Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTATGCAAGTTCAAGCCCTTCTTTCCAACTCTGTTGGTGCCTTCTCTACTGGCAGCTCCAAGGCGTATCCAGTTGGGTTCAATCCTCGTATAGCTAAACGCGTCAATTTCGGAGTGAAGTGTATGGCGGAGGAGAAGGTTGGAGGTGAACCAAAGCTCGACTCCGGTTTACCAAAGCCAAACCCCACTGTATTGTCTTCACCCACCTCGATCCCAACACCTAGACCACAACCAAAGAAGGTCAGCACAAACTTCACAGACTTGTTTGCCTTTAGCGGCCCTGCACCGGAAAGGATCAACGGCCGCCTAGCCATGATCGGGTTCGTGGCCGCAATAGCCGTAGAGCTATCTAACGGCACTGACCTATTTTCTCAAATATCCGGCAGTGGATCACAATGGTTCCTCGGAACAAGCATCCTTTTTTCGGCAGCATCATTGGTGCCATTGCTCCAAGGAAGCCGACCAGAAGCTAAAACTGAAGGGTTAATGAATGCCAACGCCGAGCTATGGAATGGTAGGATTGCTATGTTAGGCCTTGTAGCCTTGGCTTTCACTGAGTTTGTTACCGGTAGTGCGCTTGTTTAA ATGTCTATGCAAGTTCAAGCCCTTCTTTCCAACTCTGTTGGTGCCTTCTCTACTGGCAGCTCCAAGGCGTATCCAGTTGGGTTCAATCCTCGTATAGCTAAACGCGTCAATTTCGGAGTGAAGTGTATGGCGGAGGAGAAGGTTGGAGGTGAACCAAAGCTCGACTCCGGTTTACCAAAGCCAAACCCCACTGTATTGTCTTCACCCACCTCGATCCCAACACCTAGACCACAACCAAAGAAGGTCAGCACAAACTTCACAGACTTGTTTGCCTTTAGCGGCCCTGCACCGGAAAGGATCAACGGCCGCCTAGCCATGATCGGGTTCGTGGCCGCAATAGCCGTAGAGCTATCTAACGGCACTGACCTATTTTCTCAAATATCCGGCAGTGGATCACAATGGTTCCTCGGAACAAGCATCCTTTTTTCGGCAGCATCATTGGTGCCATTGCTCCAAGGAAGCCGACCAGAAGCTAAAACTGAAGGGTTAATGAATGCCAACGCCGAGCTATGGAATGGTAGGATTGCTATGTTAGGCCTTGTAGCCTTGGCTTTCACTGAGTTTGTTACCGGTAGTGCGCTTGTTTAA ATGTCTATGCAAGTTCAAGCCCTTCTTTCCAACTCTGTTGGTGCCTTCTCTACTGGCAGCTCCAAGGCGTATCCAGTTGGGTTCAATCCTCGTATAGCTAAACGCGTCAATTTCGGAGTGAAGTGTATGGCGGAGGAGAAGGTTGGAGGTGAACCAAAGCTCGACTCCGGTTTACCAAAGCCAAACCCCACTGTATTGTCTTCACCCACCTCGATCCCAACACCTAGACCACAACCAAAGAAGGTCAGCACAAACTTCACAGACTTGTTTGCCTTTAGCGGCCCTGCACCGGAAAGGATCAACGGCCGCCTAGCCATGATCGGGTTCGTGGCCGCAATAGCCGTAGAGCTATCTAACGGCACTGACCTATTTTCTCAAATATCCGGCAGTGGATCACAATGGTTCCTCGGAACAAGCATCCTTTTTTCGGCAGCATCATTGGTGCCATTGCTCCAAGGAAGCCGACCAGAAGCTAAAACTGAAGGGTTAATGAATGCCAACGCCGAGCTATGGAATGGTAGGATTGCTATGTTAGGCCTTGTAGCCTTGGCTTTCACTGAGTTTGTTACCGGTAGTGCGCTTGTTTAA MSMQVQALLSNSVGAFSTGSSKAYPVGFNPRIAKRVNFGVKCMAEEKVGGEPKLDSGLPKPNPTVLSSPTSIPTPRPQPKKVSTNFTDLFAFSGPAPERINGRLAMIGFVAAIAVELSNGTDLFSQISGSGSQWFLGTSILFSAASLVPLLQGSRPEAKTEGLMNANAELWNGRIAMLGLVALAFTEFVTGSALV Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12386.1 vs. NCBI nr
Match: gi|902169663|gb|KNA07688.1| (hypothetical protein SOVF_169540 [Spinacia oleracea]) HSP 1 Score: 375.9 bits (964), Expect = 4.200e-101 Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 1
BLAST of Spo12386.1 vs. NCBI nr
Match: gi|902208596|gb|KNA15989.1| (hypothetical protein SOVF_093280 [Spinacia oleracea]) HSP 1 Score: 361.3 bits (926), Expect = 1.100e-96 Identity = 186/195 (95.38%), Postives = 191/195 (97.95%), Query Frame = 1
BLAST of Spo12386.1 vs. NCBI nr
Match: gi|902150947|gb|KNA05469.1| (hypothetical protein SOVF_190050 [Spinacia oleracea]) HSP 1 Score: 333.6 bits (854), Expect = 2.400e-88 Identity = 174/195 (89.23%), Postives = 181/195 (92.82%), Query Frame = 1
BLAST of Spo12386.1 vs. NCBI nr
Match: gi|902164229|gb|KNA06948.1| (hypothetical protein SOVF_176380 [Spinacia oleracea]) HSP 1 Score: 321.2 bits (822), Expect = 1.200e-84 Identity = 170/195 (87.18%), Postives = 180/195 (92.31%), Query Frame = 1
BLAST of Spo12386.1 vs. NCBI nr
Match: gi|902202340|gb|KNA14240.1| (hypothetical protein SOVF_109350 [Spinacia oleracea]) HSP 1 Score: 317.8 bits (813), Expect = 1.300e-83 Identity = 171/195 (87.69%), Postives = 178/195 (91.28%), Query Frame = 1
BLAST of Spo12386.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QLY3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_169540 PE=4 SV=1) HSP 1 Score: 375.9 bits (964), Expect = 2.900e-101 Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 1
BLAST of Spo12386.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAF4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_093280 PE=4 SV=1) HSP 1 Score: 361.3 bits (926), Expect = 7.400e-97 Identity = 186/195 (95.38%), Postives = 191/195 (97.95%), Query Frame = 1
BLAST of Spo12386.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDX3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_190050 PE=4 SV=1) HSP 1 Score: 333.6 bits (854), Expect = 1.600e-88 Identity = 174/195 (89.23%), Postives = 181/195 (92.82%), Query Frame = 1
BLAST of Spo12386.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJR9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_176380 PE=4 SV=1) HSP 1 Score: 321.2 bits (822), Expect = 8.500e-85 Identity = 170/195 (87.18%), Postives = 180/195 (92.31%), Query Frame = 1
BLAST of Spo12386.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R401_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_109350 PE=4 SV=1) HSP 1 Score: 317.8 bits (813), Expect = 9.400e-84 Identity = 171/195 (87.69%), Postives = 178/195 (91.28%), Query Frame = 1
BLAST of Spo12386.1 vs. ExPASy Swiss-Prot
Match: ELIP1_ARATH (Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana GN=ELIP1 PE=1 SV=1) HSP 1 Score: 177.2 bits (448), Expect = 1.800e-43 Identity = 97/195 (49.74%), Postives = 128/195 (65.64%), Query Frame = 1
BLAST of Spo12386.1 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 173.7 bits (439), Expect = 2.000e-42 Identity = 103/197 (52.28%), Postives = 136/197 (69.04%), Query Frame = 1
BLAST of Spo12386.1 vs. ExPASy Swiss-Prot
Match: ELIP2_ARATH (Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana GN=ELIP2 PE=1 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 1.700e-41 Identity = 102/195 (52.31%), Postives = 131/195 (67.18%), Query Frame = 1
BLAST of Spo12386.1 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 5.200e-35 Identity = 86/168 (51.19%), Postives = 108/168 (64.29%), Query Frame = 1
BLAST of Spo12386.1 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 7.000e-32 Identity = 77/133 (57.89%), Postives = 91/133 (68.42%), Query Frame = 1
BLAST of Spo12386.1 vs. TAIR (Arabidopsis)
Match: AT3G22840.1 (Chlorophyll A-B binding family protein) HSP 1 Score: 177.2 bits (448), Expect = 1.000e-44 Identity = 97/195 (49.74%), Postives = 128/195 (65.64%), Query Frame = 1
BLAST of Spo12386.1 vs. TAIR (Arabidopsis)
Match: AT4G14690.1 (Chlorophyll A-B binding family protein) HSP 1 Score: 170.6 bits (431), Expect = 9.400e-43 Identity = 102/195 (52.31%), Postives = 131/195 (67.18%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12386.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo12386.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo12386.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo12386.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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