Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAAATACATAAACCTACAACAATATCTCTCTCTCTCTTTCTTTCTTTCTCCCCTTGCCTCTAGTATATATACACGTGTGCTTTAATTTGGTAATTGTATTGATGGCTATTACTAGACCTCCGGGGAGGGTTCCGGTGGCCGTGGGGCGCCGGATGTTGGCGTATGAGAATTCCGTTGGTGATGAGAAGTTGGAGTTTTACGACGAGTTAGCGGTTAGTTCGTCGGATTCGGTGTTTGGGTTTTTGGAGGGGTCGCTTGAGAGTACGACGAGTAATGAAGGCTATCACCAAGAGGGTGATGCTATTTTCGATGAGGAAGAAGAGGAAGAGGATTCTGGGAATAGATTTGAAGAAAATAAGACTTTTTGGGAAAATCAGCATAATCTTTTACAGGTACTTTTTTTATATAAATATTTGGTATTATTTAATTTTTTTTGGGTGTTTTTGTTAATTTCATGGATTTATTTCCTAATTCCTATATGAAAAAGTCTTGTTTGATTAGGAAAACCGCAAAACTCCCTACACAAACGAAACAAAAGTAGTTAATATGTTTTCTAAAGTACCTTTGTTGTTAAAATCAGTCTATGTCATAGGGTTAAATTTTAAATTTTTAATTTAGGAATTCAAGACAAAATTATGCTTCAATCATGAAGTTAATGTTTGATTTAGTTAAATTATTTCATTATTACTCCGTCGAAAAGATTAAAATAATACACCTAGACCGGAATACCTAAAGAAAAATAAAAAGGAATAAAGGTAATGACTTTTAACGGGATATGTATACAATTTCCCTATTTGAAATCTTTAAAAAGAAAAGTGAGATAAATTTTATTTTGTGCATAATTAGACGTTTGTAAATCTGAAGTTAACTTTGATTTTGTATGATAAATTGTTACAGGCAACATTGTGCCGTACGACATCCTTAGAAACAGGAATGAGAAATGTGACAAAAGAGGCATTGAAAGAGTTACAAGTTCAAGGGCATTATTGTAAATGTGGCAAAGCGGTGGCCGACAACAATTGCCGAAGTTGCTTGATGAGGGAGGTGTCTTGTAGGCTCCGGAATGCCGGTTACAACAGTGCCATTTGCCGGACTAAATGGCGAAGTTCACCGGATATTCCTTCAGGTAAAAATTCATACTTCATACAGAGTACCTTGTTTATTTTAGTTGTTCGTGTTGCATTTGAACATTTGATCTTAAACTCGTTTGACACTGTTTTCTATTCACTTAGTCTAGTCTAATTTGTCTAGATGTCTTATGTGATACGAACATTTTTACTTTTTCTATATGTTATGATCTGATCTAATAAGTAATAAAAATAAGGCGAATAGAATAGAGCTTAATTAGTCAATGCATTTAATGGTCAAAATTAAAGTTAGGAGATTTTTAGTGTTTTTTAAGTTATTAATGAGCTGGGTATGTGTCATTTGACTCATTTGATAGGTTTTCTTAACAAGTTTTGGATAAAATTTTACTGGTCTACCTGCCTCTAATGTTGCCTCTAATTCATAAGGTGGACTAATTGGTGATTTGGTATAGATCTCATTCAAGGATGGTATACTCGTACATGTAACTAGTCTTATTTTTTTATATTTGGAAATATCCTTTTAATAGAAACATCGAAACAAGGACTGCGGGAATTGAAAAGTAGATAGATATATAGGCGAAAGCTAAAAGTTAATCATAAATCAAATGATTTTTTTTCGTTTAGTTCCTTAGTAAACACTGATTTTAAAACAATTAGTTGGCTAAATTTTCAAGCGAACGTACCATGATGACAATCACAAAAATAGATTTTTTAATTTTTCTTTCTTTTTCCTCCTTTGTCTTTATACTTTGGTCCATCAATTTGAAGAAAGGAATATGTTTCTCACAGATGGGACGACATTAGCAAGTTGTTCGTTGGTTGTTACTCCCCGAATTTCTTAATCTCTAAATAGATCTTTTTGGACTAAGATGTAGATCCAACGTAAGTTGAGTAGGATTGATTTGACTATTGAGCCACAATTTAAATATGCTTTAAAATAAAGGCTAATATGTTAGGCTTTTGTCTTCCATGAATCAAGCGAAATACCCCTTCGCCTCCCCTAGTTCAACCGAAGGGGGAAAATAAGGACTGGTCTGATTTGGTTTAAGTGAATGCTATTTTGTAAAATACTTTTTAGTATTCTGTGTACGTTCTTTTGATTATGAAAAATGTTTTAAGTCGTGACCCTTAGAGAAACATGTTAGCATGGGTGATGCCGTAATGATAAAGGTCGCGAGTTGCGATAATATTTAGTTGTGGAAAGAGAGAGACAATATAATAATTGTGGGGTCATTTCTAATTTAGAAGTATAACAACTAATCTGAAACGGACGAAAAAGGTAAGTGTAATAACTAATCTGGGACGGAGAAAGTATTTAAGTTTTCAATTTAAATCATGACACATAAGCATAAAATGTCATCCTTGTGACACGACCTTTATCATTTTCGAACATGTTAACACTTGGATTACCATGATTATTTTTTCTATAACTTCATATCTTAAGCTGGTGGAAATTTTCATCTAAATTTGGTGCTACTCATTTTCATCTATAGGTGAACATACATTCATTGATGTAGTAGACAATTCAAGCTCGAAAAAGGGAGAAGTAAAGGTGATAGTCGAACTAAGTTTCAGAGCGGACTTTGAGATGGCTAGAGCAAGCGACGATTATAACCAATTAGTCAGTCGCTTGCCCGAGGTTTTTGTAGGGAAAAACGAAAGACTAAAGGCTTTAATCAAAATTTTGTGCGCGGCCGCCAAGAAATGCATGAAGGATAAGAAAATGCATATGGGGCCATGGAGGAAGCAAAAATACATGCAAGCAAAGTGGTTTAGCACCAGTTATGAGAGAAAAGAGGAGGCCAATGCACCATCAAATGGCTCATACTCGAACAGAACGAGCAAACCGGCTAGGGCGTCTTCTATGCTAACAATGGCATTGATGGATATGCATAGGAAAGCCGTTTCAGTCGTGTAATAATCCCTCGAATATGGGTGGGATTTATATCTATTTTGTATCGTTTTCCATGATCTTTCATTTAGTCTTGAAAGAGTGTATAGGGATTATATTGCGGGATGTAATACTAGTAGGTAGGAATGTGTGATATAGGTGTGGCTTTAGATACCAACCATGGCTTTGAAATAGTAGTGTGCAAATGTGCAATCTTCCATTTTTGTAATGTTTGGCTTGATAGTTAATTGGAAAGCATTAAGGATTTAAGCTTTCAATACATCTAGTTTAAATCACGGTTTGTGTTTAAGCTAAAGGCTATAACATCTACCGGGTATCTAGACTATTTTGGTTTCCAGACCTGGGGTCGATTCTCACCAAATTTATTGTTGCATTTTTAGTTTTTTCATTTATGTTTGAGTGGAGGATTATCGCCAAAATTACGTCAACTGGGTTTGTGACCATATTGAAACAAGACACCAACACGATTGATGTTGTCGGGTTTTTCCGATCAGGTGATGACTTGGAGGTTATTGGTAGAATACGACACGGTCTCTGCTCCGACCTGCAAAATAAGAATATTCCTCTCCGATGTCTAAGTAAGTGAGAAAACGTAGAGAGAAGGCAGAGCATAATATACTTGTAGTTGTTGGGAATTTAATGTCCTTGTCCTTGGGATTTGGTGCTTTATATAGTACTAGGTTTACAAGGAATGATCTAGAACTCCTCCATATGATTGGCTGAGTTTGGAGGAGAGGACATGTGTTATTCTCCTTTGCAGTTATGTAGATTAAGGACATAAATGGGCTTTTGGGGCTTTTGTGCCAGGTGAAAGAGTCCAAAAGGCATACATCATTTATACGGATGCAAATAGGGAAGTATTTATCCACCTGTAAGGCAATGAGTGGGACATGTTGTTTTTCTCCCGTGGACTAAAGACTGCATACGAGGCATGACTTGTGCCACGTGTTGCCATCTTACTGGTACAATCTGGCACGGTAATTTTGCCTACAACATTTACCCCTCAAGGAGGGTATTTCTGGAAACAATATTTCAGATGTCCCTTCTTGACTCTTGATGTTCAGATGACACTTGGGGACTTTTTGTGAGATGGTGACAAGTGTACGAATCTCACTTCTGCCCCTCAAAAAAAAAAAGGGTAATTCCTCATTTTTCACGCTCATTATATTTTTGCAGAGCCCAAGAACAGGTGATTTTCGACGAGGAACCAACACCAGTAGGCGATTTCCGGCCACCGTGTGGTTCAACCTTGTTCTTCACTAGACTCAACGTGTTCTTGCAAAACTCAACCTGTTCTTCAACAAAACTCATCCGATTTCATCTCAGATTCATTAAGGTTAGCGTCTCGTCTCTTCGTATATGTTTTCGTTGACTTGTTAATTTTTGCATTAAGTATTTTGAACCTGGTGGGTGGACGTCAATCTTGCAATAGACGTGCGCTGGTTAGGCTCTTAGTGCCGTGCAGGTGATTATTGGCAGAGCACATACTCGATCGTCCTTTTTCCTTATTCTCGACCTTCCCTAAGCCGTATTTTGTAAAACTATGCAGACGGCATAGCGAGAACAAAGCAAACGGCAGATCCGACCCGCTTACGCCTGAGGGACGAGGCTTCGGGACCTTCTGAGAGAAACTCTTCCACAGAACCGACCCCCGAAGATGAATATGCCGACCTCTTTCAAGAGATTGACGAGTATGTTGGCCAGGGAGCTGAAGGGACGGCCAGTTCCTCTGATCGCACAAGAGTGGATGAGGCTTTGTTGGTGGGTCAGGCAGCGCAAGAGGAAGCGCCGGCTAAAACTAAGGCATTGGACAAGCCGGGTGGCAAGGAGGAGGCTCACCTTCTTCCGTTAGACATTCATCCAGATCAAGGGTGGATGAAATGGCTAGACAAGCACGGAGCCGAGCTTAGAGACGACCTGTGCGTCAGCCCAGGATATGAAATGAGGGTGCTGGCGACCTGGACTCCACCGTGAGCCTCCTAGCTGATGGAGAGTTCCCCGTATATGCCGCCGCCATTAAACTGGGCATGCGTTTTCCGCCGCACCCCTTTGTGGTGGTGGTGCTTGATGCACTAGTGGAAAATGGCTCATTTGCATCGGTCATTTAAGGTCATTTGCGTCGCACAAATGACTCTCATTTGCGTCGCACATTAGCTAAATGTGCGACGCAAATGACCTTTTTAGCGCCAAAAAAATAAGCCATTTACATCGCACATTAAGCTAATGTGCGACGCAAATGACTTTCTTTCCTTCTATTCATCATTTGGCTTTGACCAAAAAAGGGTCTTGATAAGTACCTGACAGACTGAAGGCTTGGAACTTTACCCGCTGAAGGAAGAAGACTGATGGAACCTGGATTTTGTAAAAAAAATATGTTTCATTTTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGAAAATGAAACCTATTATATAGTAAAATGGACAACTCATATTATTAAATAGAACCACATCAAATCAGTAAGACTTACAATACAAAAGCTTGAAATATCTACAACAATATATTCCATCTAACGGTTTCTCTTGACACCCAACAAAAAAAAAAATAGCTGCTGCCCGGAATCCTCTAATGTTTCCCTTGCTTCCAGTGTAGTATCAAGCAACGTCCCAACAATCAAGGCCAAGGCATAGCAAGTGATGAGAAAAGTGCATTTAGTATGTCAGTCAAATTGGTTTTGGTGTACAGATCGTGA AAAAATACATAAACCTACAACAATATCTCTCTCTCTCTTTCTTTCTTTCTCCCCTTGCCTCTAGTATATATACACGTGTGCTTTAATTTGGTAATTGTATTGATGGCTATTACTAGACCTCCGGGGAGGGTTCCGGTGGCCGTGGGGCGCCGGATGTTGGCGTATGAGAATTCCGTTGGTGATGAGAAGTTGGAGTTTTACGACGAGTTAGCGGTTAGTTCGTCGGATTCGGTGTTTGGGTTTTTGGAGGGGTCGCTTGAGAGTACGACGAGTAATGAAGGCTATCACCAAGAGGGTGATGCTATTTTCGATGAGGAAGAAGAGGAAGAGGATTCTGGGAATAGATTTGAAGAAAATAAGACTTTTTGGGAAAATCAGCATAATCTTTTACAGGCAACATTGTGCCGTACGACATCCTTAGAAACAGGAATGAGAAATGTGACAAAAGAGGCATTGAAAGAGTTACAAGTTCAAGGGCATTATTGTAAATGTGGCAAAGCGGTGGCCGACAACAATTGCCGAAGTTGCTTGATGAGGGAGGTGTCTTGTAGGCTCCGGAATGCCGGTTACAACAGTGCCATTTGCCGGACTAAATGGCGAAGTTCACCGGATATTCCTTCAGGTGAACATACATTCATTGATGTAGTAGACAATTCAAGCTCGAAAAAGGGAGAAGTAAAGGTGATAGTCGAACTAAGTTTCAGAGCGGACTTTGAGATGGCTAGAGCAAGCGACGATTATAACCAATTAGTCAGTCGCTTGCCCGAGGTTTTTGTAGGGAAAAACGAAAGACTAAAGGCTTTAATCAAAATTTTGTGCGCGGCCGCCAAGAAATGCATGAAGGATAAGAAAATGCATATGGGGCCATGGAGGAAGCAAAAATACATGCAAGCAAAGTGGTTTAGCACCAGTTATGAGAGAAAAGAGGAGGCCAATGCACCATCAAATGGCTCATACTCGAACAGAACGAGCAAACCGGCTAGGGCGTCTTCTATGCTAACAATGGCATTGATGGATATGCATAGGAAAGCCGTTTCAGTCGTTATCAAGCAACGTCCCAACAATCAAGGCCAAGGCATAGCAAGTGATGAGAAAAGTGCATTTAGTATGTCAGTCAAATTGGTTTTGGTGTACAGATCGTGA ATGGCTATTACTAGACCTCCGGGGAGGGTTCCGGTGGCCGTGGGGCGCCGGATGTTGGCGTATGAGAATTCCGTTGGTGATGAGAAGTTGGAGTTTTACGACGAGTTAGCGGTTAGTTCGTCGGATTCGGTGTTTGGGTTTTTGGAGGGGTCGCTTGAGAGTACGACGAGTAATGAAGGCTATCACCAAGAGGGTGATGCTATTTTCGATGAGGAAGAAGAGGAAGAGGATTCTGGGAATAGATTTGAAGAAAATAAGACTTTTTGGGAAAATCAGCATAATCTTTTACAGGCAACATTGTGCCGTACGACATCCTTAGAAACAGGAATGAGAAATGTGACAAAAGAGGCATTGAAAGAGTTACAAGTTCAAGGGCATTATTGTAAATGTGGCAAAGCGGTGGCCGACAACAATTGCCGAAGTTGCTTGATGAGGGAGGTGTCTTGTAGGCTCCGGAATGCCGGTTACAACAGTGCCATTTGCCGGACTAAATGGCGAAGTTCACCGGATATTCCTTCAGGTGAACATACATTCATTGATGTAGTAGACAATTCAAGCTCGAAAAAGGGAGAAGTAAAGGTGATAGTCGAACTAAGTTTCAGAGCGGACTTTGAGATGGCTAGAGCAAGCGACGATTATAACCAATTAGTCAGTCGCTTGCCCGAGGTTTTTGTAGGGAAAAACGAAAGACTAAAGGCTTTAATCAAAATTTTGTGCGCGGCCGCCAAGAAATGCATGAAGGATAAGAAAATGCATATGGGGCCATGGAGGAAGCAAAAATACATGCAAGCAAAGTGGTTTAGCACCAGTTATGAGAGAAAAGAGGAGGCCAATGCACCATCAAATGGCTCATACTCGAACAGAACGAGCAAACCGGCTAGGGCGTCTTCTATGCTAACAATGGCATTGATGGATATGCATAGGAAAGCCGTTTCAGTCGTTATCAAGCAACGTCCCAACAATCAAGGCCAAGGCATAGCAAGTGATGAGAAAAGTGCATTTAGTATGTCAGTCAAATTGGTTTTGGTGTACAGATCGTGA MAITRPPGRVPVAVGRRMLAYENSVGDEKLEFYDELAVSSSDSVFGFLEGSLESTTSNEGYHQEGDAIFDEEEEEEDSGNRFEENKTFWENQHNLLQATLCRTTSLETGMRNVTKEALKELQVQGHYCKCGKAVADNNCRSCLMREVSCRLRNAGYNSAICRTKWRSSPDIPSGEHTFIDVVDNSSSKKGEVKVIVELSFRADFEMARASDDYNQLVSRLPEVFVGKNERLKALIKILCAAAKKCMKDKKMHMGPWRKQKYMQAKWFSTSYERKEEANAPSNGSYSNRTSKPARASSMLTMALMDMHRKAVSVVIKQRPNNQGQGIASDEKSAFSMSVKLVLVYRS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12106.1 vs. NCBI nr
Match: gi|902172357|gb|KNA08111.1| (hypothetical protein SOVF_165580 [Spinacia oleracea]) HSP 1 Score: 583.9 bits (1504), Expect = 1.800e-163 Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 1
BLAST of Spo12106.1 vs. NCBI nr
Match: gi|731350412|ref|XP_010686492.1| (PREDICTED: uncharacterized protein LOC104900698 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 450.7 bits (1158), Expect = 2.400e-123 Identity = 240/314 (76.43%), Postives = 268/314 (85.35%), Query Frame = 1
BLAST of Spo12106.1 vs. NCBI nr
Match: gi|802785461|ref|XP_012091611.1| (PREDICTED: uncharacterized protein LOC105649549 [Jatropha curcas]) HSP 1 Score: 339.0 bits (868), Expect = 1.000e-89 Identity = 192/312 (61.54%), Postives = 238/312 (76.28%), Query Frame = 1
BLAST of Spo12106.1 vs. NCBI nr
Match: gi|255536801|ref|XP_002509467.1| (PREDICTED: uncharacterized protein LOC8288057 [Ricinus communis]) HSP 1 Score: 325.1 bits (832), Expect = 1.500e-85 Identity = 177/300 (59.00%), Postives = 223/300 (74.33%), Query Frame = 1
BLAST of Spo12106.1 vs. NCBI nr
Match: gi|566164890|ref|XP_002305794.2| (hypothetical protein POPTR_0004s04420g [Populus trichocarpa]) HSP 1 Score: 323.2 bits (827), Expect = 5.700e-85 Identity = 184/292 (63.01%), Postives = 228/292 (78.08%), Query Frame = 1
BLAST of Spo12106.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QNH1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_165580 PE=4 SV=1) HSP 1 Score: 583.9 bits (1504), Expect = 1.200e-163 Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 1
BLAST of Spo12106.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BRV1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g183110 PE=4 SV=1) HSP 1 Score: 450.7 bits (1158), Expect = 1.600e-123 Identity = 240/314 (76.43%), Postives = 268/314 (85.35%), Query Frame = 1
BLAST of Spo12106.1 vs. UniProtKB/TrEMBL
Match: A0A067JDY7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21449 PE=4 SV=1) HSP 1 Score: 339.0 bits (868), Expect = 7.000e-90 Identity = 192/312 (61.54%), Postives = 238/312 (76.28%), Query Frame = 1
BLAST of Spo12106.1 vs. UniProtKB/TrEMBL
Match: B9RBD3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1674520 PE=4 SV=1) HSP 1 Score: 325.1 bits (832), Expect = 1.000e-85 Identity = 177/300 (59.00%), Postives = 223/300 (74.33%), Query Frame = 1
BLAST of Spo12106.1 vs. UniProtKB/TrEMBL
Match: B9H2U2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s04420g PE=4 SV=2) HSP 1 Score: 323.2 bits (827), Expect = 4.000e-85 Identity = 184/292 (63.01%), Postives = 228/292 (78.08%), Query Frame = 1
BLAST of Spo12106.1 vs. TAIR (Arabidopsis)
Match: AT4G32480.1 (Protein of unknown function (DUF506) ) HSP 1 Score: 253.4 bits (646), Expect = 1.900e-67 Identity = 148/281 (52.67%), Postives = 190/281 (67.62%), Query Frame = 1
BLAST of Spo12106.1 vs. TAIR (Arabidopsis)
Match: AT2G20670.1 (Protein of unknown function (DUF506) ) HSP 1 Score: 250.4 bits (638), Expect = 1.600e-66 Identity = 131/244 (53.69%), Postives = 178/244 (72.95%), Query Frame = 1
BLAST of Spo12106.1 vs. TAIR (Arabidopsis)
Match: AT4G14620.1 (Protein of unknown function (DUF506) ) HSP 1 Score: 113.6 bits (283), Expect = 2.400e-25 Identity = 59/159 (37.11%), Postives = 99/159 (62.26%), Query Frame = 1
BLAST of Spo12106.1 vs. TAIR (Arabidopsis)
Match: AT2G38820.2 (Protein of unknown function (DUF506) ) HSP 1 Score: 113.6 bits (283), Expect = 2.400e-25 Identity = 54/150 (36.00%), Postives = 99/150 (66.00%), Query Frame = 1
BLAST of Spo12106.1 vs. TAIR (Arabidopsis)
Match: AT3G07350.1 (Protein of unknown function (DUF506) ) HSP 1 Score: 112.5 bits (280), Expect = 5.400e-25 Identity = 79/270 (29.26%), Postives = 139/270 (51.48%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12106.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo12106.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo12106.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo12106.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|