Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATAAATGCAGATTCTTGGTTGATAATACACCAATTAGGGTATTCAAGAACCATGAAGCTAGAGGGGTGGGGTTCCCAAAGACCCAACCCATGAGGATATACTCGAGCTTGTGGAATGCGGACCAATGGGCTACTCAAGGAGGTCGAGTTAAGACGGATTGGGCTAAGGCTCCGTTCACGGCTTACTACCGGAACTTTAACGTAAACCCTAACCACGCGGCTGCAACGGCGGCGTTCACCGATTCAAAGTGGCAAAACCAAGAGTTGAATGCATGGAGTAGAAGGAGACTAAGATGGGTTCAAAAGTATTTCATGATCTATAATTATTGTGCTGATGCACAAAGGTTTCCTCGTGGTGTTCCTGTTGAATGCAAGATGATGTGA ATGAATAAATGCAGATTCTTGGTTGATAATACACCAATTAGGGTATTCAAGAACCATGAAGCTAGAGGGGTGGGGTTCCCAAAGACCCAACCCATGAGGATATACTCGAGCTTGTGGAATGCGGACCAATGGGCTACTCAAGGAGGTCGAGTTAAGACGGATTGGGCTAAGGCTCCGTTCACGGCTTACTACCGGAACTTTAACGTAAACCCTAACCACGCGGCTGCAACGGCGGCGTTCACCGATTCAAAGTGGCAAAACCAAGAGTTGAATGCATGGAGTAGAAGGAGACTAAGATGGGTTCAAAAGTATTTCATGATCTATAATTATTGTGCTGATGCACAAAGGTTTCCTCGTGGTGTTCCTGTTGAATGCAAGATGATGTGA ATGAATAAATGCAGATTCTTGGTTGATAATACACCAATTAGGGTATTCAAGAACCATGAAGCTAGAGGGGTGGGGTTCCCAAAGACCCAACCCATGAGGATATACTCGAGCTTGTGGAATGCGGACCAATGGGCTACTCAAGGAGGTCGAGTTAAGACGGATTGGGCTAAGGCTCCGTTCACGGCTTACTACCGGAACTTTAACGTAAACCCTAACCACGCGGCTGCAACGGCGGCGTTCACCGATTCAAAGTGGCAAAACCAAGAGTTGAATGCATGGAGTAGAAGGAGACTAAGATGGGTTCAAAAGTATTTCATGATCTATAATTATTGTGCTGATGCACAAAGGTTTCCTCGTGGTGTTCCTGTTGAATGCAAGATGATGTGA MNKCRFLVDNTPIRVFKNHEARGVGFPKTQPMRIYSSLWNADQWATQGGRVKTDWAKAPFTAYYRNFNVNPNHAAATAAFTDSKWQNQELNAWSRRRLRWVQKYFMIYNYCADAQRFPRGVPVECKMM Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12226.1 vs. NCBI nr
Match: gi|902166498|gb|KNA07231.1| (hypothetical protein SOVF_173740 [Spinacia oleracea]) HSP 1 Score: 270.4 bits (690), Expect = 1.600e-69 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1
BLAST of Spo12226.1 vs. NCBI nr
Match: gi|731325156|ref|XP_010673363.1| (PREDICTED: brassinosteroid-regulated protein BRU1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 245.0 bits (624), Expect = 7.300e-62 Identity = 110/122 (90.16%), Postives = 113/122 (92.62%), Query Frame = 1
BLAST of Spo12226.1 vs. NCBI nr
Match: gi|802639567|ref|XP_012078442.1| (PREDICTED: xyloglucan endotransglucosylase/hydrolase 2 [Jatropha curcas]) HSP 1 Score: 194.9 bits (494), Expect = 8.600e-47 Identity = 89/121 (73.55%), Postives = 104/121 (85.95%), Query Frame = 1
BLAST of Spo12226.1 vs. NCBI nr
Match: gi|350996666|gb|AEQ37175.1| (xyloglucan endotransglucosylase/hydrolase [Diospyros kaki]) HSP 1 Score: 194.5 bits (493), Expect = 1.100e-46 Identity = 88/121 (72.73%), Postives = 97/121 (80.17%), Query Frame = 1
BLAST of Spo12226.1 vs. NCBI nr
Match: gi|187372968|gb|ACD03218.1| (xyloglucan endotransglucosylase/hydrolase 8 [Actinidia deliciosa]) HSP 1 Score: 193.4 bits (490), Expect = 2.500e-46 Identity = 89/126 (70.63%), Postives = 103/126 (81.75%), Query Frame = 1
BLAST of Spo12226.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QKY1_SPIOL (Xyloglucan endotransglucosylase/hydrolase OS=Spinacia oleracea GN=SOVF_173740 PE=3 SV=1) HSP 1 Score: 270.4 bits (690), Expect = 1.100e-69 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1
BLAST of Spo12226.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CRX9_BETVU (Xyloglucan endotransglucosylase/hydrolase OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g065250 PE=3 SV=1) HSP 1 Score: 245.0 bits (624), Expect = 5.100e-62 Identity = 110/122 (90.16%), Postives = 113/122 (92.62%), Query Frame = 1
BLAST of Spo12226.1 vs. UniProtKB/TrEMBL
Match: A0A067KJZ2_JATCU (Xyloglucan endotransglucosylase/hydrolase OS=Jatropha curcas GN=JCGZ_13130 PE=3 SV=1) HSP 1 Score: 194.9 bits (494), Expect = 6.000e-47 Identity = 89/121 (73.55%), Postives = 104/121 (85.95%), Query Frame = 1
BLAST of Spo12226.1 vs. UniProtKB/TrEMBL
Match: G5DAC6_DIOKA (Xyloglucan endotransglucosylase/hydrolase OS=Diospyros kaki GN=XTH1 PE=2 SV=1) HSP 1 Score: 194.5 bits (493), Expect = 7.800e-47 Identity = 88/121 (72.73%), Postives = 97/121 (80.17%), Query Frame = 1
BLAST of Spo12226.1 vs. UniProtKB/TrEMBL
Match: C0IRG7_ACTDE (Xyloglucan endotransglucosylase/hydrolase OS=Actinidia deliciosa PE=2 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 1.700e-46 Identity = 89/126 (70.63%), Postives = 103/126 (81.75%), Query Frame = 1
BLAST of Spo12226.1 vs. ExPASy Swiss-Prot
Match: XTH2_SOYBN (Xyloglucan endotransglucosylase/hydrolase 2 OS=Glycine max PE=2 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 4.300e-46 Identity = 83/121 (68.60%), Postives = 100/121 (82.64%), Query Frame = 1
BLAST of Spo12226.1 vs. ExPASy Swiss-Prot
Match: XTH15_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 6.800e-44 Identity = 87/128 (67.97%), Postives = 97/128 (75.78%), Query Frame = 1
BLAST of Spo12226.1 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2) HSP 1 Score: 173.7 bits (439), Expect = 1.300e-42 Identity = 80/131 (61.07%), Postives = 97/131 (74.05%), Query Frame = 1
BLAST of Spo12226.1 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 8.100e-37 Identity = 73/131 (55.73%), Postives = 91/131 (69.47%), Query Frame = 1
BLAST of Spo12226.1 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2) HSP 1 Score: 152.9 bits (385), Expect = 2.400e-36 Identity = 68/118 (57.63%), Postives = 87/118 (73.73%), Query Frame = 1
BLAST of Spo12226.1 vs. TAIR (Arabidopsis)
Match: AT4G14130.1 (xyloglucan endotransglucosylase/hydrolase 15) HSP 1 Score: 177.9 bits (450), Expect = 3.800e-45 Identity = 87/128 (67.97%), Postives = 97/128 (75.78%), Query Frame = 1
BLAST of Spo12226.1 vs. TAIR (Arabidopsis)
Match: AT3G23730.1 (xyloglucan endotransglucosylase/hydrolase 16) HSP 1 Score: 173.7 bits (439), Expect = 7.300e-44 Identity = 80/131 (61.07%), Postives = 97/131 (74.05%), Query Frame = 1
BLAST of Spo12226.1 vs. TAIR (Arabidopsis)
Match: AT5G57560.1 (Xyloglucan endotransglucosylase/hydrolase family protein) HSP 1 Score: 154.5 bits (389), Expect = 4.600e-38 Identity = 73/131 (55.73%), Postives = 91/131 (69.47%), Query Frame = 1
BLAST of Spo12226.1 vs. TAIR (Arabidopsis)
Match: AT4G30270.1 (xyloglucan endotransglucosylase/hydrolase 24) HSP 1 Score: 152.9 bits (385), Expect = 1.300e-37 Identity = 68/118 (57.63%), Postives = 87/118 (73.73%), Query Frame = 1
BLAST of Spo12226.1 vs. TAIR (Arabidopsis)
Match: AT4G25810.1 (xyloglucan endotransglycosylase 6) HSP 1 Score: 152.5 bits (384), Expect = 1.700e-37 Identity = 71/128 (55.47%), Postives = 91/128 (71.09%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12226.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo12226.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo12226.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo12226.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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