATAATCTACTTTGATTATTGTTTGCGTTTTATTTATAACATAAAACATTGCCATGTGGGATCTTGTTAGATTCATCTTAATGTGTATTTTCAAAATATCAACTTTTTATATTTTTTACATAAAGATAATTTAAGATATAAATGATCAAAGTTGTGCATTGACATGCGTGAAAATAACAAACATTGCAAGTATTAAAAAACGGAAGAAGTATTTTTTTTTTTGAAAAAAAGTTCATGGCTTACTTCATCTTGCATAATATTAAAACTCGTACTCCTTCTGTTTCAAAATGACAAATACGGATAAGAGATAACAATACGTCAATACCCACATACAAGTATGGAGTATTTAAGAACATACTCGAGTTGGATCTTGTTAGTTTCATATTTAATGTAAATTTTTGAATATCAATTTTTTATAATATTTATTTTGTTGTATTAATTTTTAAAATTAACAATAATGTTTACATAATTTTTTTTCCCATAAATGTATATTGGGTTACTTCAGAAAACCCAATATACATACGAGCCAAAAGCAAGGAAATCGAAATGGCATGTTAAAATTAGTAAAATACCCTGCCACTTTTACATGAGCCCAAATGAACTTAAACATTTGAAGCCCATTATGAAATCTGATTATGGACTACTATGAGGCTCTGAGCCCACAAACTCATGTCTAAGAACATTCTATGGCCCAATTTTCACTGAAACTCTGACCTTTTTGTTATATTTTTTTAATTATTGTTTATTTATATCAGGTAAATTCTAACACTTATAAAGCTTCATACTTTGATTATTATTCACCCAATAGTGCATTTACGTGCATGCCCTTCATTTCCTTCTTTGTTTTATTTTGTCTTATTCTTAACAATAGACCATTTACGGTTTCACCCTTCCATTGCTATACAAAATGTATTGTTTTCTTTGGGTATAATTTCCTTTATATTGTACCTTCAAACTATCAATTAAAACGCATATGGTTTCTATTTCCTGTTACATGTAAATCCAACATCTAACTTTAACATATCATTTCTAGCATTTACCATAAATTGTAAGTTCCTAACTTTTAAGTAACATTTTTACAAAAATAATTGTATATACCTTGGGGTATCGTGCCGCTAGCGCACGATCCAACAACTAGTGTGCATAAATGAATCAACATTCACCAAATACAATCTAAACATACTATGCAACTATGGTCCTTTAGGACCTTTGCAAAATTTACAAAATAACAAAAATACAAAATGATAGTAAGCTCTTCCTGTGACAACTACTTGTATGTTGAGATAGCTTGGTTTGCCCCACTAACGAAGTGTTATCTTGCAAACTAGGGCTGGCAATCCCTAACCCACCCTGATAATCCGACTTGAATCTCGTCCTTAAGTTAAAAGAGAGAAACTCGAACCCGGCCTGGAACGAACCCGAATGACCTGAAATCGACCCGATTTGACCCATTTATCATATATTGTAGTAATATTAATTAAGTTTTACAATATTTCTGATACTTCCTATGTTCATAAATACTCGCAACGTTCGGTATTTTTACACTATTCACATATTCCACTTTGATTATTGTTGGTGATTTATATGTCAAATAAAACATAGTCATGTGTGATCTTGTTAGATTCGTCTCAATATATATTTTTAAAATATCAACTTTTTATAATTTTTGCTTGAAGAGAATTTAAGATATTGACAATCTAAATTATGCATTGGCATGCATGAAAATGACAAACGTTGCGAGTATTTATGAACGGAGGAAGTATTATTTTACACCAACTCGAAATTGACCCAAAACCAAACCCGAACCTGACCCACTGACTCGAATTTCCACCCCTAATATTGCAAACCCACAATTGGCCATGATTTCCTTATAAAAGATAGAGTAGAAAGTTAGGTGGTAAATCCATTAATTAGACTCCTTTAATTTGGTTGATATAAAAAATGTTATTTTTGCTAATTGTAGGTGTTGGAGATCAGGAACTTTTCCTTTATGTGATGGGAGTCATATGAAACACAACAAAGCTACTGGTGACAACGTTGGACCTTTGTTGTTGAAGAAGCAGTAATAATTCTTTAGGTTAACTTTTGTTGCTTTTCTCTTTTCTCTTTGTTATGGATAATGGATTCTATTGTCATTGTATTTCTTTAAATAATGCCTCCTATAATTAATTTGAGTATAAAACTGTGTACTTCACATTTTAAATTCCGTATTACTTAATTTTTCTACTGATCCTTGCCTAAATTGTTCTTGATCGATTTATCAGTTCATTTATTTATGTTACTCCCTCCGTCCCACATTAGTTGTTACACTTTCTTTTTTCGTGCGTCTCAGATTAGTTTTTACACTTCTAAATTAGGAATGACCCCACAATTATTATATTGTCTCTCTCTTCCCACTAAATCTTTTTTTGTCCCCACACCCTTTCTCATTCAATTAGAAAAATACCCCACTAACTCCTATCACATCTACTTTTTCAATAAAATAATAATTGATAACCAAACTACTACTTATCGCATTAAACTGTGT

mRNA sequence

CCACAAATAACTCAATTCCATGATCAACAACAAAGAGTGTGCTCTCCACACGTTCAAAAAACACACTCCATTTATCTTTCCTTATCATTTTTCATTTCTCAAACAAACACAAATTTTCAATTTCCTTTCAAATTAATTTTATTATTTTTTTTAAAAAAATGGCTTCTTCTATTAATATATTAAGCAATATTAATGGATTTTGCAACACAAAACCATCATTTGGTTTACAACAAAGGAAAAGGATGGTTGTGGTAAGGGCAGAAACAATTAATCCAGAAATTAGGAAAACTGAAGAGAAAGTTGTTGATTCTGTTGTTGTTACTGAACTCTCCAAGAATATCACCCCTTATTGCAGGTGTTGGAGATCAGGAACTTTTCCTTTATGTGATGGGAGTCATATGAAACACAACAAAGCTACTGGTGACAACGTTGGACCTTTGTTGTTGAAGAAGCAGTAATAATTCTTTAGGTTAACTTTTGTTGCTTTTCTCTTTTCTCTTTGTTATGGATAATGGATTCTATTGTCATTGTATTTCTTTAAATAATGCCTCCTATAATTAATTTGAGTATAAAACTGTGTACTTCACATTTTAAATTCCGTATTACTTAATTTTTCTACTGATCCTTGCCTAAATTGTTCTTGATCGATTTATCAGTTCATTTATTTATGTTACTCCCTCCGTCCCACATTAGTTGTTACACTTTCTTTTTTCGTGCGTCTCAGATTAGTTTTTACACTTCTAAATTAGGAATGACCCCACAATTATTATATTGTCTCTCTCTTCCCACTAAATCTTTTTTTGTCCCCACACCCTTTCTCATTCAATTAGAAAAATACCCCACTAACTCCTATCACATCTACTTTTTCAATAAAATAATAATTGATAACCAAACTACTACTTATCGCATTAAACTGTGT

Coding sequence (CDS)

ATGGCTTCTTCTATTAATATATTAAGCAATATTAATGGATTTTGCAACACAAAACCATCATTTGGTTTACAACAAAGGAAAAGGATGGTTGTGGTAAGGGCAGAAACAATTAATCCAGAAATTAGGAAAACTGAAGAGAAAGTTGTTGATTCTGTTGTTGTTACTGAACTCTCCAAGAATATCACCCCTTATTGCAGGTGTTGGAGATCAGGAACTTTTCCTTTATGTGATGGGAGTCATATGAAACACAACAAAGCTACTGGTGACAACGTTGGACCTTTGTTGTTGAAGAAGCAGTAA

Protein sequence

MASSINILSNINGFCNTKPSFGLQQRKRMVVVRAETINPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLLKKQ
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12823.1Spo12823.1mRNA


Homology
[Close]
BLAST of Spo12823.1 vs. NCBI nr
Match: gi|731363863|ref|XP_010693662.1| (PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 181.4 bits (459), Expect = 7.600e-43
Identity = 90/106 (84.91%), Postives = 93/106 (87.74%), Query Frame = 1 

		  

Query: 1   MASSINILSNINGFCNTKPSFGL-------QQRKRMVVVRAETINPEIRKTEEKVVDSVV 60
           MAS +  LS INGFC TKPSFG        QQ+KRMVVV+AETINPEIRKTEEKVVDSVV
Sbjct: 1   MASVVTTLSYINGFCCTKPSFGFVSYPSSSQQKKRMVVVKAETINPEIRKTEEKVVDSVV 60

Query: 61  VTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLLKKQ 100
           VTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLLKKQ
Sbjct: 61  VTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLLKKQ 106
[Close]
BLAST of Spo12823.1 vs. NCBI nr
Match: gi|902217475|gb|KNA17737.1| (hypothetical protein SOVF_077520 [Spinacia oleracea])

HSP 1 Score: 150.2 bits (378), Expect = 1.900e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 29  MVVVRAETINPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATG 88
           MVVVRAETINPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATG
Sbjct: 1   MVVVRAETINPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATG 60

Query: 89  DNVGPLLLKKQ 100
           DNVGPLLLKKQ
Sbjct: 61  DNVGPLLLKKQ 71
[Close]
BLAST of Spo12823.1 vs. NCBI nr
Match: gi|297792477|ref|XP_002864123.1| (hypothetical protein ARALYDRAFT_495239 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 141.4 bits (355), Expect = 8.700e-31
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 1 

		  

Query: 24  QQRKRMVVVRAET----INPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS 83
           Q+++RMVVVRAE     INPEIRK EEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS
Sbjct: 30  QKQQRMVVVRAEGGGGGINPEIRKNEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS 89

Query: 84  HMKHNKATGDNVGPLLLKKQ 100
           H+KHNKA GDNVGPLLLKKQ
Sbjct: 90  HVKHNKANGDNVGPLLLKKQ 109
[Close]
BLAST of Spo12823.1 vs. NCBI nr
Match: gi|729330553|ref|XP_010536517.1| (PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Tarenaya hassleriana])

HSP 1 Score: 141.0 bits (354), Expect = 1.100e-30
Identity = 69/77 (89.61%), Postives = 71/77 (92.21%), Query Frame = 1 

		  

Query: 25  QRKRMVVVRAET--INPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMK 84
           +R+  VVVRAE   INPEIRK EEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMK
Sbjct: 30  RRRMSVVVRAEGGGINPEIRKNEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMK 89

Query: 85  HNKATGDNVGPLLLKKQ 100
           HNKATGDNVGPLLLKKQ
Sbjct: 90  HNKATGDNVGPLLLKKQ 106
[Close]
BLAST of Spo12823.1 vs. NCBI nr
Match: gi|747059806|ref|XP_011076302.1| (PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Sesamum indicum])

HSP 1 Score: 140.2 bits (352), Expect = 1.900e-30
Identity = 68/91 (74.73%), Postives = 75/91 (82.42%), Query Frame = 1 

		  

Query: 15  CNTKPSFGLQQRK------RMVVVRAETINPEIRKTEEKVVDSVVVTELSKNITPYCRCW 74
           C    + GL  R+      RMVVVRAE INP+IRKTEEKVVDSVVVT+L+K +TPYCRCW
Sbjct: 41  CVNASALGLAYRRPGSSPRRMVVVRAEAINPDIRKTEEKVVDSVVVTDLAKPLTPYCRCW 100

Query: 75  RSGTFPLCDGSHMKHNKATGDNVGPLLLKKQ 100
           RS TFPLCDGSH+KHNKATGDNVGPLLLKKQ
Sbjct: 101 RSATFPLCDGSHVKHNKATGDNVGPLLLKKQ 131
[Close]
BLAST of Spo12823.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BC48_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g067500 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 5.300e-43
Identity = 90/106 (84.91%), Postives = 93/106 (87.74%), Query Frame = 1 

		  

Query: 1   MASSINILSNINGFCNTKPSFGL-------QQRKRMVVVRAETINPEIRKTEEKVVDSVV 60
           MAS +  LS INGFC TKPSFG        QQ+KRMVVV+AETINPEIRKTEEKVVDSVV
Sbjct: 1   MASVVTTLSYINGFCCTKPSFGFVSYPSSSQQKKRMVVVKAETINPEIRKTEEKVVDSVV 60

Query: 61  VTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLLKKQ 100
           VTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLLKKQ
Sbjct: 61  VTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLLKKQ 106
[Close]
BLAST of Spo12823.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFY0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_077520 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.300e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 29  MVVVRAETINPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATG 88
           MVVVRAETINPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATG
Sbjct: 1   MVVVRAETINPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATG 60

Query: 89  DNVGPLLLKKQ 100
           DNVGPLLLKKQ
Sbjct: 61  DNVGPLLLKKQ 71
[Close]
BLAST of Spo12823.1 vs. UniProtKB/TrEMBL
Match: D7MR33_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_495239 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 6.100e-31
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 1 

		  

Query: 24  QQRKRMVVVRAET----INPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS 83
           Q+++RMVVVRAE     INPEIRK EEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS
Sbjct: 30  QKQQRMVVVRAEGGGGGINPEIRKNEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS 89

Query: 84  HMKHNKATGDNVGPLLLKKQ 100
           H+KHNKA GDNVGPLLLKKQ
Sbjct: 90  HVKHNKANGDNVGPLLLKKQ 109
[Close]
BLAST of Spo12823.1 vs. UniProtKB/TrEMBL
Match: A0A078EI93_BRANA (BnaA10g07790D protein OS=Brassica napus GN=BnaA10g07790D PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.800e-30
Identity = 68/80 (85.00%), Postives = 72/80 (90.00%), Query Frame = 1 

		  

Query: 24  QQRKRMVVVRAET----INPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS 83
           ++++RM VVRAE     INPEIRK EEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS
Sbjct: 29  RKQQRMAVVRAEGGGGGINPEIRKNEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS 88

Query: 84  HMKHNKATGDNVGPLLLKKQ 100
           HMKHNKA GDNVGPLLLKKQ
Sbjct: 89  HMKHNKANGDNVGPLLLKKQ 108
[Close]
BLAST of Spo12823.1 vs. UniProtKB/TrEMBL
Match: W9S1F7_9ROSA (CDGSH iron-sulfur domain-containing protein 2A OS=Morus notabilis GN=L484_012960 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.300e-30
Identity = 69/86 (80.23%), Postives = 76/86 (88.37%), Query Frame = 1 

		  

Query: 18  KPSFGLQQR--KRMVVVRAE--TINPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTF 77
           KP+   + R  +R+VVVRAE   INPEIRK+EEKVVDSVVVTELSK +TPYCRCWRSGTF
Sbjct: 32  KPTTNFKSRSSRRLVVVRAEGQAINPEIRKSEEKVVDSVVVTELSKPLTPYCRCWRSGTF 91

Query: 78  PLCDGSHMKHNKATGDNVGPLLLKKQ 100
           PLCDGSH+KHNKATGDNVGPLLLKKQ
Sbjct: 92  PLCDGSHVKHNKATGDNVGPLLLKKQ 117
[Close]
BLAST of Spo12823.1 vs. ExPASy Swiss-Prot
Match: NEET_ARATH (CDGSH iron-sulfur domain-containing protein NEET OS=Arabidopsis thaliana GN=NEET PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.700e-32
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 1 

		  

Query: 24  QQRKRMVVVRAET---INPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSH 83
           ++++RMVVVRAE    INPEIRK E+KVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSH
Sbjct: 30  RKQQRMVVVRAEGGGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSH 89

Query: 84  MKHNKATGDNVGPLLLKKQ 100
           +KHNKA GDNVGPLLLKKQ
Sbjct: 90  VKHNKANGDNVGPLLLKKQ 108
[Close]
BLAST of Spo12823.1 vs. ExPASy Swiss-Prot
Match: CID2A_ONCMY (CDGSH iron-sulfur domain-containing protein 2A OS=Oncorhynchus mykiss GN=cisd2a PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.100e-16
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1 

		  

Query: 37  INPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLL 96
           IN EI+K   KVV+ + + +L++    YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+L
Sbjct: 71  INLEIQKENPKVVNEIDIEDLNRTNVCYCRCWRSKTFPVCDKSHIKHNELTGDNVGPLIL 130

Query: 97  KKQ 100
           KK+
Sbjct: 131 KKK 133
[Close]
BLAST of Spo12823.1 vs. ExPASy Swiss-Prot
Match: CISD2_MOUSE (CDGSH iron-sulfur domain-containing protein 2 OS=Mus musculus GN=Cisd2 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.700e-16
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 1 

		  

Query: 13  GFCNTKPSFGLQQRKRMVVVRAETINPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGT 72
           G+   +P F  +++++        IN +I+K   KVV+ + + +L      YCRCWRS T
Sbjct: 52  GYLAVRPFFPKKKQQK-----DSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKT 111

Query: 73  FPLCDGSHMKHNKATGDNVGPLLLKKQ 100
           FP CDGSH KHN+ TGDNVGPL+LKK+
Sbjct: 112 FPACDGSHNKHNELTGDNVGPLILKKK 133
[Close]
BLAST of Spo12823.1 vs. ExPASy Swiss-Prot
Match: CID2A_XENLA (CDGSH iron-sulfur domain-containing protein 2A OS=Xenopus laevis GN=cisd2-a PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.900e-16
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1 

		  

Query: 37  INPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLL 96
           IN +I+K   KVV+ + + +L      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+L
Sbjct: 71  INLKIQKENPKVVNEINIEDLHLAKAAYCRCWRSKTFPVCDGSHNKHNELTGDNVGPLIL 130

Query: 97  KKQ 100
           KK+
Sbjct: 131 KKK 133
[Close]
BLAST of Spo12823.1 vs. ExPASy Swiss-Prot
Match: CISD2_XENTR (CDGSH iron-sulfur domain-containing protein 2 OS=Xenopus tropicalis GN=cisd2 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.900e-16
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1 

		  

Query: 37  INPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLL 96
           IN +I+K   KVV+ + + +L      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+L
Sbjct: 71  INLKIQKENPKVVNEINIEDLHLAKAAYCRCWRSKTFPVCDGSHNKHNELTGDNVGPLIL 130

Query: 97  KKQ 100
           KK+
Sbjct: 131 KKK 133
[Close]
BLAST of Spo12823.1 vs. TAIR (Arabidopsis)
Match: AT5G51720.1 (2 iron, 2 sulfur cluster binding)

HSP 1 Score: 139.0 bits (349), Expect = 1.500e-33
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 1 

		  

Query: 24  QQRKRMVVVRAET---INPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSH 83
           ++++RMVVVRAE    INPEIRK E+KVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSH
Sbjct: 30  RKQQRMVVVRAEGGGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSH 89

Query: 84  MKHNKATGDNVGPLLLKKQ 100
           +KHNKA GDNVGPLLLKKQ
Sbjct: 90  VKHNKANGDNVGPLLLKKQ 108
The following BLAST results are available for this feature:
BLAST of Spo12823.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|731363863|ref|XP_010693662.1|7.6e-4384.9PREDICTED: CDGSH iron-sulfur d... [more]
gi|902217475|gb|KNA17737.1|1.9e-33100.hypothetical protein SOVF_0775... [more]
gi|297792477|ref|XP_002864123.1|8.7e-3186.2hypothetical protein ARALYDRAF... [more]
gi|729330553|ref|XP_010536517.1|1.1e-3089.6PREDICTED: CDGSH iron-sulfur d... [more]
gi|747059806|ref|XP_011076302.1|1.9e-3074.7PREDICTED: CDGSH iron-sulfur d... [more]
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BLAST of Spo12823.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8BC48_BETVU5.3e-4384.9Uncharacterized protein OS=Bet... [more]
A0A0K9RFY0_SPIOL1.3e-33100.Uncharacterized protein OS=Spi... [more]
D7MR33_ARALL6.1e-3186.2Putative uncharacterized prote... [more]
A0A078EI93_BRANA1.8e-3085.0BnaA10g07790D protein OS=Brass... [more]
W9S1F7_9ROSA2.3e-3080.2CDGSH iron-sulfur domain-conta... [more]
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BLAST of Spo12823.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NEET_ARATH2.7e-3284.8CDGSH iron-sulfur domain-conta... [more]
CID2A_ONCMY2.1e-1658.7CDGSH iron-sulfur domain-conta... [more]
CISD2_MOUSE4.7e-1645.9CDGSH iron-sulfur domain-conta... [more]
CID2A_XENLA7.9e-1658.7CDGSH iron-sulfur domain-conta... [more]
CISD2_XENTR7.9e-1658.7CDGSH iron-sulfur domain-conta... [more]
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BLAST of Spo12823.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G51720.11.5e-3384.82 iron, 2 sulfur cluster bindi... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018967Iron sulphur-containing domain, CDGSH-typePFAMPF09360zf-CDGSHcoord: 54..80
score: 4.
IPR018967Iron sulphur-containing domain, CDGSH-typeSMARTSM00704znf_cdgshcoord: 47..86
score: 4.
NoneNo IPR availablePANTHERPTHR13680FAMILY NOT NAMEDcoord: 25..99
score: 1.1

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055072 iron ion homeostasis
biological_process GO:0000902 cell morphogenesis
biological_process GO:0016310 phosphorylation
biological_process GO:0031537 regulation of anthocyanin metabolic process
biological_process GO:0080036 regulation of cytokinin-activated signaling pathway
biological_process GO:0010029 regulation of seed germination
biological_process GO:0048831 regulation of shoot system development
biological_process GO:0006950 response to stress
biological_process GO:0000041 transition metal ion transport
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0015698 inorganic anion transport
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0006879 cellular iron ion homeostasis
biological_process GO:0015994 chlorophyll metabolic process
biological_process GO:0006826 iron ion transport
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0010020 chloroplast fission
biological_process GO:0017009 protein-phycocyanobilin linkage
biological_process GO:0051302 regulation of cell division
biological_process GO:0000160 phosphorelay signal transduction system
biological_process GO:0009553 embryo sac development
biological_process GO:0010286 heat acclimation
biological_process GO:0006591 ornithine metabolic process
biological_process GO:0010051 xylem and phloem pattern formation
biological_process GO:0015979 photosynthesis
biological_process GO:0006631 fatty acid metabolic process
biological_process GO:0015671 oxygen transport
biological_process GO:0009735 response to cytokinin
biological_process GO:0019432 triglyceride biosynthetic process
biological_process GO:0006526 arginine biosynthetic process
biological_process GO:0048481 plant ovule development
biological_process GO:0016049 cell growth
biological_process GO:0006560 proline metabolic process
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0009269 response to desiccation
biological_process GO:0010150 leaf senescence
biological_process GO:0035999 tetrahydrofolate interconversion
biological_process GO:0006468 protein phosphorylation
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0051301 cell division
biological_process GO:0000302 response to reactive oxygen species
biological_process GO:0015031 protein transport
biological_process GO:0010050 vegetative phase change
biological_process GO:0046777 protein autophosphorylation
biological_process GO:0010207 photosystem II assembly
biological_process GO:0010206 photosystem II repair
biological_process GO:0009657 plastid organization
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0006771 riboflavin metabolic process
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0008152 metabolic process
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0019497 hexachlorocyclohexane metabolic process
biological_process GO:0007165 signal transduction
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0015770 sucrose transport
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006694 steroid biosynthetic process
biological_process GO:0016114 terpenoid biosynthetic process
biological_process GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0030154 cell differentiation
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0010155 regulation of proton transport
biological_process GO:0009637 response to blue light
biological_process GO:0010218 response to far red light
biological_process GO:0009644 response to high light intensity
biological_process GO:0010114 response to red light
biological_process GO:0006364 rRNA processing
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0006555 methionine metabolic process
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0009744 response to sucrose
biological_process GO:0019853 L-ascorbic acid biosynthetic process
biological_process GO:0009231 riboflavin biosynthetic process
biological_process GO:0006013 mannose metabolic process
biological_process GO:0009646 response to absence of light
biological_process GO:0046686 response to cadmium ion
biological_process GO:0046680 response to DDT
biological_process GO:0033591 response to L-ascorbic acid
biological_process GO:0006833 water transport
biological_process GO:0009750 response to fructose
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0070838 divalent metal ion transport
biological_process GO:0042742 defense response to bacterium
biological_process GO:0010043 response to zinc ion
biological_process GO:0006000 fructose metabolic process
biological_process GO:0030003 cellular cation homeostasis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006629 lipid metabolic process
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0006816 calcium ion transport
biological_process GO:0006865 amino acid transport
biological_process GO:0006007 glucose catabolic process
biological_process GO:0007030 Golgi organization
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0009651 response to salt stress
biological_process GO:0007033 vacuole organization
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009298 GDP-mannose biosynthetic process
biological_process GO:0042908 xenobiotic transport
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0048519 negative regulation of biological process
biological_process GO:0016556 mRNA modification
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0072593 reactive oxygen species metabolic process
biological_process GO:0006886 intracellular protein transport
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0048439 flower morphogenesis
biological_process GO:0048438 floral whorl development
biological_process GO:0010582 floral meristem determinacy
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0055085 transmembrane transport
biological_process GO:0030244 cellulose biosynthetic process
biological_process GO:0009887 animal organ morphogenesis
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0009850 auxin metabolic process
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0010158 abaxial cell fate specification
biological_process GO:0009734 auxin-activated signaling pathway
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0009512 cytochrome b6f complex
cellular_component GO:0045277 respiratory chain complex IV
cellular_component GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0032580 Golgi cisterna membrane
cellular_component GO:0005746 mitochondrial respiratory chain
cellular_component GO:0045254 pyruvate dehydrogenase complex
cellular_component GO:0005801 cis-Golgi network
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005887 integral component of plasma membrane
cellular_component GO:0005773 vacuole
cellular_component GO:0005739 mitochondrion
cellular_component GO:0033179 proton-transporting V-type ATPase, V0 domain
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016471 vacuolar proton-transporting V-type ATPase complex
cellular_component GO:0009707 chloroplast outer membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0009348 ornithine carbamoyltransferase complex
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005622 intracellular
cellular_component GO:0009349 riboflavin synthase complex
cellular_component GO:0010319 stromule
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005829 cytosol
cellular_component GO:0010287 plastoglobule
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0005795 Golgi stack
cellular_component GO:0000325 plant-type vacuole
cellular_component GO:0016020 membrane
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005886 plasma membrane
molecular_function GO:0004310 farnesyl-diphosphate farnesyltransferase activity
molecular_function GO:0042803 protein homodimerization activity
molecular_function GO:0004585 ornithine carbamoyltransferase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0005344 oxygen carrier activity
molecular_function GO:0005515 protein binding
molecular_function GO:0019825 oxygen binding
molecular_function GO:0004740 pyruvate dehydrogenase (acetyl-transferring) kinase activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0020037 heme binding
molecular_function GO:0008515 sucrose transmembrane transporter activity
molecular_function GO:0015293 symporter activity
molecular_function GO:0051996 squalene synthase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003993 acid phosphatase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005484 SNAP receptor activity
molecular_function GO:0004322 ferroxidase activity
molecular_function GO:0008199 ferric iron binding
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0016740 transferase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0010181 FMN binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
molecular_function GO:0004476 mannose-6-phosphate isomerase activity
molecular_function GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity
molecular_function GO:0043424 protein histidine kinase binding
molecular_function GO:0009927 histidine phosphotransfer kinase activity
molecular_function GO:0016597 amino acid binding
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
molecular_function GO:0051087 chaperone binding
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
molecular_function GO:0004746 riboflavin synthase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0005198 structural molecule activity
molecular_function GO:0016829 lyase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo212150.82Barchart | Table
Spo045370.81Barchart | Table
Spo102840.79Barchart | Table
Spo060310.79Barchart | Table
Spo035720.78Barchart | Table
Spo225830.78Barchart | Table
Spo178600.77Barchart | Table
Spo014480.77Barchart | Table
Spo185780.77Barchart | Table
Spo089350.76Barchart | Table
Spo008950.76Barchart | Table
Spo160790.76Barchart | Table
Spo025730.76Barchart | Table
Spo028900.75Barchart | Table
Spo180800.75Barchart | Table
Spo246300.75Barchart | Table
Spo181950.75Barchart | Table
Spo266970.75Barchart | Table
Spo095540.74Barchart | Table
Spo016860.74Barchart | Table
Spo024640.74Barchart | Table
Spo244250.74Barchart | Table
Spo204410.74Barchart | Table
Spo052350.73Barchart | Table
Spo248340.73Barchart | Table
Spo240460.73Barchart | Table
Spo211440.73Barchart | Table
Spo166410.73Barchart | Table
Spo161880.73Barchart | Table
Spo247320.73Barchart | Table
Spo019250.73Barchart | Table
Spo142250.73Barchart | Table
Spo083390.73Barchart | Table
Spo118540.73Barchart | Table
Spo062930.73Barchart | Table
Spo273640.73Barchart | Table
Spo264300.72Barchart | Table
Spo091070.72Barchart | Table
Spo093810.72Barchart | Table
Spo175770.72Barchart | Table
Spo206510.72Barchart | Table
Spo086200.71Barchart | Table
Spo266100.71Barchart | Table
Spo027460.71Barchart | Table
Spo270810.71Barchart | Table
Spo237120.71Barchart | Table
Spo086450.71Barchart | Table
Spo086540.71Barchart | Table
Spo208370.71Barchart | Table
Spo103730.71Barchart | Table
Spo123540.70Barchart | Table
Spo109400.70Barchart | Table
Spo243250.70Barchart | Table
Spo053780.70Barchart | Table
Spo081970.70Barchart | Table
Spo036380.70Barchart | Table
Spo162400.70Barchart | Table
Spo076190.70Barchart | Table
Spo246750.69Barchart | Table
Spo053070.69Barchart | Table
Spo145370.69Barchart | Table
Spo210210.69Barchart | Table
Spo198140.69Barchart | Table
Spo194310.69Barchart | Table
Spo071490.69Barchart | Table
Spo146300.69Barchart | Table
Spo059150.69Barchart | Table
Spo119600.69Barchart | Table
Spo192590.69Barchart | Table
Spo069530.68Barchart | Table
Spo006770.68Barchart | Table
Spo011350.68Barchart | Table
Spo028130.68Barchart | Table
Spo029180.68Barchart | Table
Spo113170.68Barchart | Table
Spo134900.68Barchart | Table
Spo140870.68Barchart | Table
Spo166950.68Barchart | Table
Spo184710.68Barchart | Table
Spo216600.68Barchart | Table
Spo220520.68Barchart | Table
Spo226830.68Barchart | Table
Spo228110.68Barchart | Table
Spo234620.68Barchart | Table
Spo246130.68Barchart | Table
Spo126880.67Barchart | Table
Spo126590.67Barchart | Table
Spo102350.67Barchart | Table
Spo001990.67Barchart | Table
Spo017140.67Barchart | Table
Spo001650.67Barchart | Table
Spo079410.67Barchart | Table
Spo012610.67Barchart | Table
Spo007250.67Barchart | Table
Spo232570.67Barchart | Table
Spo167970.67Barchart | Table
Spo077730.67Barchart | Table
Spo250080.67Barchart | Table
Spo170440.67Barchart | Table
Spo137740.67Barchart | Table
Spo054020.67Barchart | Table
Spo152110.67Barchart | Table
Spo085910.67Barchart | Table
Spo026960.67Barchart | Table
Spo173640.66Barchart | Table
Spo179860.66Barchart | Table
Spo096710.66Barchart | Table
Spo198290.66Barchart | Table
Spo094530.66Barchart | Table
Spo093350.66Barchart | Table
Spo087130.66Barchart | Table
Spo211550.66Barchart | Table
Spo081140.66Barchart | Table
Spo215930.66Barchart | Table
Spo024800.66Barchart | Table
Spo271980.66Barchart | Table
Spo236260.66Barchart | Table
Spo057280.66Barchart | Table
Spo029790.66Barchart | Table
Spo154610.66Barchart | Table
Spo154470.66Barchart | Table
Spo168860.66Barchart | Table
Spo056530.65Barchart | Table
Spo087260.65Barchart | Table
Spo176100.65Barchart | Table
Spo251070.65Barchart | Table
Spo148810.65Barchart | Table
Spo169510.65Barchart | Table
Spo128430.65Barchart | Table
Spo235180.65Barchart | Table
Spo076030.65Barchart | Table
Spo222760.65Barchart | Table
Spo146380.65Barchart | Table
Spo219250.65Barchart | Table