Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTATGGTTATACTACATGTCACATTGGAACTCTCATTAGCTAAACTACTTCTCAAACCCATAGAAGATGGGAAAAAAAAGAAAAAAAAAGGAAGAAAGACCCACCACTAACCTCATCAATACCCTCGCTCGCATTCCTTAATATCCCCTCCTCCCACATCTTCGATTCCATTTTCACACACACCAAAATACACTCTACTATGCACATCACTTCCTTCTCTTTCTCCTAAAATCTCCCACCCTTCCATTCTCTTCTCTCTTTCTCTCTCCTAATGACACCTTTGCTCGGTCTCATCTTCATGGGTATCCTCACTTTCATCCCTCCCGACTCCTCCGCATCTAAGCCAACCAAACAACCCCGTAAACAACACCACCATAAAACAGAACCACAACAACAACAACAACAACAACAACAACCAAAACCCAAGTCGAAATCGAAACCGAAACCGAAGCCAAAGCCGAAACAAGCCTCGTCATGGGACCAAATAAAGAACCTTCTAACTTGCAAGCAAGTAGAAGGTTCTAGAGTCCACGACCCATCAAAACCCGCCGTATCTTCATCTTGTGGGTCAATGTGTAGTTTCCGTGACGTGGTTCACGGGAATACTAGAGTTGTTCACCGGTCTGATAACTCTTCCCCTGAAAGTAGCTCACTAGGTCAGGAAGCTCGGCTCCTGCACCGGCGTAAGACCGGCCCAGGCTCCGTTTCCAGTCGGTCCTTGTCGGGTTCGGTTAGATCGGGCACCAGTGTCACCACAACACATTCTGTGTCCTCTAGAGGAATGCCCTTGAGGAAGTTGTCCGGGTGTTATGAGTGCCATATGATTGTTGATCCTAGCAGGTTTGTCACTTTTTTAAAATTTAAATATGGAGTACTAATTATTAAATATCTTTATAATGAATATGCTGAAATTTAATCAAATTCTTGTAAAAATAGTTTCATTTTTATTTTACTGTAATTGAATTATCAGGTACCCAATAATACCAAGGTCAACAGTTTGTGCATGCCCACATTGTGGAGAAGTTTTTCCAAAAATTGAAAGCTTGGAGCATCATCAAGCAGTTAGGCATGCAGGTAATTCATTTCTAATTACTTTAATTATATTCTCACAAATAAATTACTCGGTACTAAATAAACACTTTTAAAAAAAAATCAATTTTTATTATATGAAAAAGAAACCGGAGACAGATACACAATTCACGGTCGTTCCAAGAGTGAACTAGGCCAATTTTTCCGCCGGATTATTGGTAATGTATGTGAAGTATAACTTAATCTAAATTACCCGTAAGGTGCTACTCGTGGATCAAAAATTTGAGAACGGAGTAAGTTTGACGTGTATAGACATATTTATGGTGGTGTACTCGTGGTCGTTGGCATATTGGATTCAAATATTAATATGGGAAATGAATGTCATGTCAGTGCTTTAAAGGAGTAAGGTACTTTTCTCAAAAACAAATCCAATGTCCTACCATAAATTACACTGATATTTATTTAAGGATAACAAATTAGAATTGTGCTCTAAGTAGAAAGCCGGTAGTTGAACAGTGCGTCTTTATTTTTCTGGTCTCTTTAATTTGATTCACCACATTAGTAATTTAGTAGTATTTCCTCTTGTCAAACCATGCTATACTACAGTATTATTGGTACATACCAAGTGTTATACAGTCAAACAGACAAAAGTTTTGTCATAATTATGTCTCCTTAAATATGCACCCCTTCGCTTTAATTAAGAAACCTATGGTCTGAGATATACCAAGTATTAGTTTCTAAATAAATGTGTGTTTTCTTTACCTTAAAAAAATATTTAGATGAATTAAGTTACAATCAGGTTTTATAAAGTCAATAAGTTTAACTGAGGTCTTATAAATTTACATTTCTAAATTTATTCTCTTGTAATCATGTTCAATAACTTTCAAACACGTTATATCAGGTTTATCAAATTAAATCAATTTCAATAAATTAAAGTTTTTTCCAGTCTAGAGAAGGCCCCAAGTCGAGTAAGAATTTATGTTTAGATCAAGGGGTAAAGAAGTTGTCATAGTTTAATCAATGGTTTTGGGTTCCACCTATGAATAAAATCTTTGTATGAGAATATCATATGGTTTACCAAAAAATCTTTGTAAAGTGAGATTTTACACTCAAAAAATTAAGGAGGGAGTTGGGAAAGTAATAAAGTCTATGATAACGAAATAAGTAACTATACTATACTCAAAATAAATTAAACTATATTGAGATACTAACCGTTTAATTAAGAGAGTTATTTGGACCACGTAAGAGTAAATTCAAGCAAACAATGAATTAAATGAATCGGAGTAAATAGGCCCTACCGACAACGCATGCTCCTAAGAGGTGAATCTAAAGATTAAACAATTTAAGCACTAATGGCTCCTTTAATTTGATAATCGGCTATAAATGATGTTAATGAGAATACTTGTAAGTAAATTTGTAAGGAAAATTAATATTCATTCTCGTGTTAAGGTTAGTTCACTCAAAATTATCTCTTTTTATTTTTTTAAAAATTTTCGTTACTATATATCCATTGTCATTTAGGGAGTTATATTGGGTGAGAAATACAAATTTATGAAGAAAAATATTGAATTTGTGATATGTATTACCACCAATATTATGATGTTTTATCTTTTCAAATAAAACTAAGATTTATTCTAATTCCAATCATTTATTACCGGCTATCAAATGAATCGTAAGGAATTTGGGTACGAATTCAATAAATGAAGATTTCAAACTTCATTCGTTTCGTAACTAATTACTCTGTCACATAATTTATTGAAGCACACTTATATCCATATGTGAAATGTCACACATTATTGATAATAGAATAGAAAAATACCAACCTACAAGCTTAGAAAGTTGCTCATGTTATTATTATGAGTGATTTTAGCATGAAATCTCGTACAATCTTGTAAACTGACCGGACTTTCCTTATCCAATGCTAACGCCACGCATCATCATGTCCCTAATCATGAAATATTACGCATGTTTTTTACATAAGCAATGAATTTAATATAAAATGATAAAGTTACATCAAAACTAGTATTAGAGTATACCTTATTGGGTATTATTTGTTTGTAACAATCGGATATGGTGGATAGTGTCGGAGCTGGGACCGGAGGATTCGGGTAGAAATATAGTGGAAATAATATTCAAGTCAAGCTGGCTAAAAAAGGATAACCCAATATGCAAGATCGAACGGATACTAAAGGTTGAAAATACACAAAGAACAATCCAACGGTTCGAAGATTGCAGAGATATGGTGAAGTTGAGAGCAAATAACAACACAAAGAAGAATCCAAGATGCGCCGCTGACGGGAATGAGCTACTAAGATTCCATTGTACTACTCTTACTTGTTCTCTGGGCGCACGTGCTTCTTCTAACCTTTGTGGTTCCGTTCCTGGTTGCGGCGTTTGTACCATTATTAGGTATTTTCTTACTTTTCTCTTTTACCACTTTTCTTTACACCTTTTTATTTCTAATTTGGGTTTGTCTAATTTTGCATAATTACTTGGTTACATGTGACAAAGATGAGATGTTGGATAAGATAGCCCATGAAACTAATAAGTTGCATGTTCGGCAGGATTAGTAATTTTTTAGCCACTTTTTAGGAATGAATCAGATCGATACTATTCACATAGTAGTAACTAGTGCAACGACATTACTACAATACTTCGTAAAAAGTAAACAAGTCTAACTTCCCAGTGTACAGGCCAGAAAGAATGATGTTACCAGGTTTGATCAGATACTCGTGTTGGATATAAATACATGTACAAGAGTCCAATACGTCTATTTTGTCAAAGAAAAAAACTATATGATTTTAAAAATAAAATGTCTTAACCCGAGTATTCAGGTTCTTACACAAATACTTGTAGTGAAATGAAGAGAATGATGAGAGTAACATAGTATTTGGCACAATACATGTAGTTGAATTGATGCATGGACAACGTCTTTCATTTTCCTTGTGCAAAATGTAAACTGTAGTGGCGCACAATGAACACTACAATACAATGAGATACGAGCATTAGACAAGTACAATAACATAGGACAAACTATTTTGTGTTCCTTGACTTAATCATTTATATGTATTGGAACATTATTTCAACTTTAACTTTTTATTATTTTGGCATTTTGTTCTCAACATTTTGCAATTCACATCATCTAAAAACACGAAAACTATTGTCCAATGACAAAGCACTTACCTTAGCTTGTTTTCATTCATTTAATTTTGTAACAAAATTATTAACAATAATATATATATACTAAGTTAATTTTAATTGTGGGTGGACAATACTAAATACTTAAATAGGCATGGGTTTCAAGGAAACAAGGGAGTGAGGACAACAGCGAGTAGTGGAAAGGCCCATGATTCGTTATTAGATTGTACGGATGGACGTAAGGCAATGCTTGTGTGCCGTGTAATAGCTGGTAGAGTGAAGCGCAGCGCCAACGATGCTCCGGCAGAAGAGGAGATCATGTCTCTTGACGGTCAATCCGGTAACACCACTTATGACTCGGTAGCCGGGTCTTCCGGAATCTACTCTAGTCTAGAAGACTTGGTGGTCACTAATCCCAAGGCTATTCTTCCTTGCTTTGTAGTCATTTATAAAACCCTCACCACAACCTAACTTAATTAATCGTCGCATTTTATTAATGTCGGCTAACTTGCAGAAAAAAAAGGTTATCCATGCCTCGACCTTAAAAAGTACTTGTGTATTTTGATCCCGTAAATTATATTTAAGTAGTGTAACAAGTTAATTAGAATCTTTTTTTCTTGTTATTGTTGTTGTATGTGGTTGTACATATAATTAATTGTACGTATAATGTATTTACGTGTTTTTTCATTTGGTGTATTTTATTATTTAGATTGTTAAATTGATTTAGTTCAACCGATCAACTAAATGTTAGTGTGTTAGATTTGTCATATTCTTTGACCATATTTTCAACAACTACAAAATATGTG ATGTATGGTTATACTACATGTCACATTGGAACTCTCATTAGCTAAACTACTTCTCAAACCCATAGAAGATGGGAAAAAAAAGAAAAAAAAAGGAAGAAAGACCCACCACTAACCTCATCAATACCCTCGCTCGCATTCCTTAATATCCCCTCCTCCCACATCTTCGATTCCATTTTCACACACACCAAAATACACTCTACTATGCACATCACTTCCTTCTCTTTCTCCTAAAATCTCCCACCCTTCCATTCTCTTCTCTCTTTCTCTCTCCTAATGACACCTTTGCTCGGTCTCATCTTCATGGGTATCCTCACTTTCATCCCTCCCGACTCCTCCGCATCTAAGCCAACCAAACAACCCCGTAAACAACACCACCATAAAACAGAACCACAACAACAACAACAACAACAACAACAACCAAAACCCAAGTCGAAATCGAAACCGAAACCGAAGCCAAAGCCGAAACAAGCCTCGTCATGGGACCAAATAAAGAACCTTCTAACTTGCAAGCAAGTAGAAGGTTCTAGAGTCCACGACCCATCAAAACCCGCCGTATCTTCATCTTGTGGGTCAATGTGTAGTTTCCGTGACGTGGTTCACGGGAATACTAGAGTTGTTCACCGGTCTGATAACTCTTCCCCTGAAAGTAGCTCACTAGGTCAGGAAGCTCGGCTCCTGCACCGGCGTAAGACCGGCCCAGGCTCCGTTTCCAGTCGGTCCTTGTCGGGTTCGGTTAGATCGGGCACCAGTGTCACCACAACACATTCTGTGTCCTCTAGAGGAATGCCCTTGAGGAAGTTGTCCGGGTGTTATGAGTGCCATATGATTGTTGATCCTAGCAGGTACCCAATAATACCAAGGTCAACAGTTTGTGCATGCCCACATTGTGGAGAAGTTTTTCCAAAAATTGAAAGCTTGGAGCATCATCAAGCAGTTAGGCATGCAGTGTCGGAGCTGGGACCGGAGGATTCGGGTAGAAATATAGTGGAAATAATATTCAAGTCAAGCTGGCTAAAAAAGGATAACCCAATATGCAAGATCGAACGGATACTAAAGGTTGAAAATACACAAAGAACAATCCAACGGTTCGAAGATTGCAGAGATATGGTGAAGTTGAGAGCAAATAACAACACAAAGAAGAATCCAAGATGCGCCGCTGACGGGAATGAGCTACTAAGATTCCATTGTACTACTCTTACTTGTTCTCTGGGCGCACGTGCTTCTTCTAACCTTTGTGGTTCCGTTCCTGGTTGCGGCGTTTGTACCATTATTAGGCATGGGTTTCAAGGAAACAAGGGAGTGAGGACAACAGCGAGTAGTGGAAAGGCCCATGATTCGTTATTAGATTGTACGGATGGACGTAAGGCAATGCTTGTGTGCCGTGTAATAGCTGGTAGAGTGAAGCGCAGCGCCAACGATGCTCCGGCAGAAGAGGAGATCATGTCTCTTGACGGTCAATCCGGTAACACCACTTATGACTCGGTAGCCGGGTCTTCCGGAATCTACTCTAGTCTAGAAGACTTGGTGGTCACTAATCCCAAGGCTATTCTTCCTTGCTTTGTAGTCATTTATAAAACCCTCACCACAACCTAACTTAATTAATCGTCGCATTTTATTAATGTCGGCTAACTTGCAGAAAAAAAAGGTTATCCATGCCTCGACCTTAAAAAGTACTTGTGTATTTTGATCCCGTAAATTATATTTAAGTAGTGTAACAAGTTAATTAGAATCTTTTTTTCTTGTTATTGTTGTTGTATGTGGTTGTACATATAATTAATTGTACGTATAATGTATTTACGTGTTTTTTCATTTGGTGTATTTTATTATTTAGATTGTTAAATTGATTTAGTTCAACCGATCAACTAAATGTTAGTGTGTTAGATTTGTCATATTCTTTGACCATATTTTCAACAACTACAAAATATGTG ATGACACCTTTGCTCGGTCTCATCTTCATGGGTATCCTCACTTTCATCCCTCCCGACTCCTCCGCATCTAAGCCAACCAAACAACCCCGTAAACAACACCACCATAAAACAGAACCACAACAACAACAACAACAACAACAACAACCAAAACCCAAGTCGAAATCGAAACCGAAACCGAAGCCAAAGCCGAAACAAGCCTCGTCATGGGACCAAATAAAGAACCTTCTAACTTGCAAGCAAGTAGAAGGTTCTAGAGTCCACGACCCATCAAAACCCGCCGTATCTTCATCTTGTGGGTCAATGTGTAGTTTCCGTGACGTGGTTCACGGGAATACTAGAGTTGTTCACCGGTCTGATAACTCTTCCCCTGAAAGTAGCTCACTAGGTCAGGAAGCTCGGCTCCTGCACCGGCGTAAGACCGGCCCAGGCTCCGTTTCCAGTCGGTCCTTGTCGGGTTCGGTTAGATCGGGCACCAGTGTCACCACAACACATTCTGTGTCCTCTAGAGGAATGCCCTTGAGGAAGTTGTCCGGGTGTTATGAGTGCCATATGATTGTTGATCCTAGCAGGTACCCAATAATACCAAGGTCAACAGTTTGTGCATGCCCACATTGTGGAGAAGTTTTTCCAAAAATTGAAAGCTTGGAGCATCATCAAGCAGTTAGGCATGCAGTGTCGGAGCTGGGACCGGAGGATTCGGGTAGAAATATAGTGGAAATAATATTCAAGTCAAGCTGGCTAAAAAAGGATAACCCAATATGCAAGATCGAACGGATACTAAAGGTTGAAAATACACAAAGAACAATCCAACGGTTCGAAGATTGCAGAGATATGGTGAAGTTGAGAGCAAATAACAACACAAAGAAGAATCCAAGATGCGCCGCTGACGGGAATGAGCTACTAAGATTCCATTGTACTACTCTTACTTGTTCTCTGGGCGCACGTGCTTCTTCTAACCTTTGTGGTTCCGTTCCTGGTTGCGGCGTTTGTACCATTATTAGGCATGGGTTTCAAGGAAACAAGGGAGTGAGGACAACAGCGAGTAGTGGAAAGGCCCATGATTCGTTATTAGATTGTACGGATGGACGTAAGGCAATGCTTGTGTGCCGTGTAATAGCTGGTAGAGTGAAGCGCAGCGCCAACGATGCTCCGGCAGAAGAGGAGATCATGTCTCTTGACGGTCAATCCGGTAACACCACTTATGACTCGGTAGCCGGGTCTTCCGGAATCTACTCTAGTCTAGAAGACTTGGTGGTCACTAATCCCAAGGCTATTCTTCCTTGCTTTGTAGTCATTTATAAAACCCTCACCACAACCTAA MTPLLGLIFMGILTFIPPDSSASKPTKQPRKQHHHKTEPQQQQQQQQQPKPKSKSKPKPKPKPKQASSWDQIKNLLTCKQVEGSRVHDPSKPAVSSSCGSMCSFRDVVHGNTRVVHRSDNSSPESSSLGQEARLLHRRKTGPGSVSSRSLSGSVRSGTSVTTTHSVSSRGMPLRKLSGCYECHMIVDPSRYPIIPRSTVCACPHCGEVFPKIESLEHHQAVRHAVSELGPEDSGRNIVEIIFKSSWLKKDNPICKIERILKVENTQRTIQRFEDCRDMVKLRANNNTKKNPRCAADGNELLRFHCTTLTCSLGARASSNLCGSVPGCGVCTIIRHGFQGNKGVRTTASSGKAHDSLLDCTDGRKAMLVCRVIAGRVKRSANDAPAEEEIMSLDGQSGNTTYDSVAGSSGIYSSLEDLVVTNPKAILPCFVVIYKTLTTT Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12650.1 vs. NCBI nr
Match: gi|902173906|gb|KNA08322.1| (hypothetical protein SOVF_163300 [Spinacia oleracea]) HSP 1 Score: 859.4 bits (2219), Expect = 2.800e-246 Identity = 438/439 (99.77%), Postives = 438/439 (99.77%), Query Frame = 1
BLAST of Spo12650.1 vs. NCBI nr
Match: gi|731367093|ref|XP_010695422.1| (PREDICTED: uncharacterized protein LOC104908063 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 717.6 bits (1851), Expect = 1.300e-203 Identity = 375/441 (85.03%), Postives = 397/441 (90.02%), Query Frame = 1
BLAST of Spo12650.1 vs. NCBI nr
Match: gi|225458001|ref|XP_002276294.1| (PREDICTED: uncharacterized protein LOC100250572 [Vitis vinifera]) HSP 1 Score: 566.2 bits (1458), Expect = 4.900e-158 Identity = 311/442 (70.36%), Postives = 345/442 (78.05%), Query Frame = 1
BLAST of Spo12650.1 vs. NCBI nr
Match: gi|920705860|gb|KOM49085.1| (hypothetical protein LR48_Vigan07g278900 [Vigna angularis]) HSP 1 Score: 556.2 bits (1432), Expect = 5.100e-155 Identity = 311/436 (71.33%), Postives = 342/436 (78.44%), Query Frame = 1
BLAST of Spo12650.1 vs. NCBI nr
Match: gi|950983231|ref|XP_014502723.1| (PREDICTED: uncharacterized protein LOC106763069 [Vigna radiata var. radiata]) HSP 1 Score: 552.0 bits (1421), Expect = 9.500e-154 Identity = 308/436 (70.64%), Postives = 340/436 (77.98%), Query Frame = 1
BLAST of Spo12650.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QM51_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_163300 PE=4 SV=1) HSP 1 Score: 859.4 bits (2219), Expect = 1.900e-246 Identity = 438/439 (99.77%), Postives = 438/439 (99.77%), Query Frame = 1
BLAST of Spo12650.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B8R3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g124790 PE=4 SV=1) HSP 1 Score: 717.6 bits (1851), Expect = 9.100e-204 Identity = 375/441 (85.03%), Postives = 397/441 (90.02%), Query Frame = 1
BLAST of Spo12650.1 vs. UniProtKB/TrEMBL
Match: F6H081_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g14130 PE=4 SV=1) HSP 1 Score: 566.2 bits (1458), Expect = 3.400e-158 Identity = 311/442 (70.36%), Postives = 345/442 (78.05%), Query Frame = 1
BLAST of Spo12650.1 vs. UniProtKB/TrEMBL
Match: A0A0L9V1U9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g278900 PE=4 SV=1) HSP 1 Score: 556.2 bits (1432), Expect = 3.500e-155 Identity = 311/436 (71.33%), Postives = 342/436 (78.44%), Query Frame = 1
BLAST of Spo12650.1 vs. UniProtKB/TrEMBL
Match: A0A0S3RQG4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G291300 PE=4 SV=1) HSP 1 Score: 556.2 bits (1432), Expect = 3.500e-155 Identity = 311/436 (71.33%), Postives = 342/436 (78.44%), Query Frame = 1
BLAST of Spo12650.1 vs. TAIR (Arabidopsis)
Match: AT1G75710.1 (C2H2-like zinc finger protein) HSP 1 Score: 499.6 bits (1285), Expect = 2.000e-141 Identity = 295/469 (62.90%), Postives = 334/469 (71.22%), Query Frame = 1
BLAST of Spo12650.1 vs. TAIR (Arabidopsis)
Match: AT4G27240.1 (zinc finger (C2H2 type) family protein) HSP 1 Score: 208.0 bits (528), Expect = 1.200e-53 Identity = 158/436 (36.24%), Postives = 230/436 (52.75%), Query Frame = 1
BLAST of Spo12650.1 vs. TAIR (Arabidopsis)
Match: AT5G54630.1 (zinc finger protein-related) HSP 1 Score: 208.0 bits (528), Expect = 1.200e-53 Identity = 117/250 (46.80%), Postives = 160/250 (64.00%), Query Frame = 1
BLAST of Spo12650.1 vs. TAIR (Arabidopsis)
Match: AT2G29660.1 (zinc finger (C2H2 type) family protein) HSP 1 Score: 174.9 bits (442), Expect = 1.100e-43 Identity = 108/267 (40.45%), Postives = 155/267 (58.05%), Query Frame = 1
BLAST of Spo12650.1 vs. TAIR (Arabidopsis)
Match: AT1G11490.1 (zinc finger (C2H2 type) family protein) HSP 1 Score: 149.4 bits (376), Expect = 5.000e-36 Identity = 135/388 (34.79%), Postives = 193/388 (49.74%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12650.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo12650.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo12650.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo12650.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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