Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATGTATGGGGTATTAAAAAAATTAAGTGGGGGGAAATATGCTCATCACATTCACATACAATGAAATGCCATTCTTCCTAACCCCCCCACTCAAACTCCCATATCTTTGTATTTTATGTGAATACACCATGAGATTCTCTCCTTCAAATTCTTATAAATACCCTTTCTCTCTACCCTAAGTTTATGTATTATTTCACCCTTTTCTTGCTTAATTATCATTAAGGTAATTGTTACTTATGTTAGTTCTTTATGTATTATGTATATTTTTTTTTATATCCATTTGTTATTCAAATTCCTTATTTTTTTGGGTGTATTATGGTAGATTTATTGCTAATCACCCTCCATATTAAAGAAAATGGATGCTATTGTGAGCTACAATGGAGCCAAGTATGACTGCCTACTTTTTGGTAAGTTCCAAATAGTATAATTATTACAATAAAATATTAAATAAATGAATTACTCTAGTAAATTTTAAGAATTAATAATTTTGTATTTTAATAATTATGTTTTATAGATTTGGATGATACTCTGTACCCATTGAGCTCAGGGGTGAACTTAGCTTGCAGAAAGAATATAGAAGGTATGTTGTTAAAATTAGTAAGCCATAACATAACCAGGACTAATTTAATTCGGGTTTTGGTGACAGATTACATGCTAAAATACTTGCATATGGATGAAAGTGAGGTACCAAGGATGTGCTTAGAGTTATATAGAGAATATGGCACCACTATGGCTGGTCTTAAGGTCAGAAACTATCCCGTTTACAGACCGGGTGGTTTATCTAAGAGATCGAATTGACTGATTAATTACTGAAGTTTATGTGTATGTAATTCAGGCACTTGGGTATGAATTTGACAACGATGAATTCCACGAGTTTGTTCATGGGAATTTGCCTTATGAAACACTCAAGCCTGATCCTGTGTTGAGAAACCTTCTGCTTTCGACTCCTCAGCGTAAAATTGTATGTATCTTTAGAGTTCGTTACGTTATACTCCCTCTGTTAGCTGAATATTTGTAATAGTTTGACTTTCTCACTTGCCAAGACATCAGTTTGACAGTAATTATATGCAATTACATATTTAGTAAAAACTTTTAAAAATAATTTGAAAAAGTATACATTAAGACTAATCCAACAACATGTTATACAATAACATTTGATTTTGTTATATTAGTAAGAAATTTTGGTCAAAGTTACTGTATAAATAGTGTCTAAGTCAAACTGTTCCAAGTATTCAAGAGCGTAGGAGTACTCTTTTAAGTAAGTAATGGAGATTGTATATTCAATTATTGATATTTCATGGTGTACTTTCTGCAGATATTCACCAACTCTGACAAAGGGCACACAGCTCGTGTGCTTAACAAACTCGGTTTAGGAGATTGCTTTGAGGGAATAATATGCTTTGAGACCCTCAATCATGTAGATGATAAACCAATCTCCAAGTCACATATTTTGTGTAAACCATCTGTAGAAGCGATTGAAGCTGCTGTAAACATCGCCAACTTAGATCCTAAAAGAACAGTAAGAAATTAAATCCTTCATTACAAAATATATCAGTTCAAATTACTGACACTACAAGAATTTGTATCTTTTATGACGTTCTAATAATGAAGGGTCCAAAATCCCGTTGTAAAAGACTTTTGCGACGGCTAAAAACCAAACAAAGACGGGAACAACCGTCGCAGTGTCTTTTATGACAGGTTAACGACGAGATTTTCCATGGGAGATCCCGTCGTTAATCAACGGTTATTGGTCTTTAGCGACGGGATTTTCCGCCGTTAATGGTACAATTTCTTGTAATATGATCCGTAATTATCTGTTGATAAAGTTTCAAGTTAATGATGTGAAGAATTTTTTAATTTCTGTCAGATATTCTTTGATGATAGTGCTAGAAATATTGCAAGTGGGAAAGCGGCTGGACTTCACACTGTTGTTGTAAGTTTTCGTTATTCAAGAATCTTTAAGATGAAATTAAACGGCATATTCTTTGTATCTTCTTTTGCTTTGTTATACTCCCTCCGTCCCATAATTATTTTCCTGTTTGATCAAAAATACGGATTTTAAGAAAAGTGGAATATAGTACATGAAAAAATAGAATAAAGTACAAATGATGATTGAGTTGTATGGAAAAGTGGAATAAAGTACATGTGAAAGAGAATATAGTACATGGGAAAAGTGGAATATAGTACATAGGTGGGGTTTTCAATTCAATTTTAATTAATATAGTACATGAGAAAGTGGGGACCTTAGTAGCCAAAATTAGAAACAGGAAGATAATTTTGGGACGCTCGTTTAGGAAAGCAGGAAGATAATTTTGGGACAGAGGGAGTATATACTAATGTTGTTTGTATATATAGTTCTGTTATTGGAATGTGAGAGAAGACTAAATGACAGAAGAGTGCAACATAGTGACAATACCAACCATTTATCAGGAATCTAATCAGATAGCACTAAAAGATGTGTATGTAAGGCTAAAATTTACCTATAACTTCCTATAGGTACCAAAAGTTTGGTACACAAAGAGCACTATGAGTGTATCCCTTTTAACCCGAAAACTTGAAAAGTACCTAAACTTAATCGGTACTTGAACTAACTTATTAACCCTATAGTGAACTTATGTAACAGATATCCTTGAACTGAACCTTTCTGAGCTTATTAGTTGAGGTGTGAACTGATCTGCAGTTCTGAACTTGTTAGACGTGAAACTTTGAACTATGGTGAAATCTTGTGGTATGAGAATCCACTGACAGTTGGTTTTATGGTGTTGTGCAGGTGGGGAGATCAGATCTTGTTGAAGGGGCTGATTATGCATTAAGGAGTATCCACAACATGAAAGAAGCACTTCCTGAAATCTGGGAAGCTGAGACTAAGGATCACCATGATCAAATCCTTCAGTCCGCGGCTGTTGAGACTGTTGTTCGAGCTTAATATATAAATCCACCCTATCATCCAAATCCTCTCCACCTCAGAACAAAAAACGTGACAACAGTAAAGCCTTGGATTTGTGTGGAAGTTTTTATCAGGGGTGAAGTTTATAACTGTTCTGATGTAATATTATGATCTATTGCATGCAAAATTAACAACATATCAGTCAATTGCATGTACGTAATTGCTTGTATCAACTTGCTAAATGTACAAGATTAATAAATGTCAAGGTATGCAGCATATTGCAGTGTTTTCTGCTGATCTAGTCACTGAGTGGCATGGCATTTGTGTATGAAACTTGTCATGATAAACTAGTTGAACTGAGTCATGATTCATGAAAGCTAGTCTGTCAACAGTCAACTCATGCATCATGAAAAGGACACATAATACATTAATACCTACCTATGATGTCATGGTTTCCATGGAAGAAATTAAGTTGTTATTGCGGCTACTAATTAAAATATGCATGATGAATGCAGACAATAGAG TATGTATGGGGTATTAAAAAAATTAAGTGGGGGGAAATATGCTCATCACATTCACATACAATGAAATGCCATTCTTCCTAACCCCCCCACTCAAACTCCCATATCTTTGTATTTTATGTGAATACACCATGAGATTCTCTCCTTCAAATTCTTATAAATACCCTTTCTCTCTACCCTAAGTTTATGTATTATTTCACCCTTTTCTTGCTTAATTATCATTAAGATTTATTGCTAATCACCCTCCATATTAAAGAAAATGGATGCTATTGTGAGCTACAATGGAGCCAAGTATGACTGCCTACTTTTTGATTTGGATGATACTCTGTACCCATTGAGCTCAGGGGTGAACTTAGCTTGCAGAAAGAATATAGAAGATTACATGCTAAAATACTTGCATATGGATGAAAGTGAGGTACCAAGGATGTGCTTAGAGTTATATAGAGAATATGGCACCACTATGGCTGGTCTTAAGGCACTTGGGTATGAATTTGACAACGATGAATTCCACGAGTTTGTTCATGGGAATTTGCCTTATGAAACACTCAAGCCTGATCCTGTGTTGAGAAACCTTCTGCTTTCGACTCCTCAGCGTAAAATTATATTCACCAACTCTGACAAAGGGCACACAGCTCGTGTGCTTAACAAACTCGGTTTAGGAGATTGCTTTGAGGGAATAATATGCTTTGAGACCCTCAATCATGTAGATGATAAACCAATCTCCAAGTCACATATTTTGTGTAAACCATCTGTAGAAGCGATTGAAGCTGCTGTAAACATCGCCAACTTAGATCCTAAAAGAACAATATTCTTTGATGATAGTGCTAGAAATATTGCAAGTGGGAAAGCGGCTGGACTTCACACTGTTGTTGTGGGGAGATCAGATCTTGTTGAAGGGGCTGATTATGCATTAAGGAGTATCCACAACATGAAAGAAGCACTTCCTGAAATCTGGGAAGCTGAGACTAAGGATCACCATGATCAAATCCTTCAGTCCGCGGCTGTTGAGACTGTTGTTCGAGCTTAATATATAAATCCACCCTATCATCCAAATCCTCTCCACCTCAGAACAAAAAACGTGACAACAGTAAAGCCTTGGATTTGTGTGGAAGTTTTTATCAGGGGTGAAGTTTATAACTGTTCTGATGTAATATTATGATCTATTGCATGCAAAATTAACAACATATCAGTCAATTGCATGTACGTAATTGCTTGTATCAACTTGCTAAATGTACAAGATTAATAAATGTCAAGGTATGCAGCATATTGCAGTGTTTTCTGCTGATCTAGTCACTGAGTGGCATGGCATTTGTGTATGAAACTTGTCATGATAAACTAGTTGAACTGAGTCATGATTCATGAAAGCTAGTCTGTCAACAGTCAACTCATGCATCATGAAAAGGACACATAATACATTAATACCTACCTATGATGTCATGGTTTCCATGGAAGAAATTAAGTTGTTATTGCGGCTACTAATTAAAATATGCATGATGAATGCAGACAATAGAG ATGGATGCTATTGTGAGCTACAATGGAGCCAAGTATGACTGCCTACTTTTTGATTTGGATGATACTCTGTACCCATTGAGCTCAGGGGTGAACTTAGCTTGCAGAAAGAATATAGAAGATTACATGCTAAAATACTTGCATATGGATGAAAGTGAGGTACCAAGGATGTGCTTAGAGTTATATAGAGAATATGGCACCACTATGGCTGGTCTTAAGGCACTTGGGTATGAATTTGACAACGATGAATTCCACGAGTTTGTTCATGGGAATTTGCCTTATGAAACACTCAAGCCTGATCCTGTGTTGAGAAACCTTCTGCTTTCGACTCCTCAGCGTAAAATTATATTCACCAACTCTGACAAAGGGCACACAGCTCGTGTGCTTAACAAACTCGGTTTAGGAGATTGCTTTGAGGGAATAATATGCTTTGAGACCCTCAATCATGTAGATGATAAACCAATCTCCAAGTCACATATTTTGTGTAAACCATCTGTAGAAGCGATTGAAGCTGCTGTAAACATCGCCAACTTAGATCCTAAAAGAACAATATTCTTTGATGATAGTGCTAGAAATATTGCAAGTGGGAAAGCGGCTGGACTTCACACTGTTGTTGTGGGGAGATCAGATCTTGTTGAAGGGGCTGATTATGCATTAAGGAGTATCCACAACATGAAAGAAGCACTTCCTGAAATCTGGGAAGCTGAGACTAAGGATCACCATGATCAAATCCTTCAGTCCGCGGCTGTTGAGACTGTTGTTCGAGCTTAA MDAIVSYNGAKYDCLLFDLDDTLYPLSSGVNLACRKNIEDYMLKYLHMDESEVPRMCLELYREYGTTMAGLKALGYEFDNDEFHEFVHGNLPYETLKPDPVLRNLLLSTPQRKIIFTNSDKGHTARVLNKLGLGDCFEGIICFETLNHVDDKPISKSHILCKPSVEAIEAAVNIANLDPKRTIFFDDSARNIASGKAAGLHTVVVGRSDLVEGADYALRSIHNMKEALPEIWEAETKDHHDQILQSAAVETVVRA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12181.1 vs. NCBI nr
Match: gi|902223207|gb|KNA19388.1| (hypothetical protein SOVF_062020 [Spinacia oleracea]) HSP 1 Score: 524.2 bits (1349), Expect = 1.200e-145 Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 1
BLAST of Spo12181.1 vs. NCBI nr
Match: gi|731331557|ref|XP_010676721.1| (PREDICTED: suppressor of disruption of TFIIS [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 481.9 bits (1239), Expect = 7.000e-133 Identity = 224/255 (87.84%), Postives = 246/255 (96.47%), Query Frame = 1
BLAST of Spo12181.1 vs. NCBI nr
Match: gi|728837250|gb|KHG16693.1| (putative C24B11.05 [Gossypium arboreum]) HSP 1 Score: 397.9 bits (1021), Expect = 1.300e-107 Identity = 190/256 (74.22%), Postives = 221/256 (86.33%), Query Frame = 1
BLAST of Spo12181.1 vs. NCBI nr
Match: gi|823124455|ref|XP_012480252.1| (PREDICTED: uncharacterized protein C24B11.05 isoform X2 [Gossypium raimondii]) HSP 1 Score: 394.0 bits (1011), Expect = 1.900e-106 Identity = 188/256 (73.44%), Postives = 219/256 (85.55%), Query Frame = 1
BLAST of Spo12181.1 vs. NCBI nr
Match: gi|763742033|gb|KJB09532.1| (hypothetical protein B456_001G148700 [Gossypium raimondii]) HSP 1 Score: 394.0 bits (1011), Expect = 1.900e-106 Identity = 188/256 (73.44%), Postives = 219/256 (85.55%), Query Frame = 1
BLAST of Spo12181.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RIR6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_062020 PE=4 SV=1) HSP 1 Score: 524.2 bits (1349), Expect = 8.600e-146 Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 1
BLAST of Spo12181.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CER1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g102470 PE=4 SV=1) HSP 1 Score: 481.9 bits (1239), Expect = 4.900e-133 Identity = 224/255 (87.84%), Postives = 246/255 (96.47%), Query Frame = 1
BLAST of Spo12181.1 vs. UniProtKB/TrEMBL
Match: A0A0B0NQ71_GOSAR (Putative C24B11.05 OS=Gossypium arboreum GN=F383_10665 PE=4 SV=1) HSP 1 Score: 397.9 bits (1021), Expect = 9.300e-108 Identity = 190/256 (74.22%), Postives = 221/256 (86.33%), Query Frame = 1
BLAST of Spo12181.1 vs. UniProtKB/TrEMBL
Match: A0A0D2N9U7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G148700 PE=4 SV=1) HSP 1 Score: 394.0 bits (1011), Expect = 1.300e-106 Identity = 188/256 (73.44%), Postives = 219/256 (85.55%), Query Frame = 1
BLAST of Spo12181.1 vs. UniProtKB/TrEMBL
Match: A0A0D2LYY3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G148700 PE=4 SV=1) HSP 1 Score: 394.0 bits (1011), Expect = 1.300e-106 Identity = 188/256 (73.44%), Postives = 219/256 (85.55%), Query Frame = 1
BLAST of Spo12181.1 vs. ExPASy Swiss-Prot
Match: PHM8_YEAST (Phosphate metabolism protein 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHM8 PE=1 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 4.000e-19 Identity = 68/214 (31.78%), Postives = 108/214 (50.47%), Query Frame = 1
BLAST of Spo12181.1 vs. ExPASy Swiss-Prot
Match: YAI5_SCHPO (Uncharacterized protein C24B11.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.05 PE=3 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 3.700e-17 Identity = 73/230 (31.74%), Postives = 103/230 (44.78%), Query Frame = 1
BLAST of Spo12181.1 vs. ExPASy Swiss-Prot
Match: SDT1_YEAST (Suppressor of disruption of TFIIS OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDT1 PE=1 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 7.000e-16 Identity = 61/195 (31.28%), Postives = 100/195 (51.28%), Query Frame = 1
BLAST of Spo12181.1 vs. TAIR (Arabidopsis)
Match: AT3G62040.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) HSP 1 Score: 355.1 bits (910), Expect = 3.500e-98 Identity = 170/248 (68.55%), Postives = 201/248 (81.05%), Query Frame = 1
BLAST of Spo12181.1 vs. TAIR (Arabidopsis)
Match: AT5G02230.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) HSP 1 Score: 301.2 bits (770), Expect = 6.000e-82 Identity = 149/267 (55.81%), Postives = 189/267 (70.79%), Query Frame = 1
BLAST of Spo12181.1 vs. TAIR (Arabidopsis)
Match: AT5G59480.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) HSP 1 Score: 289.3 bits (739), Expect = 2.400e-78 Identity = 141/269 (52.42%), Postives = 186/269 (69.14%), Query Frame = 1
BLAST of Spo12181.1 vs. TAIR (Arabidopsis)
Match: AT5G59490.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) HSP 1 Score: 288.1 bits (736), Expect = 5.300e-78 Identity = 143/267 (53.56%), Postives = 193/267 (72.28%), Query Frame = 1
BLAST of Spo12181.1 vs. TAIR (Arabidopsis)
Match: AT2G32150.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein) HSP 1 Score: 239.6 bits (610), Expect = 2.100e-63 Identity = 110/232 (47.41%), Postives = 162/232 (69.83%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12181.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo12181.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo12181.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 3
BLAST of Spo12181.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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