Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCGGTCCAAACATAATCGGTTCGGTCTTCGGGTCTTAAATTATCAAAATTTCGCTATTCGGTCCGGTCTGGGTTGGTCCGGTCCGGTTCGAGTTTGTACCGATGAATACCCCTAATTGCAACCACTCAATATAATAATGGAAGACATATTTCATTTTTTTTATATTTAAATTTACATTATAAAAGGAACTCATCCTAGTTATTTTCCACATATAGTTGCAGATATGGAGTGCAACAGTATGAGAATCTTGTTCATATTTCTGCTCTCAGTTACTCCCTTGGTAATATTTTCTTCTTTATTTTGATCACTCCAACTTTCTTGCCTTTAGTATATTACAAGATATTCAATTTCATTTATTCTCAAAGCTTCTTTAATTTACACCTTTAAATACAAGTGGGTGGAAAAAAAAGCAGAGGGAGTATCATTCTCTATTATATATCTATTTCATGATAATAACTTTAAATAAAATTGAATTTTTTACAAACATTGTATGTTTATATTAATATTAGAACATTAATCTGTTAATTGGACCTAACTGAATTTAATTAGTTGAATCCGATTGAATTTAGTATTAAAGCCTATCTTAACCTATTAAACTGATCTGACACTGATACTCCTTACATTCCTAAATACTTGACTGATCACGTTTTTCAACGCATAAATTTCACCATATAGTAATTAATTTGCACATAATTTGTCTCCAACTTAACTTATAGTAGTAATTAATTTAATTTGTTTTTGGCAGATTAGTTGTGCTGCAATTGGAGAAGAAGTTGCAAGTAATGAAAATGATCATGTTCCTGTTAATCATCATCATGATCATGGTCATTCAACACCTCACATCGACCATTCTGTACAAGCATTCTTCACCCCTGAAGACCTTAAAGAAGGAAATGTAATACCAACTATGTTTCGAGGTCGATACCCGTCTTCGAGTTCTCCTCGTTTACTTCCTAGGGAAGAAGCTGATTCAATACCTTTCTTACACTCTAAACTCCCTTATCTTCTTCACCTCTTCGGCTTCGCTCAAGCTTCGGCTCGAGCGAATGCCGTTGAAGAAACCCTAAGACAATGCCTAATCGACAAACCGATCCAAGGAGAAACTAAGACCTGTGCTACCTCCTTAGAGTCTATGCTCGATTTTGTGCAACAAATCTTTGGTTCATCAACCAAATTTAAGGCCTTGAGTACTAAAACTTTCGCAAAATCTGGTACTCCCTCTGTTCCTTGATACTTCTCCTGTTTTTCTAATCGGTCGTTCTCCAATAAGTTTTTGTTTCTATTTTTTGACATACATTTTTTTTACTTTTTCATAAATATGATTGTTTTTCTTATACAAATTGTTTTTACCCAAACCATCACCACATCCAATTTTATTTTATTTTAAACTTTTACATTAAACAATTACTCCCTTCGTTTCTTTTTTGTTCTTTACGTTTTTCTTTTTGGGTGTTTCAAAATGCTTTTAAAATTTCATTTTATATTATCACATAAATATTTTAATATTCTGTCAAAATTTGTGTCAAATGATTATTTTAACCAATTAAATTGATTGATCTCACACTTTTCTATTGAGACATTAATTTTTTTTCTCATTTTCTCAATATTAAAATTTTGATAAGAATGAAAACATTATAAATAAACGTAATTTTCCTTGTTTAAATAAAAATAAATAAAAGAATTTCAATGCACATTAATTAGTCGTTAATAAACGTGTAAAAAGACAAACGTACAGAACAAAAAGAAACGGATAGAGTATTTACTTTATCTCATTCTCCATAAAAGTGCATAACAATGATTGTTTTTCTTACACAGACATGCATTTTCTTAACACCCGTGTTTTTCCCCAAACAGGAACAGGGAGTAATATTATACAAAACTATACCATAACGAAGGAACCTAGACAAGTACCATCTCCGAAAATGGTTGCTTGTCATACATTGCCGTACCCATATGTAGTGTACTATTGTCATCACCAAGAAAGCGAAAGTAAGGTGTTTAAAGTTTCATTAAGGGGTGAAGTAAATAACAATATTGTGGAAGCTATTTCTGTATGTCATCTGGATACCTCTCAATGGAGTCCGAATCATCCGTCGTTTCAAGTTTTGGGACTCAAACCTGGTTCATCTCCAATTTGTCATTTCTTTCCTGCTGATAATCTTGTTTGGGTGCCATTATTTGATACTCAAGACTTAGGTTATAAGGTTTTAAGTACTTAAATATATGCTTTTCTACTAATCACTGTTTGGAATTCATAATAAGTACTAAGTAAGTGATTAGTTATTTGGAATATATTATTGCTACTATGAAGTTGTGAAGTTAAAATAAAGTTATGTAAATGTTGTCTCTCTAAGTGTATACTCCCTTTGTCCCTTAATACTCGACCTGTTTCGACCGGACACGCTTGCTAATGCACAACTTTTACCACCAATTTCTTTAACTACATATTATAAAAAGCTATAAAAATATTAATATTTTGAA TTCGGTCCAAACATAATCGGTTCGGTCTTCGGGTCTTAAATTATCAAAATTTCGCTATTCGGTCCGGTCTGGGTTGGTCCGGTCCGGTTCGAGTTTGTACCGATGAATACCCCTAATTGCAACCACTCAATATAATAATGGAAGACATATTTCATTTTTTTTATATTTAAATTTACATTATAAAAGGAACTCATCCTAGTTATTTTCCACATATAGTTGCAGATATGGAGTGCAACAGTATGAGAATCTTGTTCATATTTCTGCTCTCAGTTACTCCCTTGATTAGTTGTGCTGCAATTGGAGAAGAAGTTGCAAGTAATGAAAATGATCATGTTCCTGTTAATCATCATCATGATCATGGTCATTCAACACCTCACATCGACCATTCTGTACAAGCATTCTTCACCCCTGAAGACCTTAAAGAAGGAAATGTAATACCAACTATGTTTCGAGGTCGATACCCGTCTTCGAGTTCTCCTCGTTTACTTCCTAGGGAAGAAGCTGATTCAATACCTTTCTTACACTCTAAACTCCCTTATCTTCTTCACCTCTTCGGCTTCGCTCAAGCTTCGGCTCGAGCGAATGCCGTTGAAGAAACCCTAAGACAATGCCTAATCGACAAACCGATCCAAGGAGAAACTAAGACCTGTGCTACCTCCTTAGAGTCTATGCTCGATTTTGTGCAACAAATCTTTGGTTCATCAACCAAATTTAAGGCCTTGAGTACTAAAACTTTCGCAAAATCTGGAACAGGGAGTAATATTATACAAAACTATACCATAACGAAGGAACCTAGACAAGTACCATCTCCGAAAATGGTTGCTTGTCATACATTGCCGTACCCATATGTAGTGTACTATTGTCATCACCAAGAAAGCGAAAGTAAGGTGTTTAAAGTTTCATTAAGGGGTGAAGTAAATAACAATATTGTGGAAGCTATTTCTGTATGTCATCTGGATACCTCTCAATGGAGTCCGAATCATCCGTCGTTTCAAGTTTTGGGACTCAAACCTGGTTCATCTCCAATTTGTCATTTCTTTCCTGCTGATAATCTTGTTTGGGTGCCATTATTTGATACTCAAGACTTAGGTTATAAGGTTTTAAGTACTTAAATATATGCTTTTCTACTAATCACTGTTTGGAATTCATAATAAGTACTAAGTAAGTGATTAGTTATTTGGAATATATTATTGCTACTATGAAGTTGTGAAGTTAAAATAAAGTTATGTAAATGTTGTCTCTCTAAGTGTATACTCCCTTTGTCCCTTAATACTCGACCTGTTTCGACCGGACACGCTTGCTAATGCACAACTTTTACCACCAATTTCTTTAACTACATATTATAAAAAGCTATAAAAATATTAATATTTTGAA ATGGAGTGCAACAGTATGAGAATCTTGTTCATATTTCTGCTCTCAGTTACTCCCTTGATTAGTTGTGCTGCAATTGGAGAAGAAGTTGCAAGTAATGAAAATGATCATGTTCCTGTTAATCATCATCATGATCATGGTCATTCAACACCTCACATCGACCATTCTGTACAAGCATTCTTCACCCCTGAAGACCTTAAAGAAGGAAATGTAATACCAACTATGTTTCGAGGTCGATACCCGTCTTCGAGTTCTCCTCGTTTACTTCCTAGGGAAGAAGCTGATTCAATACCTTTCTTACACTCTAAACTCCCTTATCTTCTTCACCTCTTCGGCTTCGCTCAAGCTTCGGCTCGAGCGAATGCCGTTGAAGAAACCCTAAGACAATGCCTAATCGACAAACCGATCCAAGGAGAAACTAAGACCTGTGCTACCTCCTTAGAGTCTATGCTCGATTTTGTGCAACAAATCTTTGGTTCATCAACCAAATTTAAGGCCTTGAGTACTAAAACTTTCGCAAAATCTGGAACAGGGAGTAATATTATACAAAACTATACCATAACGAAGGAACCTAGACAAGTACCATCTCCGAAAATGGTTGCTTGTCATACATTGCCGTACCCATATGTAGTGTACTATTGTCATCACCAAGAAAGCGAAAGTAAGGTGTTTAAAGTTTCATTAAGGGGTGAAGTAAATAACAATATTGTGGAAGCTATTTCTGTATGTCATCTGGATACCTCTCAATGGAGTCCGAATCATCCGTCGTTTCAAGTTTTGGGACTCAAACCTGGTTCATCTCCAATTTGTCATTTCTTTCCTGCTGATAATCTTGTTTGGGTGCCATTATTTGATACTCAAGACTTAGGTTATAAGGTTTTAAGTACTTAA MECNSMRILFIFLLSVTPLISCAAIGEEVASNENDHVPVNHHHDHGHSTPHIDHSVQAFFTPEDLKEGNVIPTMFRGRYPSSSSPRLLPREEADSIPFLHSKLPYLLHLFGFAQASARANAVEETLRQCLIDKPIQGETKTCATSLESMLDFVQQIFGSSTKFKALSTKTFAKSGTGSNIIQNYTITKEPRQVPSPKMVACHTLPYPYVVYYCHHQESESKVFKVSLRGEVNNNIVEAISVCHLDTSQWSPNHPSFQVLGLKPGSSPICHFFPADNLVWVPLFDTQDLGYKVLST Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12240.1 vs. NCBI nr
Match: gi|902192557|gb|KNA12070.1| (hypothetical protein SOVF_129260 [Spinacia oleracea]) HSP 1 Score: 605.9 bits (1561), Expect = 3.700e-170 Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 1
BLAST of Spo12240.1 vs. NCBI nr
Match: gi|731358743|ref|XP_010690912.1| (PREDICTED: BURP domain-containing protein 3-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 355.5 bits (911), Expect = 8.800e-95 Identity = 178/283 (62.90%), Postives = 217/283 (76.68%), Query Frame = 1
BLAST of Spo12240.1 vs. NCBI nr
Match: gi|870848180|gb|KMT00469.1| (hypothetical protein BVRB_9g217700 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 354.8 bits (909), Expect = 1.500e-94 Identity = 175/271 (64.58%), Postives = 212/271 (78.23%), Query Frame = 1
BLAST of Spo12240.1 vs. NCBI nr
Match: gi|147798373|emb|CAN74522.1| (hypothetical protein VITISV_034298 [Vitis vinifera]) HSP 1 Score: 290.8 bits (743), Expect = 2.700e-75 Identity = 146/259 (56.37%), Postives = 185/259 (71.43%), Query Frame = 1
BLAST of Spo12240.1 vs. NCBI nr
Match: gi|359475292|ref|XP_003631639.1| (PREDICTED: BURP domain-containing protein 3-like [Vitis vinifera]) HSP 1 Score: 290.0 bits (741), Expect = 4.500e-75 Identity = 146/259 (56.37%), Postives = 186/259 (71.81%), Query Frame = 1
BLAST of Spo12240.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXU1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_129260 PE=4 SV=1) HSP 1 Score: 605.9 bits (1561), Expect = 2.600e-170 Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 1
BLAST of Spo12240.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BK70_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g217700 PE=4 SV=1) HSP 1 Score: 354.8 bits (909), Expect = 1.000e-94 Identity = 175/271 (64.58%), Postives = 212/271 (78.23%), Query Frame = 1
BLAST of Spo12240.1 vs. UniProtKB/TrEMBL
Match: A5BGD6_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_034298 PE=4 SV=1) HSP 1 Score: 290.8 bits (743), Expect = 1.900e-75 Identity = 146/259 (56.37%), Postives = 185/259 (71.43%), Query Frame = 1
BLAST of Spo12240.1 vs. UniProtKB/TrEMBL
Match: F6HQL0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g02340 PE=4 SV=1) HSP 1 Score: 290.0 bits (741), Expect = 3.200e-75 Identity = 146/259 (56.37%), Postives = 186/259 (71.81%), Query Frame = 1
BLAST of Spo12240.1 vs. UniProtKB/TrEMBL
Match: M5VXL7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009236mg PE=4 SV=1) HSP 1 Score: 280.0 bits (715), Expect = 3.300e-72 Identity = 144/255 (56.47%), Postives = 177/255 (69.41%), Query Frame = 1
BLAST of Spo12240.1 vs. ExPASy Swiss-Prot
Match: BNM2C_BRANA (BURP domain-containing protein BNM2C OS=Brassica napus GN=BNM2C PE=2 SV=1) HSP 1 Score: 195.3 bits (495), Expect = 9.500e-49 Identity = 107/273 (39.19%), Postives = 163/273 (59.71%), Query Frame = 1
BLAST of Spo12240.1 vs. ExPASy Swiss-Prot
Match: BNM2A_BRANA (BURP domain-containing protein BNM2A OS=Brassica napus GN=BNM2A PE=2 SV=1) HSP 1 Score: 191.4 bits (485), Expect = 1.400e-47 Identity = 105/274 (38.32%), Postives = 162/274 (59.12%), Query Frame = 1
BLAST of Spo12240.1 vs. ExPASy Swiss-Prot
Match: USPL1_ARATH (BURP domain protein USPL1 OS=Arabidopsis thaliana GN=USPL1 PE=2 SV=1) HSP 1 Score: 186.0 bits (471), Expect = 5.800e-46 Identity = 95/229 (41.48%), Postives = 137/229 (59.83%), Query Frame = 1
BLAST of Spo12240.1 vs. ExPASy Swiss-Prot
Match: BURPH_ORYSJ (BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=BURP17 PE=2 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 6.600e-42 Identity = 92/234 (39.32%), Postives = 139/234 (59.40%), Query Frame = 1
BLAST of Spo12240.1 vs. ExPASy Swiss-Prot
Match: BURP3_ORYSJ (BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 8.900e-39 Identity = 93/232 (40.09%), Postives = 129/232 (55.60%), Query Frame = 1
BLAST of Spo12240.1 vs. TAIR (Arabidopsis)
Match: AT1G49320.1 (unknown seed protein like 1) HSP 1 Score: 186.0 bits (471), Expect = 3.300e-47 Identity = 95/229 (41.48%), Postives = 137/229 (59.83%), Query Frame = 1
BLAST of Spo12240.1 vs. TAIR (Arabidopsis)
Match: AT5G25610.1 (BURP domain-containing protein) HSP 1 Score: 143.7 bits (361), Expect = 1.900e-34 Identity = 83/230 (36.09%), Postives = 121/230 (52.61%), Query Frame = 1
BLAST of Spo12240.1 vs. TAIR (Arabidopsis)
Match: AT1G70370.1 (polygalacturonase 2) HSP 1 Score: 113.6 bits (283), Expect = 2.100e-25 Identity = 71/224 (31.70%), Postives = 105/224 (46.88%), Query Frame = 1
BLAST of Spo12240.1 vs. TAIR (Arabidopsis)
Match: AT1G23760.1 (BURP domain-containing protein) HSP 1 Score: 104.4 bits (259), Expect = 1.200e-22 Identity = 67/229 (29.26%), Postives = 103/229 (44.98%), Query Frame = 1
BLAST of Spo12240.1 vs. TAIR (Arabidopsis)
Match: AT1G60390.1 (polygalacturonase 1) HSP 1 Score: 102.4 bits (254), Expect = 4.700e-22 Identity = 64/227 (28.19%), Postives = 105/227 (46.26%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12240.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo12240.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo12240.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo12240.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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