Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGTACACTTGGTGGTTGTAGCGGCGTTCCATCTGTCAAGGACGGCGGGCGCAGGTGCGGGTACCGCCACCGCCAACTTTATAACTCCTCGAATCGCGGCTAACTTGATCTGGCCATTTCTAATCAAGCTCTGTTTAAGCCTCAAAGTTTCACCTCAAGATTTAGTTTCTTCGTCCAGATTCTTTCTTTTTCAAATTGCTCAAATATTTGCCCGAAATAACAACAGCAACAATAATAGTACCAGCAACAACAGCAGTCGACTGGATCGGGCAATTCGATTGGTGCGGGAGAGAGTCGTGCTTGCTAGAGATTCTCCGGCGTCGTTACCAAATGATGATGAACAAAGCCTTCATATACTATCAATGCTTGCTCTTTGA ATGGGAGTACACTTGGTGGTTGTAGCGGCGTTCCATCTGTCAAGGACGGCGGGCGCAGGTGCGGGTACCGCCACCGCCAACTTTATAACTCCTCGAATCGCGGCTAACTTGATCTGGCCATTTCTAATCAAGCTCTGTTTAAGCCTCAAAGTTTCACCTCAAGATTTAGTTTCTTCGTCCAGATTCTTTCTTTTTCAAATTGCTCAAATATTTGCCCGAAATAACAACAGCAACAATAATAGTACCAGCAACAACAGCAGTCGACTGGATCGGGCAATTCGATTGGTGCGGGAGAGAGTCGTGCTTGCTAGAGATTCTCCGGCGTCGTTACCAAATGATGATGAACAAAGCCTTCATATACTATCAATGCTTGCTCTTTGA ATGGGAGTACACTTGGTGGTTGTAGCGGCGTTCCATCTGTCAAGGACGGCGGGCGCAGGTGCGGGTACCGCCACCGCCAACTTTATAACTCCTCGAATCGCGGCTAACTTGATCTGGCCATTTCTAATCAAGCTCTGTTTAAGCCTCAAAGTTTCACCTCAAGATTTAGTTTCTTCGTCCAGATTCTTTCTTTTTCAAATTGCTCAAATATTTGCCCGAAATAACAACAGCAACAATAATAGTACCAGCAACAACAGCAGTCGACTGGATCGGGCAATTCGATTGGTGCGGGAGAGAGTCGTGCTTGCTAGAGATTCTCCGGCGTCGTTACCAAATGATGATGAACAAAGCCTTCATATACTATCAATGCTTGCTCTTTGA MGVHLVVVAAFHLSRTAGAGAGTATANFITPRIAANLIWPFLIKLCLSLKVSPQDLVSSSRFFLFQIAQIFARNNNSNNNSTSNNSSRLDRAIRLVRERVVLARDSPASLPNDDEQSLHILSMLAL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12172.1 vs. NCBI nr
Match: gi|902229360|gb|KNA21479.1| (hypothetical protein SOVF_042800 [Spinacia oleracea]) HSP 1 Score: 236.1 bits (601), Expect = 3.300e-59 Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 1
BLAST of Spo12172.1 vs. NCBI nr
Match: gi|870845049|gb|KMS97881.1| (hypothetical protein BVRB_5g123110 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 156.4 bits (394), Expect = 3.300e-35 Identity = 88/134 (65.67%), Postives = 103/134 (76.87%), Query Frame = 1
BLAST of Spo12172.1 vs. NCBI nr
Match: gi|359474373|ref|XP_003631446.1| (PREDICTED: uncharacterized protein LOC100855263 [Vitis vinifera]) HSP 1 Score: 64.3 bits (155), Expect = 1.700e-7 Identity = 51/129 (39.53%), Postives = 71/129 (55.04%), Query Frame = 1
BLAST of Spo12172.1 vs. NCBI nr
Match: gi|567895660|ref|XP_006440318.1| (hypothetical protein CICLE_v10022924mg [Citrus clementina]) HSP 1 Score: 61.2 bits (147), Expect = 1.500e-6 Identity = 47/129 (36.43%), Postives = 71/129 (55.04%), Query Frame = 1
BLAST of Spo12172.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRE1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_042800 PE=4 SV=1) HSP 1 Score: 236.1 bits (601), Expect = 2.300e-59 Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 1
BLAST of Spo12172.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BAC3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g123110 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 2.300e-35 Identity = 88/134 (65.67%), Postives = 103/134 (76.87%), Query Frame = 1
BLAST of Spo12172.1 vs. UniProtKB/TrEMBL
Match: F6HPB7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0154g00580 PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.200e-7 Identity = 51/129 (39.53%), Postives = 71/129 (55.04%), Query Frame = 1
BLAST of Spo12172.1 vs. UniProtKB/TrEMBL
Match: A0A067F227_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038730mg PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.000e-6 Identity = 47/129 (36.43%), Postives = 71/129 (55.04%), Query Frame = 1
BLAST of Spo12172.1 vs. UniProtKB/TrEMBL
Match: V4T098_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022924mg PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.000e-6 Identity = 47/129 (36.43%), Postives = 71/129 (55.04%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12172.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 4
BLAST of Spo12172.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo12172.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo12172.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 0
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
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