Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACATGTCATCGCCCTCCAAATATATACAAATCCTCTCTTAATTAATTTTAATTCTTTCCATTCACACTTCAATATTTTTTCCATATAAATATTTCTTATTCTTTACTCTTCACTTTTCTAGCTTCAATCTCTATCTTCCCCCTCCTCTTTCTGCCATCCCTTTCGTTTCGATGTTTAGCGACTGAATTTTCCATAAACCCAAAACAATGATCAAACTTATCTTACTTCCATCCTTTTCCCCAATCATCATCCATCTTTTTATTTTAATCTAATTTTCATTTTTTGATTTAATTTATATAAACGGAGAATTTCCTTTTATGTTTTGGATATTTGTCTGAAAATGGAAGGACATATGCATCATCAACAACAACATCAGTATCATCATCAACAACAGCAGCAACAACAACAACAACATCAAGCGCCGCCGCAGCAGCATCAAATGAGTGGCGGCGCTACGGTGGGGGTAGACACAGGGGATAGATTCCCTCAGTGGAGTATTCAAGAGACAAAAGAGTTTTTAATTATCCGGTCCGATTTAGACCGGAATTTTATGGAGACGAAACGGAACAAGCTTCTGTGGGAAGTTATCTCTACTAAGATGAGAGAGAAAGGATTCAATCGTAGCGCTGAGCAGTGCAAGTGCAAGTGGAAAAATCTCGTCACCCGTTACAAGGTTAGCTAATACTAGCCCCGTTACATATTATTAGGTGTTCCCGGATACACGATAGATATTCCTATTATTCTTCGACCGCGATCACGTACATAATCATGCTCTATGCTACTGTTATCTCTTTTGTCTCTTCATTATTTCCAACTTTGTGTTACAGAAAAGATTTGTTTTACTTGCAAGAAATAACAATAACGCGTTTTTTTTAACCGATTTAGGAAATAGAACATACTCCTCTTTTCCTTAATACGGGTAACAGTTTGACTGGCATAGTTATCAATATACTAGCTTGATCGTAATTATACCACAATTACATGTTATTAAAGCTTTAAAAAATTGATATTTGAAAAATGTACATTAAGAATGATCAACAACATAAGGAGTAGTAAACAATAACATTTGATTTTATATATTAGTAAGAAAATTTGGTCAAAATTAATTAATGTCTGGATAGTACACAATTCAAATCGATGCAAATATTTAGGAACGGATGTAATACTTTTTATTAATTTTTATATAAAAGCTAGTATTAATTTATATGTGGCATGGAAAATTCATAGTATAATACTTATTCAGACTAATGTAATGTGTACATTGATTAAAGTTTGTTTGTTGAGGGAAGTTTAGGGGTGTGAGACAATGGAACCGGAAGTGATGAGACAACAATTCCCATTCTACAACGAGATGCAAGCAATATTCTCAGCAAGGATGCAGAGGATGATGTGGGCCGAGGAAGAAAGCGGGCCGGGTACATCGTCGAAGAAGAGCAAGCAAGGCTTAACCTCTGACGAGGAAGAAGACGAAGACACAGACGGAGAAAAAATCGGTCACGTCAAGAAGAAAGCCAAGAAAGCAAAAACCACAACAACTAGTGTTGCTAATGTTGGCACAATAACAAACAGTAACAATAGTATAAATGCAATGAAGGAAATGTTGGAGGATTTCATGAAACAACAGTTGCAGATGGAGGTGCAATGGAGGGAGGCGTACGAGGCGAGGGAGGAGGAGAGGATGAGGGCGGAGATGGAGTGGAGACAGAGAATGGAGGCGTTAGAGAATGAGAGAGTGTTAATGGAAAGGAGATGGAGAGAGAGAGAAGAGCAGAGGAAAATGAGGGAAGAAGCTAGGGCTGAGAAAAGGGATGCTCTTATTACTACTCTTTTAAACAAGCTTAGAAGAGAAGATTAATTCATTAGCTACCAACAAATCCAACCATGTTCTATTATTCGTCGATCTTCTACATTCTTCTTCTTCTTCTTCTTCATCATCATCAAATGTTGTAGCTTTTTAGCTAGATCATGCACAACCTAAG ACATGTCATCGCCCTCCAAATATATACAAATCCTCTCTTAATTAATTTTAATTCTTTCCATTCACACTTCAATATTTTTTCCATATAAATATTTCTTATTCTTTACTCTTCACTTTTCTAGCTTCAATCTCTATCTTCCCCCTCCTCTTTCTGCCATCCCTTTCGTTTCGATGTTTAGCGACTGAATTTTCCATAAACCCAAAACAATGATCAAACTTATCTTACTTCCATCCTTTTCCCCAATCATCATCCATCTTTTTATTTTAATCTAATTTTCATTTTTTGATTTAATTTATATAAACGGAGAATTTCCTTTTATGTTTTGGATATTTGTCTGAAAATGGAAGGACATATGCATCATCAACAACAACATCAGTATCATCATCAACAACAGCAGCAACAACAACAACAACATCAAGCGCCGCCGCAGCAGCATCAAATGAGTGGCGGCGCTACGGTGGGGGTAGACACAGGGGATAGATTCCCTCAGTGGAGTATTCAAGAGACAAAAGAGTTTTTAATTATCCGGTCCGATTTAGACCGGAATTTTATGGAGACGAAACGGAACAAGCTTCTGTGGGAAGTTATCTCTACTAAGATGAGAGAGAAAGGATTCAATCGTAGCGCTGAGCAGTGCAAGTGCAAGTGGAAAAATCTCGTCACCCGTTACAAGGGGTGTGAGACAATGGAACCGGAAGTGATGAGACAACAATTCCCATTCTACAACGAGATGCAAGCAATATTCTCAGCAAGGATGCAGAGGATGATGTGGGCCGAGGAAGAAAGCGGGCCGGGTACATCGTCGAAGAAGAGCAAGCAAGGCTTAACCTCTGACGAGGAAGAAGACGAAGACACAGACGGAGAAAAAATCGGTCACGTCAAGAAGAAAGCCAAGAAAGCAAAAACCACAACAACTAGTGTTGCTAATGTTGGCACAATAACAAACAGTAACAATAGTATAAATGCAATGAAGGAAATGTTGGAGGATTTCATGAAACAACAGTTGCAGATGGAGGTGCAATGGAGGGAGGCGTACGAGGCGAGGGAGGAGGAGAGGATGAGGGCGGAGATGGAGTGGAGACAGAGAATGGAGGCGTTAGAGAATGAGAGAGTGTTAATGGAAAGGAGATGGAGAGAGAGAGAAGAGCAGAGGAAAATGAGGGAAGAAGCTAGGGCTGAGAAAAGGGATGCTCTTATTACTACTCTTTTAAACAAGCTTAGAAGAGAAGATTAATTCATTAGCTACCAACAAATCCAACCATGTTCTATTATTCGTCGATCTTCTACATTCTTCTTCTTCTTCTTCTTCATCATCATCAAATGTTGTAGCTTTTTAGCTAGATCATGCACAACCTAAG ATGGAAGGACATATGCATCATCAACAACAACATCAGTATCATCATCAACAACAGCAGCAACAACAACAACAACATCAAGCGCCGCCGCAGCAGCATCAAATGAGTGGCGGCGCTACGGTGGGGGTAGACACAGGGGATAGATTCCCTCAGTGGAGTATTCAAGAGACAAAAGAGTTTTTAATTATCCGGTCCGATTTAGACCGGAATTTTATGGAGACGAAACGGAACAAGCTTCTGTGGGAAGTTATCTCTACTAAGATGAGAGAGAAAGGATTCAATCGTAGCGCTGAGCAGTGCAAGTGCAAGTGGAAAAATCTCGTCACCCGTTACAAGGGGTGTGAGACAATGGAACCGGAAGTGATGAGACAACAATTCCCATTCTACAACGAGATGCAAGCAATATTCTCAGCAAGGATGCAGAGGATGATGTGGGCCGAGGAAGAAAGCGGGCCGGGTACATCGTCGAAGAAGAGCAAGCAAGGCTTAACCTCTGACGAGGAAGAAGACGAAGACACAGACGGAGAAAAAATCGGTCACGTCAAGAAGAAAGCCAAGAAAGCAAAAACCACAACAACTAGTGTTGCTAATGTTGGCACAATAACAAACAGTAACAATAGTATAAATGCAATGAAGGAAATGTTGGAGGATTTCATGAAACAACAGTTGCAGATGGAGGTGCAATGGAGGGAGGCGTACGAGGCGAGGGAGGAGGAGAGGATGAGGGCGGAGATGGAGTGGAGACAGAGAATGGAGGCGTTAGAGAATGAGAGAGTGTTAATGGAAAGGAGATGGAGAGAGAGAGAAGAGCAGAGGAAAATGAGGGAAGAAGCTAGGGCTGAGAAAAGGGATGCTCTTATTACTACTCTTTTAAACAAGCTTAGAAGAGAAGATTAA MEGHMHHQQQHQYHHQQQQQQQQQHQAPPQQHQMSGGATVGVDTGDRFPQWSIQETKEFLIIRSDLDRNFMETKRNKLLWEVISTKMREKGFNRSAEQCKCKWKNLVTRYKGCETMEPEVMRQQFPFYNEMQAIFSARMQRMMWAEEESGPGTSSKKSKQGLTSDEEEDEDTDGEKIGHVKKKAKKAKTTTTSVANVGTITNSNNSINAMKEMLEDFMKQQLQMEVQWREAYEAREEERMRAEMEWRQRMEALENERVLMERRWREREEQRKMREEARAEKRDALITTLLNKLRRED Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12369.1 vs. NCBI nr
Match: gi|902212199|gb|KNA16908.1| (hypothetical protein SOVF_084710 [Spinacia oleracea]) HSP 1 Score: 539.3 bits (1388), Expect = 4.300e-150 Identity = 295/300 (98.33%), Postives = 297/300 (99.00%), Query Frame = 1
BLAST of Spo12369.1 vs. NCBI nr
Match: gi|731331616|ref|XP_010676752.1| (PREDICTED: trihelix transcription factor GT-3b-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 398.3 bits (1022), Expect = 1.200e-107 Identity = 233/296 (78.72%), Postives = 257/296 (86.82%), Query Frame = 1
BLAST of Spo12369.1 vs. NCBI nr
Match: gi|1000938800|ref|XP_002533637.2| (PREDICTED: trihelix transcription factor GT-3b [Ricinus communis]) HSP 1 Score: 357.8 bits (917), Expect = 1.800e-95 Identity = 212/298 (71.14%), Postives = 243/298 (81.54%), Query Frame = 1
BLAST of Spo12369.1 vs. NCBI nr
Match: gi|568854892|ref|XP_006481050.1| (PREDICTED: trihelix transcription factor GT-3b [Citrus sinensis]) HSP 1 Score: 349.7 bits (896), Expect = 4.900e-93 Identity = 204/301 (67.77%), Postives = 243/301 (80.73%), Query Frame = 1
BLAST of Spo12369.1 vs. NCBI nr
Match: gi|567873631|ref|XP_006429405.1| (hypothetical protein CICLE_v10012342mg [Citrus clementina]) HSP 1 Score: 348.6 bits (893), Expect = 1.100e-92 Identity = 203/298 (68.12%), Postives = 242/298 (81.21%), Query Frame = 1
BLAST of Spo12369.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBN4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_084710 PE=4 SV=1) HSP 1 Score: 539.3 bits (1388), Expect = 3.000e-150 Identity = 295/300 (98.33%), Postives = 297/300 (99.00%), Query Frame = 1
BLAST of Spo12369.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CFL2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g102770 PE=4 SV=1) HSP 1 Score: 398.3 bits (1022), Expect = 8.300e-108 Identity = 233/296 (78.72%), Postives = 257/296 (86.82%), Query Frame = 1
BLAST of Spo12369.1 vs. UniProtKB/TrEMBL
Match: V4SUJ2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012342mg PE=4 SV=1) HSP 1 Score: 348.6 bits (893), Expect = 7.500e-93 Identity = 203/298 (68.12%), Postives = 242/298 (81.21%), Query Frame = 1
BLAST of Spo12369.1 vs. UniProtKB/TrEMBL
Match: A0A067F0F0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022743mg PE=4 SV=1) HSP 1 Score: 347.4 bits (890), Expect = 1.700e-92 Identity = 203/301 (67.44%), Postives = 242/301 (80.40%), Query Frame = 1
BLAST of Spo12369.1 vs. UniProtKB/TrEMBL
Match: A0A067JY09_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25003 PE=4 SV=1) HSP 1 Score: 345.9 bits (886), Expect = 4.900e-92 Identity = 203/298 (68.12%), Postives = 239/298 (80.20%), Query Frame = 1
BLAST of Spo12369.1 vs. ExPASy Swiss-Prot
Match: TGT3B_ARATH (Trihelix transcription factor GT-3b OS=Arabidopsis thaliana GN=GT-3B PE=1 SV=1) HSP 1 Score: 265.0 bits (676), Expect = 9.900e-70 Identity = 164/295 (55.59%), Postives = 201/295 (68.14%), Query Frame = 1
BLAST of Spo12369.1 vs. ExPASy Swiss-Prot
Match: TGT3A_ARATH (Trihelix transcription factor GT-3a OS=Arabidopsis thaliana GN=GT-3A PE=1 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 1.000e-66 Identity = 158/308 (51.30%), Postives = 208/308 (67.53%), Query Frame = 1
BLAST of Spo12369.1 vs. ExPASy Swiss-Prot
Match: TGT4_ARATH (Trihelix transcription factor GT-4 OS=Arabidopsis thaliana GN=GT-4 PE=2 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 4.700e-11 Identity = 47/153 (30.72%), Postives = 78/153 (50.98%), Query Frame = 1
BLAST of Spo12369.1 vs. ExPASy Swiss-Prot
Match: TGT1_ARATH (Trihelix transcription factor GT-1 OS=Arabidopsis thaliana GN=GT-1 PE=1 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 3.700e-8 Identity = 48/157 (30.57%), Postives = 74/157 (47.13%), Query Frame = 1
BLAST of Spo12369.1 vs. ExPASy Swiss-Prot
Match: ZSC20_HUMAN (Zinc finger and SCAN domain-containing protein 20 OS=Homo sapiens GN=ZSCAN20 PE=2 SV=3) HSP 1 Score: 54.3 bits (129), Expect = 2.600e-6 Identity = 39/126 (30.95%), Postives = 62/126 (49.21%), Query Frame = 1
BLAST of Spo12369.1 vs. TAIR (Arabidopsis)
Match: AT2G38250.1 (Homeodomain-like superfamily protein) HSP 1 Score: 265.0 bits (676), Expect = 5.600e-71 Identity = 164/295 (55.59%), Postives = 201/295 (68.14%), Query Frame = 1
BLAST of Spo12369.1 vs. TAIR (Arabidopsis)
Match: AT5G01380.1 (Homeodomain-like superfamily protein) HSP 1 Score: 255.0 bits (650), Expect = 5.700e-68 Identity = 158/308 (51.30%), Postives = 208/308 (67.53%), Query Frame = 1
BLAST of Spo12369.1 vs. TAIR (Arabidopsis)
Match: AT3G25990.1 (Homeodomain-like superfamily protein) HSP 1 Score: 70.1 bits (170), Expect = 2.600e-12 Identity = 47/153 (30.72%), Postives = 78/153 (50.98%), Query Frame = 1
BLAST of Spo12369.1 vs. TAIR (Arabidopsis)
Match: AT1G13450.1 (Homeodomain-like superfamily protein) HSP 1 Score: 60.5 bits (145), Expect = 2.100e-9 Identity = 48/157 (30.57%), Postives = 74/157 (47.13%), Query Frame = 1
BLAST of Spo12369.1 vs. TAIR (Arabidopsis)
Match: AT5G47660.1 (Homeodomain-like superfamily protein) HSP 1 Score: 48.5 bits (114), Expect = 8.200e-6 Identity = 26/69 (37.68%), Postives = 45/69 (65.22%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12369.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo12369.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo12369.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo12369.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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