Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTCCAAAGCTCGACCCTTCCCAAGTTGTCGAAGTTTACGTCCGAGTGACTGGTGGTGAAGTCGGCGCCGCCTCCTCACTCGCTCCCAAGATCGGTCCACTCGGTCTCTCCCCCAAGAAGATCGGAGAAGACATCGCCAAGGAAACCGCCAAGGACTGGAAGGGTCTCCGTGTCACCGTCAAGCTTACCGTCCAAAACCGTCAGGCTAAAGTTAGCGTTGTTCCTTCCGCCGCTGCTCTGGTTATCAAGGCGTTGAAGGAGCCGGAGCGCGACCGCAAGAAGGTGAAGAACATCAAGCACACTGGTAACATCTCCATTGAGGACGTCATCGAGATTGCTAAGATTATGAAGCCTCGATCTATGGCGAAGGAATTGAAGGGCACTGTGAAGGAGATTCTGGGTACTTGTGTTTCTGTTGGGTGTACTGTTGATGGCAAGGATCCTAAGGATTTGCAGCAGGAGATTGCTGATGACGAGGTTGAAATTCCTGAGAACTAA ATGCCTCCAAAGCTCGACCCTTCCCAAGTTGTCGAAGTTTACGTCCGAGTGACTGGTGGTGAAGTCGGCGCCGCCTCCTCACTCGCTCCCAAGATCGGTCCACTCGGTCTCTCCCCCAAGAAGATCGGAGAAGACATCGCCAAGGAAACCGCCAAGGACTGGAAGGGTCTCCGTGTCACCGTCAAGCTTACCGTCCAAAACCGTCAGGCTAAAGTTAGCGTTGTTCCTTCCGCCGCTGCTCTGGTTATCAAGGCGTTGAAGGAGCCGGAGCGCGACCGCAAGAAGGTGAAGAACATCAAGCACACTGGTAACATCTCCATTGAGGACGTCATCGAGATTGCTAAGATTATGAAGCCTCGATCTATGGCGAAGGAATTGAAGGGCACTGTGAAGGAGATTCTGGGTACTTGTGTTTCTGTTGGGTGTACTGTTGATGGCAAGGATCCTAAGGATTTGCAGCAGGAGATTGCTGATGACGAGGTTGAAATTCCTGAGAACTAA ATGCCTCCAAAGCTCGACCCTTCCCAAGTTGTCGAAGTTTACGTCCGAGTGACTGGTGGTGAAGTCGGCGCCGCCTCCTCACTCGCTCCCAAGATCGGTCCACTCGGTCTCTCCCCCAAGAAGATCGGAGAAGACATCGCCAAGGAAACCGCCAAGGACTGGAAGGGTCTCCGTGTCACCGTCAAGCTTACCGTCCAAAACCGTCAGGCTAAAGTTAGCGTTGTTCCTTCCGCCGCTGCTCTGGTTATCAAGGCGTTGAAGGAGCCGGAGCGCGACCGCAAGAAGGTGAAGAACATCAAGCACACTGGTAACATCTCCATTGAGGACGTCATCGAGATTGCTAAGATTATGAAGCCTCGATCTATGGCGAAGGAATTGAAGGGCACTGTGAAGGAGATTCTGGGTACTTGTGTTTCTGTTGGGTGTACTGTTGATGGCAAGGATCCTAAGGATTTGCAGCAGGAGATTGCTGATGACGAGGTTGAAATTCCTGAGAACTAA MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPRSMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12759.1 vs. NCBI nr
Match: gi|902217667|gb|KNA17853.1| (hypothetical protein SOVF_076720 [Spinacia oleracea]) HSP 1 Score: 318.9 bits (816), Expect = 5.100e-84 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1
BLAST of Spo12759.1 vs. NCBI nr
Match: gi|731356205|ref|XP_010689548.1| (PREDICTED: 60S ribosomal protein L12-1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 307.0 bits (785), Expect = 2.000e-80 Identity = 156/166 (93.98%), Postives = 164/166 (98.80%), Query Frame = 1
BLAST of Spo12759.1 vs. NCBI nr
Match: gi|731345787|ref|XP_010684100.1| (PREDICTED: 60S ribosomal protein L12-1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 303.5 bits (776), Expect = 2.200e-79 Identity = 153/166 (92.17%), Postives = 163/166 (98.19%), Query Frame = 1
BLAST of Spo12759.1 vs. NCBI nr
Match: gi|976902840|gb|KVH90774.1| (Ribosomal protein L11 [Cynara cardunculus var. scolymus]) HSP 1 Score: 302.8 bits (774), Expect = 3.800e-79 Identity = 154/166 (92.77%), Postives = 164/166 (98.80%), Query Frame = 1
BLAST of Spo12759.1 vs. NCBI nr
Match: gi|40287508|gb|AAR83868.1| (60S ribosomal protein L12 [Capsicum annuum]) HSP 1 Score: 302.0 bits (772), Expect = 6.500e-79 Identity = 154/166 (92.77%), Postives = 162/166 (97.59%), Query Frame = 1
BLAST of Spo12759.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S456_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_002290 PE=3 SV=1) HSP 1 Score: 318.9 bits (816), Expect = 3.600e-84 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1
BLAST of Spo12759.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BQ55_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g207930 PE=3 SV=1) HSP 1 Score: 307.0 bits (785), Expect = 1.400e-80 Identity = 156/166 (93.98%), Postives = 164/166 (98.80%), Query Frame = 1
BLAST of Spo12759.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C2D9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g162160 PE=3 SV=1) HSP 1 Score: 303.5 bits (776), Expect = 1.600e-79 Identity = 153/166 (92.17%), Postives = 163/166 (98.19%), Query Frame = 1
BLAST of Spo12759.1 vs. UniProtKB/TrEMBL
Match: A0A118JTH4_CYNCS (Ribosomal protein L11 OS=Cynara cardunculus var. scolymus GN=Ccrd_007216 PE=3 SV=1) HSP 1 Score: 302.8 bits (774), Expect = 2.700e-79 Identity = 154/166 (92.77%), Postives = 164/166 (98.80%), Query Frame = 1
BLAST of Spo12759.1 vs. UniProtKB/TrEMBL
Match: Q6RJY1_CAPAN (60S ribosomal protein L12 OS=Capsicum annuum PE=2 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 4.500e-79 Identity = 154/166 (92.77%), Postives = 162/166 (97.59%), Query Frame = 1
BLAST of Spo12759.1 vs. ExPASy Swiss-Prot
Match: RL121_ARATH (60S ribosomal protein L12-1 OS=Arabidopsis thaliana GN=RPL12A PE=2 SV=2) HSP 1 Score: 294.7 bits (753), Expect = 6.500e-79 Identity = 149/166 (89.76%), Postives = 160/166 (96.39%), Query Frame = 1
BLAST of Spo12759.1 vs. ExPASy Swiss-Prot
Match: RL122_ARATH (60S ribosomal protein L12-2 OS=Arabidopsis thaliana GN=RPL12B PE=1 SV=1) HSP 1 Score: 293.5 bits (750), Expect = 1.400e-78 Identity = 148/166 (89.16%), Postives = 160/166 (96.39%), Query Frame = 1
BLAST of Spo12759.1 vs. ExPASy Swiss-Prot
Match: RL12_PRUAR (60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1) HSP 1 Score: 291.2 bits (744), Expect = 7.200e-78 Identity = 151/164 (92.07%), Postives = 157/164 (95.73%), Query Frame = 1
BLAST of Spo12759.1 vs. ExPASy Swiss-Prot
Match: RL123_ARATH (60S ribosomal protein L12-3 OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=1) HSP 1 Score: 289.7 bits (740), Expect = 2.100e-77 Identity = 146/164 (89.02%), Postives = 158/164 (96.34%), Query Frame = 1
BLAST of Spo12759.1 vs. ExPASy Swiss-Prot
Match: RL12_CHLRE (60S ribosomal protein L12 (Fragment) OS=Chlamydomonas reinhardtii GN=RPL12 PE=2 SV=1) HSP 1 Score: 237.3 bits (604), Expect = 1.200e-61 Identity = 121/156 (77.56%), Postives = 137/156 (87.82%), Query Frame = 1
BLAST of Spo12759.1 vs. TAIR (Arabidopsis)
Match: AT2G37190.1 (Ribosomal protein L11 family protein) HSP 1 Score: 294.7 bits (753), Expect = 3.700e-80 Identity = 149/166 (89.76%), Postives = 160/166 (96.39%), Query Frame = 1
BLAST of Spo12759.1 vs. TAIR (Arabidopsis)
Match: AT3G53430.1 (Ribosomal protein L11 family protein) HSP 1 Score: 293.5 bits (750), Expect = 8.100e-80 Identity = 148/166 (89.16%), Postives = 160/166 (96.39%), Query Frame = 1
BLAST of Spo12759.1 vs. TAIR (Arabidopsis)
Match: AT5G60670.1 (Ribosomal protein L11 family protein) HSP 1 Score: 289.7 bits (740), Expect = 1.200e-78 Identity = 146/164 (89.02%), Postives = 158/164 (96.34%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12759.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo12759.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo12759.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo12759.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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