Spo12590 (gene) | SpinachBase

Overview


Name	Spo12590
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	F-box family protein
Location	SpoScf_03298 : 11089 .. 12704 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCCTTTTTCTCCGAAATTTCTCGGTTCTTCCTCACTAAGTAAATAAAAAATAAAATAAAAAACACGTCTTTATTTAAAAAAGAGAAAATAAACTGAGCATATCTTTTCCTTCCAATATTTTGAAATATAAATATTGTGAGTGTCACCTAAATTTAGCAGTTTAATCCCAGTTTACAAAATTAAGTTGAACTACTCTACTTCAAAATCTTTCACTCTCTACATTTTTATTCACCAGCAAACACAGTAATTTCGGGACTACTATTTAAGCGTATTCAGCGGTTACGAAATCTCTCATTAAATTCCCTCTCCTAAATTTCTGGTACACCTTCTCTCTCTCTCCTCAATTTGTGCTCGTTTCTTCTGGACATTTTTGCAACCTTTTGGCTCATTCCTGGAAGTTTTTGGCTCATTTCTGGAAGTTTTTGGTATTGAAGCAAGGAAAATGGCGTTGACGAAGAGCTTGAGTTTCTCTCTAGGAAGGAAGAGGATATTAATTTCTAAAAATAGCTGTGATTTGGAGCAATTTTGTGCTGATTTTGAGCCGTATTCACCTGTGAAGAGACACTGTTACAGTAGTGATGAAGATGACGAAACGTTTCGAGTAAAGGATACGAGTTCTCTTCTTGAAGCTCTGCCTCAAGAAATTCTGGTGAGTTTTTGCGGAAATTCGTCTATTTAATTGAAACTTGAAGTGAAATTGATTGAAATTTGGTGTGAAATGAATTGAAATTAATTGCTTTGTTTATTAAATTTGTTGCAGATCAAAGTAATTTGTGGTGTGGATCACGATGACCTAAAACAGCTTTTCTTAGTTTCTAAAACAGTTCGCGATTCGGTGAGTTAATTAATTCGATTTTAATTTTAATTTCAGTTCAAATTGCAGTTTCAGTTGACTAATTCAACGAAATGAGATGAAATTAGGTTTAACATTTGTTTTTTATTATTCGCAGACGATTATCGCGAAGCAATCGCATTTCGCATTCAGTACACCGGCGAAGATGAAAGCGTTTAGAAATTCAATTGATATGTTGAATAATGAAATGGATTTGGATGAAATTGAAGCTCCGAATGCTCCGAAACAAGCTCGGAAACTGAATCGTCCTCGAATTAACAAAAAAAGACTGAGCGATATTTCCGTCGCTTTGTTCTCCGACGGAGAAGAGGAAGAGCAGAGATGGACTAGAAGAAGTTTATTTATGGAAACCGACAGTTAAGTTTAATTCAATACAGTCTAATTTAGTTTTCATTGTAAAGTATCAGGCTTTTTTAATTTACTGTTAATTTATAGAAGTGCAAATTCAATGAGTTTGCAAGCCATTATTAGGTTATTATTGTTCTTCAATTCTTCCATTGAAGATTTAGGTAAAAGCAAATTGGTGGCTTGTCTTTCTTTGTAACAATAAGTCCTTTGTAATTGTAACTATGGGAAATTTTGTGTAAATAAACGATGCAGTTTTCATGATGAAGTAGGTTAGGTTATTGAGGGTACTTGGTGTAAATTTGTTATGTTCTTTCTTAAGAGTGATTGTATAGAATTTCTAGTACCCATGATTGGATTTGGGGTGACTACTCCCCCCGTTAACCTTTCCATTTCTCGGAATGTGCATTTTTACG

mRNA sequence

GATCCTTTTTCTCCGAAATTTCTCGGTTCTTCCTCACTAAGTAAATAAAAAATAAAATAAAAAACACGTCTTTATTTAAAAAAGAGAAAATAAACTGAGCATATCTTTTCCTTCCAATATTTTGAAATATAAATATTGTGAGTGTCACCTAAATTTAGCAGTTTAATCCCAGTTTACAAAATTAAGTTGAACTACTCTACTTCAAAATCTTTCACTCTCTACATTTTTATTCACCAGCAAACACAGTAATTTCGGGACTACTATTTAAGCGTATTCAGCGGTTACGAAATCTCTCATTAAATTCCCTCTCCTAAATTTCTGTTTTTGGTATTGAAGCAAGGAAAATGGCGTTGACGAAGAGCTTGAGTTTCTCTCTAGGAAGGAAGAGGATATTAATTTCTAAAAATAGCTGTGATTTGGAGCAATTTTGTGCTGATTTTGAGCCGTATTCACCTGTGAAGAGACACTGTTACAGTAGTGATGAAGATGACGAAACGTTTCGAGTAAAGGATACGAGTTCTCTTCTTGAAGCTCTGCCTCAAGAAATTCTGATCAAAGTAATTTGTGGTGTGGATCACGATGACCTAAAACAGCTTTTCTTAGTTTCTAAAACAGTTCGCGATTCGACGATTATCGCGAAGCAATCGCATTTCGCATTCAGTACACCGGCGAAGATGAAAGCGTTTAGAAATTCAATTGATATGTTGAATAATGAAATGGATTTGGATGAAATTGAAGCTCCGAATGCTCCGAAACAAGCTCGGAAACTGAATCGTCCTCGAATTAACAAAAAAAGACTGAGCGATATTTCCGTCGCTTTGTTCTCCGACGGAGAAGAGGAAGAGCAGAGATGGACTAGAAGAAGTTTATTTATGGAAACCGACAGTTAAGTTTAATTCAATACAGTCTAATTTAGTTTTCATTGTAAAGTATCAGGCTTTTTTAATTTACTGTTAATTTATAGAAGTGCAAATTCAATGAGTTTGCAAGCCATTATTAGGTTATTATTGTTCTTCAATTCTTCCATTGAAGATTTAGGTAAAAGCAAATTGGTGGCTTGTCTTTCTTTGTAACAATAAGTCCTTTGTAATTGTAACTATGGGAAATTTTGTGTAAATAAACGATGCAGTTTTCATGATGAAGTAGGTTAGGTTATTGAGGGTACTTGGTGTAAATTTGTTATGTTCTTTCTTAAGAGTGATTGTATAGAATTTCTAGTACCCATGATTGGATTTGGGGTGACTACTCCCCCCGTTAACCTTTCCATTTCTCGGAATGTGCATTTTTACG

Coding sequence (CDS)

ATGGCGTTGACGAAGAGCTTGAGTTTCTCTCTAGGAAGGAAGAGGATATTAATTTCTAAAAATAGCTGTGATTTGGAGCAATTTTGTGCTGATTTTGAGCCGTATTCACCTGTGAAGAGACACTGTTACAGTAGTGATGAAGATGACGAAACGTTTCGAGTAAAGGATACGAGTTCTCTTCTTGAAGCTCTGCCTCAAGAAATTCTGATCAAAGTAATTTGTGGTGTGGATCACGATGACCTAAAACAGCTTTTCTTAGTTTCTAAAACAGTTCGCGATTCGACGATTATCGCGAAGCAATCGCATTTCGCATTCAGTACACCGGCGAAGATGAAAGCGTTTAGAAATTCAATTGATATGTTGAATAATGAAATGGATTTGGATGAAATTGAAGCTCCGAATGCTCCGAAACAAGCTCGGAAACTGAATCGTCCTCGAATTAACAAAAAAAGACTGAGCGATATTTCCGTCGCTTTGTTCTCCGACGGAGAAGAGGAAGAGCAGAGATGGACTAGAAGAAGTTTATTTATGGAAACCGACAGTTAA

Protein sequence

MALTKSLSFSLGRKRILISKNSCDLEQFCADFEPYSPVKRHCYSSDEDDETFRVKDTSSLLEALPQEILIKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNSIDMLNNEMDLDEIEAPNAPKQARKLNRPRINKKRLSDISVALFSDGEEEEQRWTRRSLFMETDS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo12590.1	Spo12590.1	mRNA

Homology

[Close]

BLAST of Spo12590.1 vs. NCBI nr
Match: gi|902209820|gb|KNA16281.1| (hypothetical protein SOVF_090500 [Spinacia oleracea])

HSP 1 Score: 356.7 bits (914), Expect = 2.400e-95
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1


		  
Query: 1   MALTKSLSFSLGRKRILISKNSCDLEQFCADFEPYSPVKRHCYSSDEDDETFRVKDTSSL 60
           MALTKSLSFSLGRKRILISKNSCDLEQFCADFEPYSPVKRHCYSSDEDDETFRVKDTSSL
Sbjct: 1   MALTKSLSFSLGRKRILISKNSCDLEQFCADFEPYSPVKRHCYSSDEDDETFRVKDTSSL 60

Query: 61  LEALPQEILIKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNSIDM 120
           LEALPQEILIKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNSIDM
Sbjct: 61  LEALPQEILIKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNSIDM 120

Query: 121 LNNEMDLDEIEAPNAPKQARKLNRPRINKKRLSDISVALFSDGEEEEQRWTRRSLFMETD 180
           LNNEMDLDEIEAPNAPKQARKLNRPRINKKRLSDISVALFSDGEEEEQRWTRRSLFMETD
Sbjct: 121 LNNEMDLDEIEAPNAPKQARKLNRPRINKKRLSDISVALFSDGEEEEQRWTRRSLFMETD 180

Query: 181 S 182
           S
Sbjct: 181 S 181

[Close]

BLAST of Spo12590.1 vs. NCBI nr
Match: gi|731350006|ref|XP_010686285.1| (PREDICTED: F-box protein SKIP27 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 266.9 bits (681), Expect = 2.500e-68
Identity = 139/184 (75.54%), Postives = 159/184 (86.41%), Query Frame = 1


		  
Query: 1   MALTKSLSFSLGRKRILISKNSCDLEQFCADFEPYSPVKR-HCYSSDEDDETFRVKDTSS 60
           MALTKSLSFS GRKR+LIS NSCDLEQFCADFE ++P+KR +C   D  DE F V  ++S
Sbjct: 1   MALTKSLSFSRGRKRVLISNNSCDLEQFCADFESFTPMKRRYCSGDDFFDEKFSVNTSAS 60

Query: 61  LLEALPQEILIKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNSID 120
           LLEALPQEILIKVICGV+H+DL QLF VSKTVRD+ IIAK+SHFAFSTP+K KAFRNSID
Sbjct: 61  LLEALPQEILIKVICGVNHEDLNQLFSVSKTVRDAAIIAKKSHFAFSTPSKTKAFRNSID 120

Query: 121 MLNNEMDLDEIEAPNAPKQARKLNRPRINKKRLSDISVALFSD--GEEEEQRWTRRSLFM 180
           +LNN MD+++IEAPNAPKQARKLNRPRI KK+L+ ISVALFSD   +EEEQ+WTRRSLF 
Sbjct: 121 LLNNPMDIEDIEAPNAPKQARKLNRPRICKKKLNHISVALFSDEGEDEEEQKWTRRSLFS 180

Query: 181 ETDS 182
           E DS
Sbjct: 181 EMDS 184

[Close]

BLAST of Spo12590.1 vs. NCBI nr
Match: gi|694309576|ref|XP_009375595.1| (PREDICTED: F-box protein At1g61340-like [Pyrus x bretschneideri])

HSP 1 Score: 159.1 bits (401), Expect = 7.400e-36
Identity = 93/176 (52.84%), Postives = 121/176 (68.75%), Query Frame = 1


		  
Query: 10  SLGRKRILISKNSCDLEQFCADFEPYSPVKRHCYSSDEDDETFRVKDT--SSLLEALPQE 69
           +LGRKRI IS N    E   AD  P +P+K+         E     +T  SS LEALPQE
Sbjct: 38  ALGRKRIGISNNG--EEDSPADLYPKTPLKKQ-----RSGEMIWESETAASSALEALPQE 97

Query: 70  ILIKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNSIDMLNNEMDL 129
           IL+K++CGVDHDDLKQLF VSK +R+ T+IAKQ HFA+STP+K  AFR +ID  ++   L
Sbjct: 98  ILLKIVCGVDHDDLKQLFHVSKAIREVTLIAKQCHFAYSTPSKTPAFRTAIDFSDSNCCL 157

Query: 130 DEIEAPNAPKQARKLNRPRINKKRLSDISVALFS---DGEEEEQRWTRRSLFMETD 181
           D+IEAPNAPKQ R+++R   N K+L+ +SV LF+   + EEEE++ TR+ LFME D
Sbjct: 158 DDIEAPNAPKQWRQMHRKLPNGKKLAGLSVNLFASWDEEEEEEEQGTRKGLFMEED 206

[Close]

BLAST of Spo12590.1 vs. NCBI nr
Match: gi|657959848|ref|XP_008371479.1| (PREDICTED: F-box protein SKIP27-like [Malus domestica])

HSP 1 Score: 158.3 bits (399), Expect = 1.300e-35
Identity = 92/174 (52.87%), Postives = 122/174 (70.11%), Query Frame = 1


		  
Query: 10  SLGRKRILISKNSCDLEQFCADFEPYSPVKRHCYSSDE-DDETFRVKDTSSLLEALPQEI 69
           +LGRKRI IS N  +     AD  P +P+K+        + ET      SS LEALPQEI
Sbjct: 12  ALGRKRIGISNNGEEASP--ADLYPNTPLKKQRSGKMIWESETA----ASSALEALPQEI 71

Query: 70  LIKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNSIDMLNNEMDLD 129
           LIKV+CGVDHDDLK+LF VSK +R++T++AKQ HFA+STP+K  AFR +ID+ ++    D
Sbjct: 72  LIKVVCGVDHDDLKRLFRVSKAIREATLVAKQWHFAYSTPSKTLAFRTAIDLSDSNSSPD 131

Query: 130 EIEAPNAPKQARKLNRPRINKKRLSDISVALFS--DGEEEEQRWTRRSLFMETD 181
           EIEAPNAPKQ R+++R   N+K+L+++SV LF+  D E EE + TR+ LFME D
Sbjct: 132 EIEAPNAPKQWRQMHRKLPNQKKLAELSVNLFASWDDEAEEDQGTRKGLFMEED 179

[Close]

BLAST of Spo12590.1 vs. NCBI nr
Match: gi|657983489|ref|XP_008383822.1| (PREDICTED: F-box protein SKIP27-like [Malus domestica])

HSP 1 Score: 158.3 bits (399), Expect = 1.300e-35
Identity = 92/174 (52.87%), Postives = 122/174 (70.11%), Query Frame = 1


		  
Query: 10  SLGRKRILISKNSCDLEQFCADFEPYSPVKRHCYSSDE-DDETFRVKDTSSLLEALPQEI 69
           +LGRKRI IS N  +     AD  P +P+K+        + ET      SS LEALPQEI
Sbjct: 39  ALGRKRIGISNNGEEASP--ADLYPNTPLKKQRSGKMIWESETA----ASSALEALPQEI 98

Query: 70  LIKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNSIDMLNNEMDLD 129
           LIKV+CGVDHDDLK+LF VSK +R++T++AKQ HFA+STP+K  AFR +ID+ ++    D
Sbjct: 99  LIKVVCGVDHDDLKRLFRVSKAIREATLVAKQWHFAYSTPSKTLAFRTAIDLSDSNSSPD 158

Query: 130 EIEAPNAPKQARKLNRPRINKKRLSDISVALFS--DGEEEEQRWTRRSLFMETD 181
           EIEAPNAPKQ R+++R   N+K+L+++SV LF+  D E EE + TR+ LFME D
Sbjct: 159 EIEAPNAPKQWRQMHRKLPNQKKLAELSVNLFASWDDEAEEDQGTRKGLFMEED 206

[Close]

BLAST of Spo12590.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R9U6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_090500 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 1.700e-95
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1


		  
Query: 1   MALTKSLSFSLGRKRILISKNSCDLEQFCADFEPYSPVKRHCYSSDEDDETFRVKDTSSL 60
           MALTKSLSFSLGRKRILISKNSCDLEQFCADFEPYSPVKRHCYSSDEDDETFRVKDTSSL
Sbjct: 1   MALTKSLSFSLGRKRILISKNSCDLEQFCADFEPYSPVKRHCYSSDEDDETFRVKDTSSL 60

Query: 61  LEALPQEILIKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNSIDM 120
           LEALPQEILIKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNSIDM
Sbjct: 61  LEALPQEILIKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNSIDM 120

Query: 121 LNNEMDLDEIEAPNAPKQARKLNRPRINKKRLSDISVALFSDGEEEEQRWTRRSLFMETD 180
           LNNEMDLDEIEAPNAPKQARKLNRPRINKKRLSDISVALFSDGEEEEQRWTRRSLFMETD
Sbjct: 121 LNNEMDLDEIEAPNAPKQARKLNRPRINKKRLSDISVALFSDGEEEEQRWTRRSLFMETD 180

Query: 181 S 182
           S
Sbjct: 181 S 181

[Close]

BLAST of Spo12590.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BSJ4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g181610 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.800e-68
Identity = 139/184 (75.54%), Postives = 159/184 (86.41%), Query Frame = 1


		  
Query: 1   MALTKSLSFSLGRKRILISKNSCDLEQFCADFEPYSPVKR-HCYSSDEDDETFRVKDTSS 60
           MALTKSLSFS GRKR+LIS NSCDLEQFCADFE ++P+KR +C   D  DE F V  ++S
Sbjct: 1   MALTKSLSFSRGRKRVLISNNSCDLEQFCADFESFTPMKRRYCSGDDFFDEKFSVNTSAS 60

Query: 61  LLEALPQEILIKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNSID 120
           LLEALPQEILIKVICGV+H+DL QLF VSKTVRD+ IIAK+SHFAFSTP+K KAFRNSID
Sbjct: 61  LLEALPQEILIKVICGVNHEDLNQLFSVSKTVRDAAIIAKKSHFAFSTPSKTKAFRNSID 120

Query: 121 MLNNEMDLDEIEAPNAPKQARKLNRPRINKKRLSDISVALFSD--GEEEEQRWTRRSLFM 180
           +LNN MD+++IEAPNAPKQARKLNRPRI KK+L+ ISVALFSD   +EEEQ+WTRRSLF 
Sbjct: 121 LLNNPMDIEDIEAPNAPKQARKLNRPRICKKKLNHISVALFSDEGEDEEEQKWTRRSLFS 180

Query: 181 ETDS 182
           E DS
Sbjct: 181 EMDS 184

[Close]

BLAST of Spo12590.1 vs. UniProtKB/TrEMBL
Match: B9H220_POPTR (F-box family protein OS=Populus trichocarpa GN=POPTR_0004s03440g PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.600e-32
Identity = 87/174 (50.00%), Postives = 115/174 (66.09%), Query Frame = 1


		  
Query: 8   SFSLGRKRILISKNSCDLEQFC-ADFEPYSPVKRHCYSSDEDDETFRVKDTSSLLEALPQ 67
           S+S GRKRIL +KN+ + E     D    SP+KR C    E           S LE+LPQ
Sbjct: 35  SYSFGRKRILSTKNNVNSEDLLNLDSTFKSPLKRLCSLEPE----------KSNLESLPQ 94

Query: 68  EILIKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNSIDMLNNEMD 127
           +ILI+V+C VDHDDLKQLF VSK +R++T+IAK+SHFA+STP K + FR+  D L N  +
Sbjct: 95  DILIRVLCRVDHDDLKQLFHVSKVIREATLIAKESHFAYSTPRKSQGFRSPFD-LENPGE 154

Query: 128 LDEIEAPNAPKQARKLNRPRINKKRLSDISVALFSDGEEEEQRWTRRSLFMETD 181
           LDEIEAPNAPKQ R   + R+N+K ++D+SVALF+          ++ LFMET+
Sbjct: 155 LDEIEAPNAPKQRRSY-KSRLNRKSIADVSVALFAS--------PKKGLFMETE 188

[Close]

BLAST of Spo12590.1 vs. UniProtKB/TrEMBL
Match: A0A0A0KI01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G516960 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.600e-32
Identity = 85/170 (50.00%), Postives = 118/170 (69.41%), Query Frame = 1


		  
Query: 11  LGRKRILISKNSCDLEQFCADFEPYSPVKRHCYSSDEDDETFRVKDTSSLLEALPQEILI 70
           LGRKR++IS   C  E    D  P +P KR C     +  +  V+D  SLLEALPQEILI
Sbjct: 34  LGRKRVVIS---CHEEDSPTDLTPKAPSKRRC-----NVVSTAVEDDRSLLEALPQEILI 93

Query: 71  KVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNSIDMLNNEMDLDEI 130
           +V+CGV+HDDLKQL  VSKT+ ++T+IAK SHFA+STP+K++ FR +I+ L++  D DEI
Sbjct: 94  RVLCGVEHDDLKQLIRVSKTINEATLIAKDSHFAYSTPSKVRRFRTAIE-LDDSSDFDEI 153

Query: 131 EAPNAPKQARKLNRPRINKKRLSDISVALFSDGEEEEQRWTRRSLFMETD 181
           EAPNA    R   R  +N+K+L++IS+ALF+   EEE +W ++ L + T+
Sbjct: 154 EAPNACPTRR--FRTPLNRKKLAEISIALFA---EEEDQWPKKKLPIWTE 189

[Close]

BLAST of Spo12590.1 vs. UniProtKB/TrEMBL
Match: A0A067JMY6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21355 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.500e-30
Identity = 83/172 (48.26%), Postives = 109/172 (63.37%), Query Frame = 1


		  
Query: 10  SLGRKRILISKNSCDLEQFCADFEPYSPVKRHCYSSDEDDETFRVKDTSSLLEALPQEIL 69
           S GRKRILIS +   L     D    +P+KRHC    E           S LE+LPQ+IL
Sbjct: 33  SFGRKRILISNSEDFLP---LDSPIQTPLKRHCNLEPE----------KSALESLPQDIL 92

Query: 70  IKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNSIDMLNNEMDLDE 129
           +K++CGVDHDDLKQLF VS  +R++T++AK+ HFA+STP K  AFR SID   N  + ++
Sbjct: 93  VKILCGVDHDDLKQLFHVSTVIREATLVAKKWHFAYSTPKKTPAFRTSID-FENPSEFED 152

Query: 130 IEAPNAPKQARKLNRPRINKKRLSDISVALFSDGEEEEQRWTRRSLFMETDS 182
           IEAPNAPK  R   + R+N K L+DISVALF+          R+ LF+ET++
Sbjct: 153 IEAPNAPKVPRSY-KSRLNGKNLADISVALFAS--------PRKELFLETET 181

[Close]

BLAST of Spo12590.1 vs. ExPASy Swiss-Prot
Match: SKI27_ARATH (F-box protein SKIP27 OS=Arabidopsis thaliana GN=SKIP27 PE=1 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 4.200e-23
Identity = 71/161 (44.10%), Postives = 96/161 (59.63%), Query Frame = 1


		  
Query: 11  LGRKRILISKNSCDLEQFCADFEPY-----SPVKRHCYSSDEDDETFRVKDTS--SLLEA 70
           LGRKRILIS  SC  E              SP  +          T     +S  S LE 
Sbjct: 69  LGRKRILIS--SCVRESLSRSAVEIPVVSESPPVKSSLKRQRSRITIVSSSSSEKSRLEC 128

Query: 71  LPQEILIKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNSIDM--- 130
           LPQ++LI+VICGVDH+DLK L LVSK++R+++++AK  HFA++TP K +AFRNSID+   
Sbjct: 129 LPQDLLIRVICGVDHEDLKSLKLVSKSIREASLVAKTLHFAYTTPKKTRAFRNSIDLEEV 188

Query: 131 LNNEMDLDEIEAPNAPKQARKLNRPRINKKRLSDISVALFS 162
            ++    D+IE PNAP+  R     R  K++LS +S ALF+
Sbjct: 189 SDSRHQEDDIEPPNAPRHYRWTKAKR--KEQLSSVSAALFT 225

[Close]

BLAST of Spo12590.1 vs. ExPASy Swiss-Prot
Match: FB316_ARATH (F-box protein At1g61340 OS=Arabidopsis thaliana GN=At1g61340 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.600e-22
Identity = 77/156 (49.36%), Postives = 99/156 (63.46%), Query Frame = 1


		  
Query: 12  GRKRILISKNSCDLEQFCADFEPYSPV-KRHCYSSDEDDETFRVKDTSSL-LEALPQEIL 71
           GRKRILIS    ++E    D    SPV K+ C     DD+T  V +  S  LE LP +IL
Sbjct: 40  GRKRILISSGD-EME----DSIFTSPVGKKLC-----DDKTTSVAEGQSRELEDLPLDIL 99

Query: 72  IKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNS----IDMLNNEM 131
           +++ICGV+H+DLKQLF VSKT+R++T+IAKQSHFA+STP K   F +         + E 
Sbjct: 100 VRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYSTPRKTSVFHHGRFGWDKPFDVED 159

Query: 132 DLDEIEAPNAPKQAR-KLNRPRINKKRLSDISVALF 161
           D +EIEAP AP Q R +L+R   NK   S +SVALF
Sbjct: 160 DDEEIEAPGAPLQKRYRLSRINRNKDD-SGVSVALF 184

[Close]

BLAST of Spo12590.1 vs. ExPASy Swiss-Prot
Match: FB220_ARATH (F-box protein At4g05010 OS=Arabidopsis thaliana GN=At4g05010 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.300e-20
Identity = 71/154 (46.10%), Postives = 92/154 (59.74%), Query Frame = 1


		  
Query: 11  LGRKRILISKNSCDLEQFCADFEPYSPVKRHCYSSDEDDETFRVKDTSSLLEALPQEILI 70
           LGRKRILISK + + +          PVKR    S E  E+ R     SLLE L Q+ILI
Sbjct: 30  LGRKRILISKRAPENDS--------PPVKR---PSHETTESCR-----SLLETLHQDILI 89

Query: 71  KVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNSIDML----NNEMD 130
           +V+C VDH+DL  L  VSKT+R + I AK+SHF +STP K   FR++I +L    N+   
Sbjct: 90  RVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAILILDSNSNSSSQ 149

Query: 131 LDEIEAPNAPKQARKLNRPRINKKRLSDISVALF 161
            DE+E PNAP + R +NR    +  LS IS+ LF
Sbjct: 150 DDEMEPPNAPIRRRFINR----ESDLSKISMVLF 163

[Close]

BLAST of Spo12590.1 vs. ExPASy Swiss-Prot
Match: FB248_ARATH (F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.500e-9
Identity = 36/117 (30.77%), Postives = 63/117 (53.85%), Query Frame = 1


		  
Query: 57  TSSLLEALPQEILIKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTP--AKMKAF 116
           + S LE+LP ++L+K++C + HD LK +F VS+ +R +TI+A+Q HF ++TP  ++ +  
Sbjct: 158 SESQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATILARQYHFNYTTPDRSRQEML 217

Query: 117 R-------NSIDMLNNEMDLDEIEAPNAPKQARKLNRP--RINKKRLSDISVALFSD 163
           R       N       + +   + +P+ PK  +   RP  R     +  I+  LF D
Sbjct: 218 RVMTPVPINRWPFRRGDGNPTMVSSPHTPKAPKHAPRPPSRTKLAEMKQITAVLFQD 274

[Close]

BLAST of Spo12590.1 vs. TAIR (Arabidopsis)
Match: AT4G21510.1 (F-box family protein)

HSP 1 Score: 109.4 bits (272), Expect = 2.400e-24
Identity = 71/161 (44.10%), Postives = 96/161 (59.63%), Query Frame = 1


		  
Query: 11  LGRKRILISKNSCDLEQFCADFEPY-----SPVKRHCYSSDEDDETFRVKDTS--SLLEA 70
           LGRKRILIS  SC  E              SP  +          T     +S  S LE 
Sbjct: 69  LGRKRILIS--SCVRESLSRSAVEIPVVSESPPVKSSLKRQRSRITIVSSSSSEKSRLEC 128

Query: 71  LPQEILIKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNSIDM--- 130
           LPQ++LI+VICGVDH+DLK L LVSK++R+++++AK  HFA++TP K +AFRNSID+   
Sbjct: 129 LPQDLLIRVICGVDHEDLKSLKLVSKSIREASLVAKTLHFAYTTPKKTRAFRNSIDLEEV 188

Query: 131 LNNEMDLDEIEAPNAPKQARKLNRPRINKKRLSDISVALFS 162
            ++    D+IE PNAP+  R     R  K++LS +S ALF+
Sbjct: 189 SDSRHQEDDIEPPNAPRHYRWTKAKR--KEQLSSVSAALFT 225

[Close]

BLAST of Spo12590.1 vs. TAIR (Arabidopsis)
Match: AT4G05010.1 (F-box family protein)

HSP 1 Score: 99.8 bits (247), Expect = 1.900e-21
Identity = 71/154 (46.10%), Postives = 92/154 (59.74%), Query Frame = 1


		  
Query: 11  LGRKRILISKNSCDLEQFCADFEPYSPVKRHCYSSDEDDETFRVKDTSSLLEALPQEILI 70
           LGRKRILISK + + +          PVKR    S E  E+ R     SLLE L Q+ILI
Sbjct: 30  LGRKRILISKRAPENDS--------PPVKR---PSHETTESCR-----SLLETLHQDILI 89

Query: 71  KVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNSIDML----NNEMD 130
           +V+C VDH+DL  L  VSKT+R + I AK+SHF +STP K   FR++I +L    N+   
Sbjct: 90  RVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAILILDSNSNSSSQ 149

Query: 131 LDEIEAPNAPKQARKLNRPRINKKRLSDISVALF 161
            DE+E PNAP + R +NR    +  LS IS+ LF
Sbjct: 150 DDEMEPPNAPIRRRFINR----ESDLSKISMVLF 163

[Close]

BLAST of Spo12590.1 vs. TAIR (Arabidopsis)
Match: AT1G61340.2 (F-box family protein)

HSP 1 Score: 89.0 bits (219), Expect = 3.300e-18
Identity = 51/98 (52.04%), Postives = 69/98 (70.41%), Query Frame = 1


		  
Query: 68  ILIKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTPAKMKAFRNS----IDMLNN 127
           +++++ICGV+H+DLKQLF VSKT+R++T+IAKQSHFA+STP K   F +         + 
Sbjct: 134 VIVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYSTPRKTSVFHHGRFGWDKPFDV 193

Query: 128 EMDLDEIEAPNAPKQAR-KLNRPRINKKRLSDISVALF 161
           E D +EIEAP AP Q R +L+R   NK   S +SVALF
Sbjct: 194 EDDDEEIEAPGAPLQKRYRLSRINRNKDD-SGVSVALF 230

[Close]

BLAST of Spo12590.1 vs. TAIR (Arabidopsis)
Match: AT4G35930.1 (F-box family protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.000e-10
Identity = 36/117 (30.77%), Postives = 63/117 (53.85%), Query Frame = 1


		  
Query: 57  TSSLLEALPQEILIKVICGVDHDDLKQLFLVSKTVRDSTIIAKQSHFAFSTP--AKMKAF 116
           + S LE+LP ++L+K++C + HD LK +F VS+ +R +TI+A+Q HF ++TP  ++ +  
Sbjct: 158 SESQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATILARQYHFNYTTPDRSRQEML 217

Query: 117 R-------NSIDMLNNEMDLDEIEAPNAPKQARKLNRP--RINKKRLSDISVALFSD 163
           R       N       + +   + +P+ PK  +   RP  R     +  I+  LF D
Sbjct: 218 RVMTPVPINRWPFRRGDGNPTMVSSPHTPKAPKHAPRPPSRTKLAEMKQITAVLFQD 274

The following BLAST results are available for this feature:

BLAST of Spo12590.1 vs. NCBI nr
BLAST of Spo12590.1 vs. UniProtKB/TrEMBL
BLAST of Spo12590.1 vs. ExPASy Swiss-Prot
BLAST of Spo12590.1 vs. TAIR (Arabidopsis)

BLAST of Spo12590.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902209820\|gb\|KNA16281.1\|	2.4e-95	100.	hypothetical protein SOVF_0905...	[more]
gi\|731350006\|ref\|XP_010686285.1\|	2.5e-68	75.5	PREDICTED: F-box protein SKIP2...	[more]
gi\|694309576\|ref\|XP_009375595.1\|	7.4e-36	52.8	PREDICTED: F-box protein At1g6...	[more]
gi\|657959848\|ref\|XP_008371479.1\|	1.3e-35	52.8	PREDICTED: F-box protein SKIP2...	[more]
gi\|657983489\|ref\|XP_008383822.1\|	1.3e-35	52.8	PREDICTED: F-box protein SKIP2...	[more]

BLAST of Spo12590.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R9U6_SPIOL	1.7e-95	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BSJ4_BETVU	1.8e-68	75.5	Uncharacterized protein OS=Bet...	[more]
B9H220_POPTR	1.6e-32	50.0	F-box family protein OS=Populu...	[more]
A0A0A0KI01_CUCSA	1.6e-32	50.0	Uncharacterized protein OS=Cuc...	[more]
A0A067JMY6_JATCU	2.5e-30	48.2	Uncharacterized protein OS=Jat...	[more]

BLAST of Spo12590.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4


Match Name	E-value	Identity	Description
SKI27_ARATH	4.2e-23	44.1	F-box protein SKIP27 OS=Arabid...	[more]
FB316_ARATH	3.6e-22	49.3	F-box protein At1g61340 OS=Ara...	[more]
FB220_ARATH	3.3e-20	46.1	F-box protein At4g05010 OS=Ara...	[more]
FB248_ARATH	3.5e-9	30.7	F-box protein At4g35930 OS=Ara...	[more]

BLAST of Spo12590.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4


Match Name	E-value	Identity	Description
AT4G21510.1	2.4e-24	44.1	F-box family protein	[more]
AT4G05010.1	1.9e-21	46.1	F-box family protein	[more]
AT1G61340.2	3.3e-18	52.0	F-box family protein	[more]
AT4G35930.1	2.0e-10	30.7	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PROFILE	PS50181	FBOX	coord: 58..106 score: 9
None	No IPR available	PANTHER	PTHR34049	FAMILY NOT NAMED	coord: 6..178 score: 2.8
None	No IPR available	PANTHER	PTHR34049:SF1	F-BOX PROTEIN SKIP27	coord: 6..178 score: 2.8

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo21791	0.66	Barchart \| Table
Spo21960	0.66	Barchart \| Table