Spo12253 (gene)

Overview
NameSpo12253
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionrRNA intron-encoded homing endonuclease
LocationSpoScf_26012 : 191 .. 754 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGCTCGTAGTTGGACCTTGGGGTGGTACGACCGGTCCGCCTTTTGGTGTGCACCGGCCGTCTCGCCTCTTTCGCCGGCGATGCGCTCCTGGCCTTAATTGGCCGGGTCGTGCCTCCGGCACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATTATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAAAAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAATTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACGCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCT

mRNA sequence

AAAAAGCTCGTAGTTGGACCTTGGGGTGGTACGACCGGTCCGCCTTTTGGTGTGCACCGGCCGTCTCGCCTCTTTCGCCGGCGATGCGCTCCTGGCCTTAATTGGCCGGGTCGTGCCTCCGGCACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATTATAGGATTCCGACGAAAAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAATTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACGCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCT

Coding sequence (CDS)

AAAAAGCTCGTAGTTGGACCTTGGGGTGGTACGACCGGTCCGCCTTTTGGTGTGCACCGGCCGTCTCGCCTCTTTCGCCGGCGATGCGCTCCTGGCCTTAATTGGCCGGGTCGTGCCTCCGGCACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATTATAGGATTCCGACGAAAAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAATTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACGCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCT

Protein sequence

KKLVVGPWGGTTGPPFGVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIGFRRKTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGGSMVARLKLKGIDGRAPPGVEPAA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12253.1Spo12253.1mRNA


Homology
BLAST of Spo12253.1 vs. NCBI nr
Match: gi|703137890|ref|XP_010106597.1| (hypothetical protein L484_002552 [Morus notabilis])

HSP 1 Score: 261.9 bits (668), Expect = 6.900e-67
Identity = 130/138 (94.20%), Postives = 131/138 (94.93%), Query Frame = 1

		  

Query: 17  GVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIGFRRKTAKAF 76
           GVHR +R F RRCAPGLNWPGRASG VTLKKLECSKQAYALYTLAWDNIIGFRR TAKAF
Sbjct: 55  GVHRSARPFCRRCAPGLNWPGRASGAVTLKKLECSKQAYALYTLAWDNIIGFRRTTAKAF 114

Query: 77  AKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGGSMVAR 136
           AKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTP APYEKSKFLGSGGSMVAR
Sbjct: 115 AKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKFLGSGGSMVAR 174

Query: 137 LKLKGIDGRAPPGVEPAA 155
           LKLKGIDGRAPPGVEPAA
Sbjct: 175 LKLKGIDGRAPPGVEPAA 192

BLAST of Spo12253.1 vs. NCBI nr
Match: gi|823127874|ref|XP_012440607.1| (PREDICTED: uncharacterized protein LOC105765883 [Gossypium raimondii])

HSP 1 Score: 224.6 bits (571), Expect = 1.200e-55
Identity = 116/151 (76.82%), Postives = 121/151 (80.13%), Query Frame = 1

		  

Query: 1   KKLVVGPWGGTTGPPFGVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTL 60
           KKLVVG  GG+ GPP G HR +R + RRCAPGLNWPGR+S  VTLKKLECSKQAYA    
Sbjct: 41  KKLVVGLRGGSAGPPHGEHRSARPYCRRCAPGLNWPGRSSDAVTLKKLECSKQAYA---- 100

Query: 61  AWDNIIGFRRKTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAP 120
                         +FAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTPPAP
Sbjct: 101 --------------SFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPPAP 160

Query: 121 YEKSKFLGSGGSMVARLKLKGIDGRAPPGVE 152
           YEKSK LGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 161 YEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 173

BLAST of Spo12253.1 vs. NCBI nr
Match: gi|694380941|ref|XP_009366572.1| (PREDICTED: uncharacterized protein LOC103956333 [Pyrus x bretschneideri])

HSP 1 Score: 222.2 bits (565), Expect = 6.100e-55
Identity = 117/142 (82.39%), Postives = 120/142 (84.51%), Query Frame = 1

		  

Query: 17  GVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWD-----NIIGFRRK 76
           GVHR +R F RR APGLNWPGRASG VTLKKLECSKQ +    LA+      N     R 
Sbjct: 228 GVHRSARPFCRRYAPGLNWPGRASGAVTLKKLECSKQDFGPILLAFGIGVMINRDSRGRT 287

Query: 77  TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGG 136
           TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGG
Sbjct: 288 TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGG 347

Query: 137 SMVARLKLKGIDGRAPPGVEPA 154
           SMVARLKLKGIDGRAPPGVEPA
Sbjct: 348 SMVARLKLKGIDGRAPPGVEPA 369

BLAST of Spo12253.1 vs. NCBI nr
Match: gi|922327155|ref|XP_013442970.1| (hypothetical protein MTR_0055s0130 [Medicago truncatula])

HSP 1 Score: 215.7 bits (548), Expect = 5.700e-53
Identity = 115/143 (80.42%), Postives = 118/143 (82.52%), Query Frame = 1

		  

Query: 16  FGVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWD-----NIIGFRR 75
           +GVHR +R F RRCAPGLNWPGRASG VTLKKLECSKQ      LA+      N     R
Sbjct: 485 YGVHRLARPFCRRCAPGLNWPGRASGAVTLKKLECSKQDSDPIVLAFGIGVMINRDSRGR 544

Query: 76  KTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSG 135
            TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTP APYEKSK LGSG
Sbjct: 545 TTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKSLGSG 604

Query: 136 GSMVARLKLKGIDGRAPPGVEPA 154
           GSMVARLKLKGIDGRAPPGVEPA
Sbjct: 605 GSMVARLKLKGIDGRAPPGVEPA 627

BLAST of Spo12253.1 vs. NCBI nr
Match: gi|947068904|gb|KRH17795.1| (hypothetical protein GLYMA_13G016700 [Glycine max])

HSP 1 Score: 213.0 bits (541), Expect = 3.700e-52
Identity = 115/143 (80.42%), Postives = 117/143 (81.82%), Query Frame = 1

		  

Query: 17  GVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWD-----NIIGFRRK 76
           GVHR +R F RRCAP LNWPGRASG VTLKKLECSKQ      LA+      N     R 
Sbjct: 128 GVHRSARPFCRRCAPVLNWPGRASGAVTLKKLECSKQDSDPIVLAFGIGVMINRDSRGRT 187

Query: 77  TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGG 136
           TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTP APYEKSK LGSGG
Sbjct: 188 TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKSLGSGG 247

Query: 137 SMVARLKLKGIDGRAPPGVEPAA 155
           SMVARLKLKGIDGRAPPGVEPAA
Sbjct: 248 SMVARLKLKGIDGRAPPGVEPAA 270

BLAST of Spo12253.1 vs. UniProtKB/TrEMBL
Match: M1DUP9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400044276 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 5.700e-68
Identity = 132/141 (93.62%), Postives = 132/141 (93.62%), Query Frame = 1

		  

Query: 14  PPFGVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIGFRRKTA 73
           P   VHR SR F RRCAPGLNWPGRASG VTLKKLECSKQAYALYTLAWDNIIGFRR TA
Sbjct: 45  PCICVHRSSRPFCRRCAPGLNWPGRASGAVTLKKLECSKQAYALYTLAWDNIIGFRRTTA 104

Query: 74  KAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGGSM 133
           KAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTPPAPYEKSKFLGSGGSM
Sbjct: 105 KAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPPAPYEKSKFLGSGGSM 164

Query: 134 VARLKLKGIDGRAPPGVEPAA 155
           VARLKLKGIDGRAPPGVEPAA
Sbjct: 165 VARLKLKGIDGRAPPGVEPAA 185

BLAST of Spo12253.1 vs. UniProtKB/TrEMBL
Match: W9SJ11_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002552 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.800e-67
Identity = 130/138 (94.20%), Postives = 131/138 (94.93%), Query Frame = 1

		  

Query: 17  GVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIGFRRKTAKAF 76
           GVHR +R F RRCAPGLNWPGRASG VTLKKLECSKQAYALYTLAWDNIIGFRR TAKAF
Sbjct: 55  GVHRSARPFCRRCAPGLNWPGRASGAVTLKKLECSKQAYALYTLAWDNIIGFRRTTAKAF 114

Query: 77  AKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGGSMVAR 136
           AKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTP APYEKSKFLGSGGSMVAR
Sbjct: 115 AKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKFLGSGGSMVAR 174

Query: 137 LKLKGIDGRAPPGVEPAA 155
           LKLKGIDGRAPPGVEPAA
Sbjct: 175 LKLKGIDGRAPPGVEPAA 192

BLAST of Spo12253.1 vs. UniProtKB/TrEMBL
Match: M1DB49_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400035737 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.200e-63
Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 1

		  

Query: 25  FRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIGFRRKTAKAFAKDVFINQ 84
           F RRCAPGLNWPGRASG VTLKKLECSKQAYALYTLAWDNIIGFRR TAKAFAKDVFINQ
Sbjct: 5   FCRRCAPGLNWPGRASGAVTLKKLECSKQAYALYTLAWDNIIGFRRTTAKAFAKDVFINQ 64

Query: 85  ERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGGSMVARLKLKGIDG 144
           ERKLGARRRSDTVLVSTINDADQGSADV FRTPPAPYEKSKFLGSGGS+VARLKLKGIDG
Sbjct: 65  ERKLGARRRSDTVLVSTINDADQGSADVAFRTPPAPYEKSKFLGSGGSIVARLKLKGIDG 124

Query: 145 RAPPGVEPAA 155
           +APPGVE AA
Sbjct: 125 KAPPGVELAA 134

BLAST of Spo12253.1 vs. UniProtKB/TrEMBL
Match: A0A0D2ZQ67_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.100e-58
Identity = 120/142 (84.51%), Postives = 124/142 (87.32%), Query Frame = 1

		  

Query: 17  GVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIGFRRKTA--- 76
           G+HR +  F R+ APGLNWPGRASG VTLKKLECSKQAY LYTLAWDNIIGF    A   
Sbjct: 189 GMHRSACPFCRQYAPGLNWPGRASGAVTLKKLECSKQAYTLYTLAWDNIIGFLSYCAGLQ 248

Query: 77  -KAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGGS 136
            + FAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTP APYEKSKFLGSGGS
Sbjct: 249 DRTFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKFLGSGGS 308

Query: 137 MVARLKLKGIDGRAPPGVEPAA 155
           MVARLKLKGIDGRAPPGVEPAA
Sbjct: 309 MVARLKLKGIDGRAPPGVEPAA 330

BLAST of Spo12253.1 vs. UniProtKB/TrEMBL
Match: A0A072TTW7_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_0055s0130 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.000e-53
Identity = 115/143 (80.42%), Postives = 118/143 (82.52%), Query Frame = 1

		  

Query: 16  FGVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWD-----NIIGFRR 75
           +GVHR +R F RRCAPGLNWPGRASG VTLKKLECSKQ      LA+      N     R
Sbjct: 485 YGVHRLARPFCRRCAPGLNWPGRASGAVTLKKLECSKQDSDPIVLAFGIGVMINRDSRGR 544

Query: 76  KTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSG 135
            TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTP APYEKSK LGSG
Sbjct: 545 TTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKSLGSG 604

Query: 136 GSMVARLKLKGIDGRAPPGVEPA 154
           GSMVARLKLKGIDGRAPPGVEPA
Sbjct: 605 GSMVARLKLKGIDGRAPPGVEPA 627

The following BLAST results are available for this feature:
BLAST of Spo12253.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|703137890|ref|XP_010106597.1|6.9e-6794.2hypothetical protein L484_0025... [more]
gi|823127874|ref|XP_012440607.1|1.2e-5576.8PREDICTED: uncharacterized pro... [more]
gi|694380941|ref|XP_009366572.1|6.1e-5582.3PREDICTED: uncharacterized pro... [more]
gi|922327155|ref|XP_013442970.1|5.7e-5380.4hypothetical protein MTR_0055s... [more]
gi|947068904|gb|KRH17795.1|3.7e-5280.4hypothetical protein GLYMA_13G... [more]
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BLAST of Spo12253.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
M1DUP9_SOLTU5.7e-6893.6Uncharacterized protein OS=Sol... [more]
W9SJ11_9ROSA4.8e-6794.2Uncharacterized protein OS=Mor... [more]
M1DB49_SOLTU3.2e-6394.6Uncharacterized protein OS=Sol... [more]
A0A0D2ZQ67_BRAOL1.1e-5884.5Uncharacterized protein OS=Bra... [more]
A0A072TTW7_MEDTR4.0e-5380.4Uncharacterized protein OS=Med... [more]
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BLAST of Spo12253.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12253.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34410FAMILY NOT NAMEDcoord: 59..154
score: 8.9
NoneNo IPR availablePANTHERPTHR34410:SF2SUBFAMILY NOT NAMEDcoord: 59..154
score: 8.9

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006506 GPI anchor biosynthetic process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0000902 cell morphogenesis
biological_process GO:0016049 cell growth
biological_process GO:0044070 regulation of anion transport
biological_process GO:0080090 regulation of primary metabolic process
biological_process GO:0060255 regulation of macromolecule metabolic process
biological_process GO:0031323 regulation of cellular metabolic process
biological_process GO:0015031 protein transport
biological_process GO:0009657 plastid organization
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0009987 cellular process
biological_process GO:0044085 cellular component biogenesis
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0009058 biosynthetic process
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0006857 oligopeptide transport
biological_process GO:0001510 RNA methylation
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0009735 response to cytokinin
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0006810 transport
biological_process GO:0008152 metabolic process
biological_process GO:0080167 response to karrikin
biological_process GO:0006508 proteolysis
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0007030 Golgi organization
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006096 glycolytic process
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0033587 shikimate biosynthetic process
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0009423 chorismate biosynthetic process
biological_process GO:0006629 lipid metabolic process
biological_process GO:0009407 toxin catabolic process
biological_process GO:0009651 response to salt stress
biological_process GO:0046686 response to cadmium ion
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0009932 cell tip growth
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0006465 signal peptide processing
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0030001 metal ion transport
biological_process GO:0043248 proteasome assembly
biological_process GO:0006499 N-terminal protein myristoylation
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0007033 vacuole organization
biological_process GO:0042545 cell wall modification
biological_process GO:0051788 response to misfolded protein
biological_process GO:0046777 protein autophosphorylation
biological_process GO:0009089 lysine biosynthetic process via diaminopimelate
biological_process GO:0015996 chlorophyll catabolic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0016123 xanthophyll biosynthetic process
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0009765 photosynthesis, light harvesting
biological_process GO:0016120 carotene biosynthetic process
biological_process GO:0006544 glycine metabolic process
biological_process GO:0043631 RNA polyadenylation
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0055085 transmembrane transport
biological_process GO:0008643 carbohydrate transport
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009088 threonine biosynthetic process
biological_process GO:0016310 phosphorylation
biological_process GO:0051301 cell division
biological_process GO:0009790 embryo development
biological_process GO:0006897 endocytosis
biological_process GO:0009853 photorespiration
biological_process GO:0006412 translation
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0005829 cytosol
cellular_component GO:0032991 protein-containing complex
cellular_component GO:0042651 thylakoid membrane
cellular_component GO:0030659 cytoplasmic vesicle membrane
cellular_component GO:0005768 endosome
cellular_component GO:0005741 mitochondrial outer membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0009507 chloroplast
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0005576 extracellular region
cellular_component GO:0005886 plasma membrane
cellular_component GO:0000502 proteasome complex
cellular_component GO:0009524 phragmoplast
cellular_component GO:0033179 proton-transporting V-type ATPase, V0 domain
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0009523 photosystem II
cellular_component GO:0009522 photosystem I
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016020 membrane
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005737 cytoplasm
cellular_component GO:0019773 proteasome core complex, alpha-subunit complex
cellular_component GO:0005839 proteasome core complex
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
cellular_component GO:0005665 DNA-directed RNA polymerase II, core complex
cellular_component GO:0005618 cell wall
cellular_component GO:0005739 mitochondrion
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0009506 plasmodesma
cellular_component GO:0046658 anchored component of plasma membrane
cellular_component GO:0005730 nucleolus
cellular_component GO:0005774 vacuolar membrane
molecular_function GO:0016597 amino acid binding
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0042802 identical protein binding
molecular_function GO:0005351 carbohydrate:proton symporter activity
molecular_function GO:0051287 NAD binding
molecular_function GO:0008081 phosphoric diester hydrolase activity
molecular_function GO:0003856 3-dehydroquinate synthase activity
molecular_function GO:0016758 transferase activity, transferring hexosyl groups
molecular_function GO:0000035 acyl binding
molecular_function GO:0019706 protein-cysteine S-palmitoyltransferase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004072 aspartate kinase activity
molecular_function GO:0035673 oligopeptide transmembrane transporter activity
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0004683 calmodulin-dependent protein kinase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0000062 fatty-acyl-CoA binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0008233 peptidase activity
molecular_function GO:0004298 threonine-type endopeptidase activity
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0020037 heme binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0070330 aromatase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0008236 serine-type peptidase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0004652 polynucleotide adenylyltransferase activity
molecular_function GO:0008308 voltage-gated anion channel activity
molecular_function GO:0045435 lycopene epsilon cyclase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function GO:0016168 chlorophyll binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo146871.00Barchart | Table
Spo009361.00Barchart | Table
Spo050290.99Barchart | Table
Spo008980.99Barchart | Table
Spo246250.99Barchart | Table
Spo036180.97Barchart | Table
Spo192060.95Barchart | Table
Spo141940.95Barchart | Table
Spo134590.82Barchart | Table
Spo144410.81Barchart | Table
Spo122020.80Barchart | Table
Spo271020.76Barchart | Table
Spo019140.75Barchart | Table
Spo121280.75Barchart | Table
Spo121760.74Barchart | Table
Spo049230.74Barchart | Table
Spo019290.74Barchart | Table
Spo129420.74Barchart | Table
Spo148490.74Barchart | Table
Spo117330.73Barchart | Table
Spo140080.72Barchart | Table
Spo216910.72Barchart | Table
Spo020850.72Barchart | Table
Spo001750.72Barchart | Table
Spo248570.72Barchart | Table
Spo036080.72Barchart | Table
Spo060300.71Barchart | Table
Spo096740.71Barchart | Table
Spo069620.71Barchart | Table
Spo156030.71Barchart | Table
Spo027310.71Barchart | Table
Spo168210.71Barchart | Table
Spo200710.71Barchart | Table
Spo057310.71Barchart | Table
Spo052280.70Barchart | Table
Spo062940.70Barchart | Table
Spo066810.70Barchart | Table
Spo068050.70Barchart | Table
Spo085400.70Barchart | Table
Spo098030.70Barchart | Table
Spo167860.70Barchart | Table
Spo185020.70Barchart | Table
Spo185750.70Barchart | Table
Spo206770.70Barchart | Table
Spo059900.69Barchart | Table
Spo181850.69Barchart | Table
Spo012040.69Barchart | Table
Spo126630.69Barchart | Table
Spo130310.69Barchart | Table
Spo169450.68Barchart | Table
Spo172680.68Barchart | Table
Spo154200.68Barchart | Table
Spo173720.68Barchart | Table
Spo055310.68Barchart | Table
Spo130290.68Barchart | Table
Spo247120.68Barchart | Table
Spo231480.68Barchart | Table
Spo227600.68Barchart | Table
Spo105290.68Barchart | Table
Spo209570.68Barchart | Table
Spo144380.68Barchart | Table
Spo105370.68Barchart | Table
Spo021070.68Barchart | Table
Spo033060.68Barchart | Table
Spo160700.68Barchart | Table
Spo184510.68Barchart | Table
Spo089690.68Barchart | Table
Spo273470.67Barchart | Table
Spo110980.67Barchart | Table
Spo061990.67Barchart | Table
Spo122010.67Barchart | Table
Spo052250.67Barchart | Table
Spo155170.67Barchart | Table
Spo032510.67Barchart | Table
Spo025940.67Barchart | Table
Spo173710.67Barchart | Table
Spo258560.67Barchart | Table
Spo006150.67Barchart | Table
Spo198740.67Barchart | Table
Spo012610.67Barchart | Table
Spo239080.67Barchart | Table
Spo237170.66Barchart | Table
Spo113460.66Barchart | Table
Spo012310.66Barchart | Table
Spo176790.66Barchart | Table
Spo177240.66Barchart | Table
Spo033810.66Barchart | Table
Spo195580.66Barchart | Table
Spo152360.66Barchart | Table
Spo042540.66Barchart | Table
Spo102220.66Barchart | Table
Spo135790.66Barchart | Table
Spo055350.66Barchart | Table
Spo236100.66Barchart | Table
Spo236640.66Barchart | Table
Spo055140.65Barchart | Table
Spo090150.65Barchart | Table
Spo066760.65Barchart | Table
Spo016950.65Barchart | Table
Spo041460.65Barchart | Table
Spo184590.65Barchart | Table
Spo181030.65Barchart | Table
Spo156390.65Barchart | Table