Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACTATTTTATGTCAATCTTTATTTTGGTATTAAAAATTTAAAAATTATACAAGTACAATTGGAAAGAAAAGCTCATAAACCCTAAAACCAGCTTAAAAACCCCCACACCTCTCTGTTCTTCCCCTTTCTTCTTCCTCTCTCCTGTAATGGTAGCCATGGCAGAAGAGCTCCAATCCTCAGACCATCAACAGAAAAATGTCGCAAAATTACTATGCGAAGAGTGTAATTTAAAGGAATTCAAATACAAATGCCCAGCTTGCTTCCGCCGCACTTGCAGCCTTCCTTGCGTTAAGTCCCACAAGCAACTCTCTGGTTGTACTGGCAAAAAAACAATATCCGACATCATCCCCCTTTCTGAATTTGACGATTCTACACTTCTTTCTGGTAAATTTCTTCCCCTTTTATTCTTCCCCAATTTTCAGTGTTCTTCAACAAATTTTTTAATTGTTTGTTCATGTAATTAAAATTGGTACTTTGTAGTTTAACGATGGATTGTTGTTTTGGGTTTGATTGAATTTTGATTGAGAATGCAATTAGGCAGCTGAGTATCTTGCTGATTATAATTTGGGTTCTCAATTCAAGCTGATTTTGCTAATTAATTTTGGTTTTCAATGTTTTCATGATATTTAGCAAGCATTTCTCAATTTTGATAATTAAAATTGGTATTTTGTAGTTTTATGATGGGATATTGTTTTGGGTTTGATTGAGGATGCAATTAGGCAGCTGAGTATCTTGCTGATTATAATTTGGATTTTCAATTCTAGCTGATTTTGCTAATTAAATTTGGTTTTCATGAAATTTAGCAAGATTTTCTTAATTTTGATATTAAAATTGTTATCGTTTAATCTTATGATGGATTGTTGTTTTGGGTTTGACTGAATTTTGATTTGAGGATGCAATTAGACGGACAGCTGAGTATCTTGCTGATATAATTTGGGTTTTCGATTCTAGCTGATTTTGCTAATTAAATTTGGGTTTCATGACATTAGCAAGATTTTCTTAATTTTGATGATTAAAATTGGTATTGTTTTGTCTTATGATGGATTGTTGTTTTGGGTTTGATTGAATTTTGATTTGAGGATGCAATTAGATAGATAACTGATTATCTTGCTGATATAATTTGGGTTTTCAATTCTAGCTGATTTTGCTAATTAAATTTTGATTTTCTTGACATTTAGCAAGATTTTCTTAACTTTGGTTGCTTCCAGTTTTGGTTGTCCCCTGTATTTTGGTTTCGGTTTTATTTTCTCATTGAATTTGACATTTGATATATTGTGCAATGGATGCCATTTTGGTTGGTTCAGATTATAATTTGTTGGAAGATGTGAAAAGGGTAGCTGATTCTGCCCAGCGAACGCGTGTGAAACTATGTGGTTATCATCCTCAATTTAGGCTCCCTTTCCATCTTAAAGCACTTCGGAGTGCTGCGGGGAGGAAAGGAACTAAGCTTTTGTTACTTCCTTCTGGGATGGCTAAAAGGGAGAATAATCAAACTAGATTCAATCAAAGGTAAATCATCCATACTGTGAAACACTGCCTGAAGAATTTTGGTACTCAATTTTGGAGATATTGTTAGTCTATTGATTTGAAATAGATTGTAGTTCGAGTTGTTGGACGAGTGAGGCTAAATGACTCAGTTTCCCTCCTTTGACCTCGTTTCTACCTGTATTTTGTCAGGGGGGGGGAGGAGGGTAGAGACTTGGAGTATGTAGATTTCGAGTGATTTTAGAAATGGGTTAATTTCGAGCATGATATGAACATGGAAGGTAACTTTTGGTCGAATTTGTTCAAAGCTCGGGATTTGAAAGGCACTAGCAGAGGCGTCTTGGATAATAGGGAGTGAAGGCAGTCAGATAGAACTGCAAGTAAACTTTTGCAAGAATTGGAGTATGTAGATTTCGAGTGATTTTATAAATGGGTTAATTTCGAGCATGAAGGAAGTCAGATAGAACAGCAAGTAAACTTTTGCTACGATTTTAGGAGAAATCTTATCAGGAAAAGTAGTATTTTAAGTCCCTTCATCTGAAAATGATTGTTACTTTTATTGCCAACGTTTTCTAGATGATGAGGATCATGGGGTAGAGACTTGGAGTATGTAGATTTCGAGTGATTTTAGAAATGGTTTAATCTCGAGCATGATTGAAGGCAGTCAGATAAACTGAAAGTAAACTTTTGCTACGATTTTAGAAGAAATCTTACCTTAAAAATTCTATATCAGGAAAAGTAATCTTTTAAGTCCCTTCATCCTAACGAGATTGGTACTTTATTGCTAATGTTTTCGAGATGATGATGACCATGATTGTACTAGCACTTCCCTAAGTAGAGTTATACAGTCAAGATTTATATATAGTTTTAGGAGAAATCTTATCTTAAAAGTTCATATCAGGAAAAGTAATCTTTTAAGTCCCTTCATCTGAAATAGATTGTTACTTTTACTGCTAATGTTTCGAGATGATGAGGACCATGAGCGTACTAACACTTCCCTAAGTAGAGTTATACAGTCAATGTAAAACTTTGCCGAGTTGGTTAGTCTTTTCCAAGTAAACAGAATTTTTTAATTTTTGAAATGTGAAGTATGAGGAGCATGGACATGTAATTTATTGTTCAACTTCTCATTTTTCTCCAGGAAGAAATTTATCTCGTGGACGATTGAATGGCGATTTAATTCAACTGATGTTGTTTTGCTTGAACACGGGTCAGTAATTTGTTACAGTATTGTATCTGCATCAAAACTTCTTTGCTTTAGCCTTTAACCTTGTTTTGGTTAAACCTTGAGATTATCTTTGGTCATGTCATAGGGTGCACGAAAGCACAACTTTGCGGTCAGTAATTGAGAAGCATCTGCAACCTAGTCCGTGGAGAAATAAGTTGAGGAGATTCTGTGAAGAACCTCTTGAAAATCTCAAGTTTTTTATTCGTAAATATCACAAGGTTCGCAACTTTGACCTCTTTGTTGCTTTCTTGTCAGAATCCTTGTTTAGGACAGGTTCTGTTAATTCCTTCTTTGTTGAACAATGTTATACAAACTACTTAATATCTTAATCTGTGATTTTGCTTCTTAGAATCGATTGCCTTTCATTTACCTACAAGAAAGCCTCCTATGCAATGTTTTGTCTTTTCTAGTTCTCGGTTTTTACCATGGTTATCCTAAGCAAAAGCGATGCTGTAGATTTAGGCAAACGATTGTTTTTTCCTGTACTTTCCACTTCTAACCTCAGTGTCTCACATTTCATCAATGGTTAAAAAAAATAGTTGCTTGATCTTTTTGTACGAGTCTCAAGGAAAATGTTTTACACAGTTAACTGCCATCTAGTAATCACAAATTCTTATTTACATGTGATTTATTGTACAACCACATTAAAAGTTAACTCAAAATGGCTAAAAGTTATCCTTATATATATATGTAAAAGTTATCTATTTTGTACTGACAAAAATTTTCATTTTAATAAAAGTTATTTCTTCAAAATCACCAATAATGTAAAAAATTAATCATTTAAACCTTAAAATGTTTATCTATCATTTTTTTTAAATAATACAAAAATTAATCAAAACATAGTAAAAGTTACTCCTAGTTTACTGTACACCTTGTGCGTGCAAGACCTTTTGTCTGATAATAATCTCTACTTGTAGGGCAACAAAGCACCATACCGTGAGCTGGATTTAGATACACCTTTGAACCATTTGTTCGGTGGTTTAGTCATCTTGGAATACCCCGTTATTCGTGTTTTCCTCTCGTCAGACACCTATGATTTTGAAGTAGTTAAAGACGTCAGACCACCCCCTCCTCCAAGTTTCCGGGACTTCAACAGACCCGACAGAGATGAGTCTGCAAGTCCTGTAGGTGTTACCTTCAAAGAAGAAGAGATTGAAGAAGATGAATCAGTTCATGAACCTCAAATTATTATAGATCGTCTGAAAAGCTCAGAGAAAGTTCATACACATAAAACAAACCCGATTGGTGTTCAGATGATTGACAAGGAATGTAAAATTGAAAACGAAGAGGTATTTTCGTGCGATGTTGTTGGGAAGGAAGTTGAAATGTTGGATTCGAAAATTGAGGATTTCGATTTTGATCAAGAATTGATTGATGCGTATTCGTTTTTGATGGAAGAAAGCAACCCAGATGACTTTCTGAACTACAAAACTGAAGGTGAGGGTCATGTAGATAGTACTAATGTGTACTTTGGAGGTATGGAGGATTTAGAAGAGGGGGAAATTCCCAATTCTGAATAACCATATTATTCAAAAGTAGTTCATGTGTCATCTTTTGTAACAGTTATCTCTCCTTGAAGAAGTTATTTGTAGTAGCTTTTATTTTTGTTTATTTTGTAGTTTTGTGCGTAGTAAATTACATAGTTTAGAGTTTTTAGGTAACATCGCATTGCAATGCATTTTCTTATGCTTGCACGTAAAGATGGTTGTGTGTCGGGCCGAGTCGAGCCTATGGTCTGTGGGCGTGAACCGGCTCGGCTCATGCCAAACCCACTTGTAACGTGACAAGTTGGGCCTATAATTTCATAAATGAGGCCCATGGCCACGTGCCCTCATGACAGATTGGCTCAGCTGTCATACCTAATCCTAGTTTTACTCAATTTAGCGTACTTTGTTTTGTTGCGTCGTGCCTTATTGTGCC ACTATTTTATGTCAATCTTTATTTTGGTATTAAAAATTTAAAAATTATACAAGTACAATTGGAAAGAAAAGCTCATAAACCCTAAAACCAGCTTAAAAACCCCCACACCTCTCTGTTCTTCCCCTTTCTTCTTCCTCTCTCCTGTAATGGTAGCCATGGCAGAAGAGCTCCAATCCTCAGACCATCAACAGAAAAATGTCGCAAAATTACTATGCGAAGAGTGTAATTTAAAGGAATTCAAATACAAATGCCCAGCTTGCTTCCGCCGCACTTGCAGCCTTCCTTGCGTTAAGTCCCACAAGCAACTCTCTGGTTGTACTGGCAAAAAAACAATATCCGACATCATCCCCCTTTCTGAATTTGACGATTCTACACTTCTTTCTGATTATAATTTGTTGGAAGATGTGAAAAGGGTAGCTGATTCTGCCCAGCGAACGCGTGTGAAACTATGTGGTTATCATCCTCAATTTAGGCTCCCTTTCCATCTTAAAGCACTTCGGAGTGCTGCGGGGAGGAAAGGAACTAAGCTTTTGTTACTTCCTTCTGGGATGGCTAAAAGGGAGAATAATCAAACTAGATTCAATCAAAGGAAGAAATTTATCTCGTGGACGATTGAATGGCGATTTAATTCAACTGATGTTGTTTTGCTTGAACACGGGGTGCACGAAAGCACAACTTTGCGGTCAGTAATTGAGAAGCATCTGCAACCTAGTCCGTGGAGAAATAAGTTGAGGAGATTCTGTGAAGAACCTCTTGAAAATCTCAAGTTTTTTATTCGTAAATATCACAAGGGCAACAAAGCACCATACCGTGAGCTGGATTTAGATACACCTTTGAACCATTTGTTCGGTGGTTTAGTCATCTTGGAATACCCCGTTATTCGTGTTTTCCTCTCGTCAGACACCTATGATTTTGAAGTAGTTAAAGACGTCAGACCACCCCCTCCTCCAAGTTTCCGGGACTTCAACAGACCCGACAGAGATGAGTCTGCAAGTCCTGTAGGTGTTACCTTCAAAGAAGAAGAGATTGAAGAAGATGAATCAGTTCATGAACCTCAAATTATTATAGATCGTCTGAAAAGCTCAGAGAAAGTTCATACACATAAAACAAACCCGATTGGTGTTCAGATGATTGACAAGGAATGTAAAATTGAAAACGAAGAGGTATTTTCGTGCGATGTTGTTGGGAAGGAAGTTGAAATGTTGGATTCGAAAATTGAGGATTTCGATTTTGATCAAGAATTGATTGATGCGTATTCGTTTTTGATGGAAGAAAGCAACCCAGATGACTTTCTGAACTACAAAACTGAAGGTGAGGGTCATGTAGATAGTACTAATGTGTACTTTGGAGGTATGGAGGATTTAGAAGAGGGGGAAATTCCCAATTCTGAATAACCATATTATTCAAAAGTAGTTCATGTGTCATCTTTTGTAACAGTTATCTCTCCTTGAAGAAGTTATTTGTAGTAGCTTTTATTTTTGTTTATTTTGTAGTTTTGTGCGTAGTAAATTACATAGTTTAGAGTTTTTAGGTAACATCGCATTGCAATGCATTTTCTTATGCTTGCACGTAAAGATGGTTGTGTGTCGGGCCGAGTCGAGCCTATGGTCTGTGGGCGTGAACCGGCTCGGCTCATGCCAAACCCACTTGTAACGTGACAAGTTGGGCCTATAATTTCATAAATGAGGCCCATGGCCACGTGCCCTCATGACAGATTGGCTCAGCTGTCATACCTAATCCTAGTTTTACTCAATTTAGCGTACTTTGTTTTGTTGCGTCGTGCCTTATTGTGCC ATGGTAGCCATGGCAGAAGAGCTCCAATCCTCAGACCATCAACAGAAAAATGTCGCAAAATTACTATGCGAAGAGTGTAATTTAAAGGAATTCAAATACAAATGCCCAGCTTGCTTCCGCCGCACTTGCAGCCTTCCTTGCGTTAAGTCCCACAAGCAACTCTCTGGTTGTACTGGCAAAAAAACAATATCCGACATCATCCCCCTTTCTGAATTTGACGATTCTACACTTCTTTCTGATTATAATTTGTTGGAAGATGTGAAAAGGGTAGCTGATTCTGCCCAGCGAACGCGTGTGAAACTATGTGGTTATCATCCTCAATTTAGGCTCCCTTTCCATCTTAAAGCACTTCGGAGTGCTGCGGGGAGGAAAGGAACTAAGCTTTTGTTACTTCCTTCTGGGATGGCTAAAAGGGAGAATAATCAAACTAGATTCAATCAAAGGAAGAAATTTATCTCGTGGACGATTGAATGGCGATTTAATTCAACTGATGTTGTTTTGCTTGAACACGGGGTGCACGAAAGCACAACTTTGCGGTCAGTAATTGAGAAGCATCTGCAACCTAGTCCGTGGAGAAATAAGTTGAGGAGATTCTGTGAAGAACCTCTTGAAAATCTCAAGTTTTTTATTCGTAAATATCACAAGGGCAACAAAGCACCATACCGTGAGCTGGATTTAGATACACCTTTGAACCATTTGTTCGGTGGTTTAGTCATCTTGGAATACCCCGTTATTCGTGTTTTCCTCTCGTCAGACACCTATGATTTTGAAGTAGTTAAAGACGTCAGACCACCCCCTCCTCCAAGTTTCCGGGACTTCAACAGACCCGACAGAGATGAGTCTGCAAGTCCTGTAGGTGTTACCTTCAAAGAAGAAGAGATTGAAGAAGATGAATCAGTTCATGAACCTCAAATTATTATAGATCGTCTGAAAAGCTCAGAGAAAGTTCATACACATAAAACAAACCCGATTGGTGTTCAGATGATTGACAAGGAATGTAAAATTGAAAACGAAGAGGTATTTTCGTGCGATGTTGTTGGGAAGGAAGTTGAAATGTTGGATTCGAAAATTGAGGATTTCGATTTTGATCAAGAATTGATTGATGCGTATTCGTTTTTGATGGAAGAAAGCAACCCAGATGACTTTCTGAACTACAAAACTGAAGGTGAGGGTCATGTAGATAGTACTAATGTGTACTTTGGAGGTATGGAGGATTTAGAAGAGGGGGAAATTCCCAATTCTGAATAA MVAMAEELQSSDHQQKNVAKLLCEECNLKEFKYKCPACFRRTCSLPCVKSHKQLSGCTGKKTISDIIPLSEFDDSTLLSDYNLLEDVKRVADSAQRTRVKLCGYHPQFRLPFHLKALRSAAGRKGTKLLLLPSGMAKRENNQTRFNQRKKFISWTIEWRFNSTDVVLLEHGVHESTTLRSVIEKHLQPSPWRNKLRRFCEEPLENLKFFIRKYHKGNKAPYRELDLDTPLNHLFGGLVILEYPVIRVFLSSDTYDFEVVKDVRPPPPPSFRDFNRPDRDESASPVGVTFKEEEIEEDESVHEPQIIIDRLKSSEKVHTHKTNPIGVQMIDKECKIENEEVFSCDVVGKEVEMLDSKIEDFDFDQELIDAYSFLMEESNPDDFLNYKTEGEGHVDSTNVYFGGMEDLEEGEIPNSE Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12822.1 vs. NCBI nr
Match: gi|902217472|gb|KNA17734.1| (hypothetical protein SOVF_077490 [Spinacia oleracea]) HSP 1 Score: 828.2 bits (2138), Expect = 6.500e-237 Identity = 411/415 (99.04%), Postives = 412/415 (99.28%), Query Frame = 1
BLAST of Spo12822.1 vs. NCBI nr
Match: gi|731363874|ref|XP_010693667.1| (PREDICTED: box C/D snoRNA protein 1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 600.1 bits (1546), Expect = 2.900e-168 Identity = 319/426 (74.88%), Postives = 354/426 (83.10%), Query Frame = 1
BLAST of Spo12822.1 vs. NCBI nr
Match: gi|703123529|ref|XP_010102840.1| (hypothetical protein L484_007863 [Morus notabilis]) HSP 1 Score: 378.6 bits (971), Expect = 1.400e-101 Identity = 212/422 (50.24%), Postives = 272/422 (64.45%), Query Frame = 1
BLAST of Spo12822.1 vs. NCBI nr
Match: gi|823151323|ref|XP_012475489.1| (PREDICTED: putative box C/D snoRNA protein SPCC613.07 [Gossypium raimondii]) HSP 1 Score: 375.2 bits (962), Expect = 1.500e-100 Identity = 215/409 (52.57%), Postives = 268/409 (65.53%), Query Frame = 1
BLAST of Spo12822.1 vs. NCBI nr
Match: gi|747091315|ref|XP_011093382.1| (PREDICTED: box C/D snoRNA protein 1 [Sesamum indicum]) HSP 1 Score: 372.9 bits (956), Expect = 7.500e-100 Identity = 213/421 (50.59%), Postives = 272/421 (64.61%), Query Frame = 1
BLAST of Spo12822.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFI5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_077490 PE=4 SV=1) HSP 1 Score: 828.2 bits (2138), Expect = 4.500e-237 Identity = 411/415 (99.04%), Postives = 412/415 (99.28%), Query Frame = 1
BLAST of Spo12822.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BC53_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g067540 PE=4 SV=1) HSP 1 Score: 600.1 bits (1546), Expect = 2.000e-168 Identity = 319/426 (74.88%), Postives = 354/426 (83.10%), Query Frame = 1
BLAST of Spo12822.1 vs. UniProtKB/TrEMBL
Match: W9RJP7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007863 PE=4 SV=1) HSP 1 Score: 378.6 bits (971), Expect = 9.500e-102 Identity = 212/422 (50.24%), Postives = 272/422 (64.45%), Query Frame = 1
BLAST of Spo12822.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QZF8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G174800 PE=4 SV=1) HSP 1 Score: 375.2 bits (962), Expect = 1.100e-100 Identity = 215/409 (52.57%), Postives = 268/409 (65.53%), Query Frame = 1
BLAST of Spo12822.1 vs. UniProtKB/TrEMBL
Match: A0A061DVF2_THECC (HIT-type Zinc finger family protein, putative isoform 2 OS=Theobroma cacao GN=TCM_005940 PE=4 SV=1) HSP 1 Score: 372.1 bits (954), Expect = 8.900e-100 Identity = 211/414 (50.97%), Postives = 274/414 (66.18%), Query Frame = 1
BLAST of Spo12822.1 vs. ExPASy Swiss-Prot
Match: BCD1_PONAB (Box C/D snoRNA protein 1 OS=Pongo abelii GN=ZNHIT6 PE=2 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 3.700e-30 Identity = 81/263 (30.80%), Postives = 127/263 (48.29%), Query Frame = 1
BLAST of Spo12822.1 vs. ExPASy Swiss-Prot
Match: BCD1_HUMAN (Box C/D snoRNA protein 1 OS=Homo sapiens GN=ZNHIT6 PE=1 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 4.100e-29 Identity = 80/263 (30.42%), Postives = 126/263 (47.91%), Query Frame = 1
BLAST of Spo12822.1 vs. ExPASy Swiss-Prot
Match: BCD1_MOUSE (Box C/D snoRNA protein 1 OS=Mus musculus GN=Znhit6 PE=1 SV=2) HSP 1 Score: 127.9 bits (320), Expect = 2.600e-28 Identity = 74/250 (29.60%), Postives = 126/250 (50.40%), Query Frame = 1
BLAST of Spo12822.1 vs. ExPASy Swiss-Prot
Match: BCD1_SCHPO (Putative box C/D snoRNA protein SPCC613.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC613.07 PE=1 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 1.100e-15 Identity = 73/331 (22.05%), Postives = 138/331 (41.69%), Query Frame = 1
BLAST of Spo12822.1 vs. ExPASy Swiss-Prot
Match: BCD1_YEAST (Box C/D snoRNA protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BCD1 PE=1 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 2.900e-11 Identity = 47/165 (28.48%), Postives = 75/165 (45.45%), Query Frame = 1
BLAST of Spo12822.1 vs. TAIR (Arabidopsis)
Match: AT1G04945.3 (HIT-type Zinc finger family protein) HSP 1 Score: 337.4 bits (864), Expect = 1.200e-92 Identity = 188/405 (46.42%), Postives = 257/405 (63.46%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12822.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo12822.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo12822.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo12822.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|