Spo12073 (gene)

Overview
NameSpo12073
Typegene
OrganismSpinacia oleracea (Spinach)
Description60S ribosomal protein L38
Locationchr4 : 9181657 .. 9185095 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACATATCAACCAAAGCCCAATACCACATTTTGCTACCTTTATAATTGGGCTACAAACTAAAACGAAAATTGACAAAATTGGCCCAACTCCAAAAGCCCAAATCAATAATACCAATAAATAGTTAAGGAAATTGCAATAAAAAAACAGGGACAAAATCGGAAACAATACAATCTCAAAATTAGGGTTTTTCACATAACAACTACAAACCCTACATATATACTTCCCATCCGCCGGAAAACCAGAGGAGAGAGAATTCTTCATCAGCTCAAACCGGTACTTGGCATTTTCGAGCTTAGCAAAAATGGTATAATTTCTCGAACATTTCTCTATTTGTTTACTGATTTGTTCTCTTTGATCTGTTAGAAATGATGAATTATTGTAGTTAATTTCTCTAAATTACCAGATTGTTTATAGCATTTTATAATGGTTGTTCTTAGGAATTATTGGCAATTTCTGGGTATTACAAATTGATTCATTCTGTTAGTATTTAATTGAGAAATCGATAGTTTACATTGAATTTGCTATTCATTTATTATTTAGGATCTAGGAGTTTGCGGGGGTATAGTAATGCATTTTTTTTAGCTCAAAGTGTGTGTTGATTTATCTTATAGCATGAAATTTATACAGCAGATTGCTTCGGATCGAGTACTGATGAGCTTAATTTAAATCATTAATGACGATGAATCTTAGTTGGGATAGTTGGGAAGAGAGTGGTTAGCTTAGGTTTGGGTAAAGTTGTTGATCGATTTAAAGTTTAATGGATTTAAAATTGAGGGTTGTACCATTTTTCTTTTTGATATTAGGTTGCTTTTGATTTGATTTGATTTGATGTTATAATCGGAGGTATTGTGAATCAACCCAATGCGTGTAAATACTGATTCTTAATTGGGAAGAGAGTGGTTAGCTGAGGTTTGGGTAAATTTGTTGATTGATTCAAAGTTAAATGTAGAGAGGTTTGTGCATGGTGTTATGTTGTTCTGCATAGTGTAGGGTTGTGCCATTTTTTTTTGATTAAAAAATCTGGGTGTTTTTTTATTTACTGTTTTAATTGTATGTGTTGTGAACCAATCCAATGCGTCGAAAATACTGATTACTAGCGTTGAACCTTATTAATGGGCGTTATGTATGAGCCGATGCGAAATTTACCTCCATGTTTGAATTTTGTTAGGCAGAGGTTGTATACTCTTTCTTTACTTGAACAGGGATATATGTTTATCACTCATTTGACATGTAGTGGGGTTTTAATAATCAACCTTAGCCTAGTGATAGTGATAATTCGTGTCTTTTGTTTTCTATATTGAATATAACATAGATCTATTTAGTGCGTCGAAATACTGATTACTAGCGTTTAACCTTTATTATGGGCGTTATGTATGAGCCGATGCGAAATTGAACTCCATGTTTGAATTTGTTTTGGGAAGAGGTTGCATACTCTTTCTTCACTCATTCATGGATATATGCTTATCACTCATTTAACATACAGTCAGTGTAGATACTGAGTAGTTAGCTTCCCTTGGCCTGGTATGTCAATAAATGATAATTTAGCCGTATTTCTAGTTTGACAGCACTGATTAGGGTGTTTTGATGTGTTCTCTAATGTATACAACATGAACTGATAGTGTGTGCGTCGAAAATACTGATTACTGGCGCTGTATTTTAATGGGCGCTAAGTATGAGCCGACGCGAAATCAACTCCATGGTTGAATCTGATAGGGAAGAGGCTGTGTACTCTTTCTTCATTATACCGTGGATATATGCTTATAAAGTTTATAGATATACTGAATAGTCAGCTTCCCTAGTCCTATAAAGAGTATAGATATACTGAATAGTCAGCTTCCCTAGTTCTGGGAAGTCAGATAAATGAAATTTTAGCCCTATTTCTAGTTTGACAGCACTGATTTGGGGTGTTTTGATGTGTTATCTAAACTGTATATAACAAGAACTGATAGTGTGTGCGTCGAAAATACTGATTACTGGCGCTGTGTTTTAATGGGCGCTATGTATGAGCCGACGCGAAATCAACTCCACGGTTGAATCTTAATGGGAAGAGGCTGTATAATGTCGATTCTTTTCTCAATTGGGGATACATTTACATTTTCAGACATACATCGTAATGTGTAACCTAGCTTTTTGGGCTACTGAAATAGTTATATGATTTGGTTGTTAACTGTTGGCACCTACTCTTTTGTTGACCTGATCTTATGTTGTTGAGTACACAGTTTTGAAAATGTTTTGAGGGTTTGTTACACTATAAGTAATGTTTGTATCCTATTTTGATTTTGACAGCCGAAACAAATTCATGAGATCAAGGACTTCCTTCTCACAGCCAGAAGGAAGGATGCACGATCTGTCAAGATCAAGAGAAGCAAGGATGTCGTGAAGTTCAAGGTTCGCTGCTCCAAGTATCTCTACACTCTTTGCGTCTTCGACAATGAGAAGGCCGACAAGTTGAAGCAATCTCTTCCCCCAGGTAGTTTTTTTCAACATAATCATGTTCTCCTTTCTGGTAGACTGTTTACATTTTCTTAGACCCGATCACATTGCGAGTCGGGTTGTGTTTGGGCTGGGCCACGATCTAAACATTCAACCCACTATGTCTGGCTGGGTCAAAATTCTGCCAAAACGCGTATTTTGCGCAAATTTATAACTAAAGATGCAATTTTGAGTTGGACAAAATTCATTGAAAAAATTTAAAAAAATTGGGCCGGTGTTCTAAGTCTATATTTTTTGCGCAAACCCACTATTTTTGGGCTGGGCTTATGGTCAGGTCTACATTTTTGGGCTATGGTCTTAAAAATTCAACCCACTATGTCAGGCTGGGCCAAAATTCTGCCAAAACCCCGTATTTGGGCAAAAAAAGCGGGCTTTTGGGCAAATTTATAACTAAAGATGCAATTTTGAGTTGTCAAAAATCCATTGAAAAATAAAACAACTGGGCTGGGCTTTGGGTCTATATTTTCTGCGCAAACCCTTTATTTTCGTGCCGGGCTCATGATGGTCATGTCTAAATTTTCTTTTCCGTGAACTGAAAATTCTCGTCCTTTGCAGGTTTGAGCGTTCAAGATCTTTAGATGATATGGACATGAAGTGTGATACTTGCATTCGAGAGTTTGAGAAAGTTTTTAATTTTTTGTTTTGCAAGTTTAGAACATTATTATGTCAATGGACTCCTGTATTTCAGAGAAGAGAATATTATTAGTAGGTGTTTTTTGTTATGCGAATTGTGACAATTTTGCGAAAATACAATGGATTTCTTCTTGTAGGGTTGTGTTTTAGTTTCTTGTTAAATTTAGCACTTCCTCTTTTGAAAATGCTCCTTTGACCATTACAGAATTTATGCACTTATCTAATCTGTTTGATAAAATTTTCTGGTTGCTGTATCATGTGAAGGGTAAATTGGTTATTTATTGCTTTTAGGACTTTTCTAATTGTTTTCTAG

mRNA sequence

ACATATCAACCAAAGCCCAATACCACATTTTGCTACCTTTATAATTGGGCTACAAACTAAAACGAAAATTGACAAAATTGGCCCAACTCCAAAAGCCCAAATCAATAATACCAATAAATAGTTAAGGAAATTGCAATAAAAAAACAGGGACAAAATCGGAAACAATACAATCTCAAAATTAGGGTTTTTCACATAACAACTACAAACCCTACATATATACTTCCCATCCGCCGGAAAACCAGAGGAGAGAGAATTCTTCATCAGCTCAAACCGGTACTTGGCATTTTCGAGCTTAGCAAAAATGCCGAAACAAATTCATGAGATCAAGGACTTCCTTCTCACAGCCAGAAGGAAGGATGCACGATCTGTCAAGATCAAGAGAAGCAAGGATGTCGTGAAGTTCAAGGTTCGCTGCTCCAAGTATCTCTACACTCTTTGCGTCTTCGACAATGAGAAGGCCGACAAGTTGAAGCAATCTCTTCCCCCAGGTTTGAGCGTTCAAGATCTTTAGATGATATGGACATGAAGTGTGATACTTGCATTCGAGAGTTTGAGAAAGTTTTTAATTTTTTGTTTTGCAAGTTTAGAACATTATTATGTCAATGGACTCCTGTATTTCAGAGAAGAGAATATTATTAGTAGGTGTTTTTTGTTATGCGAATTGTGACAATTTTGCGAAAATACAATGGATTTCTTCTTGTAGGGTTGTGTTTTAGTTTCTTGTTAAATTTAGCACTTCCTCTTTTGAAAATGCTCCTTTGACCATTACAGAATTTATGCACTTATCTAATCTGTTTGATAAAATTTTCTGGTTGCTGTATCATGTGAAGGGTAAATTGGTTATTTATTGCTTTTAGGACTTTTCTAATTGTTTTCTAG

Coding sequence (CDS)

ATGCCGAAACAAATTCATGAGATCAAGGACTTCCTTCTCACAGCCAGAAGGAAGGATGCACGATCTGTCAAGATCAAGAGAAGCAAGGATGTCGTGAAGTTCAAGGTTCGCTGCTCCAAGTATCTCTACACTCTTTGCGTCTTCGACAATGAGAAGGCCGACAAGTTGAAGCAATCTCTTCCCCCAGGTTTGAGCGTTCAAGATCTTTAG

Protein sequence

MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSLPPGLSVQDL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12073.1Spo12073.1mRNA


Homology
[Close]
BLAST of Spo12073.1 vs. NCBI nr
Match: gi|902189617|gb|KNA11420.1| (hypothetical protein SOVF_135380 [Spinacia oleracea])

HSP 1 Score: 139.0 bits (349), Expect = 3.000e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

		  

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69
[Close]
BLAST of Spo12073.1 vs. NCBI nr
Match: gi|629123314|gb|KCW87739.1| (hypothetical protein EUGRSUZ_A00108, partial [Eucalyptus grandis])

HSP 1 Score: 137.1 bits (344), Expect = 1.200e-29
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1 

		  

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKADKLKQSL
Sbjct: 32  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 91

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 92  PPGLSVQDL 100
[Close]
BLAST of Spo12073.1 vs. NCBI nr
Match: gi|297735234|emb|CBI17596.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 137.1 bits (344), Expect = 1.200e-29
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1 

		  

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKADKLKQSL
Sbjct: 59  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 118

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 119 PPGLSVQDL 127
[Close]
BLAST of Spo12073.1 vs. NCBI nr
Match: gi|661878012|emb|CDP18171.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 137.1 bits (344), Expect = 1.200e-29
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1 

		  

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKADKLKQSL
Sbjct: 36  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 95

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 96  PPGLSVQDL 104
[Close]
BLAST of Spo12073.1 vs. NCBI nr
Match: gi|359476741|ref|XP_003631881.1| (PREDICTED: 60S ribosomal protein L38 [Vitis vinifera])

HSP 1 Score: 137.1 bits (344), Expect = 1.200e-29
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1 

		  

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69
[Close]
BLAST of Spo12073.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RIP0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_068230 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.100e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

		  

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69
[Close]
BLAST of Spo12073.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CRR4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g057800 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 8.000e-30
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1 

		  

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69
[Close]
BLAST of Spo12073.1 vs. UniProtKB/TrEMBL
Match: D7SPL7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00930 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 8.000e-30
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1 

		  

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKADKLKQSL
Sbjct: 59  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 118

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 119 PPGLSVQDL 127
[Close]
BLAST of Spo12073.1 vs. UniProtKB/TrEMBL
Match: A0A0A0KBT2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G081500 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 8.000e-30
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1 

		  

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69
[Close]
BLAST of Spo12073.1 vs. UniProtKB/TrEMBL
Match: A0A068U8M1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018662001 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 8.000e-30
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1 

		  

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKADKLKQSL
Sbjct: 36  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 95

Query: 61  PPGLSVQDL 70
           PPGLSVQDL
Sbjct: 96  PPGLSVQDL 104
[Close]
BLAST of Spo12073.1 vs. ExPASy Swiss-Prot
Match: RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.700e-31
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1 

		  

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69
[Close]
BLAST of Spo12073.1 vs. ExPASy Swiss-Prot
Match: RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.400e-29
Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = 1 

		  

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69
[Close]
BLAST of Spo12073.1 vs. ExPASy Swiss-Prot
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.500e-26
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 1 

		  

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGL+V++L
Sbjct: 61 PPGLAVKEL 69
[Close]
BLAST of Spo12073.1 vs. ExPASy Swiss-Prot
Match: RL38_MOUSE (60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=1 SV=3)

HSP 1 Score: 112.1 bits (279), Expect = 2.500e-24
Identity = 54/69 (78.26%), Postives = 64/69 (92.75%), Query Frame = 1 

		  

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGL+V+DL
Sbjct: 61 PPGLAVKDL 69
[Close]
BLAST of Spo12073.1 vs. ExPASy Swiss-Prot
Match: RL38_RAT (60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 7.200e-24
Identity = 53/69 (76.81%), Postives = 64/69 (92.75%), Query Frame = 1 

		  

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGL+V++L
Sbjct: 61 PPGLAVKEL 69
[Close]
BLAST of Spo12073.1 vs. TAIR (Arabidopsis)
Match: AT2G43460.1 (Ribosomal L38e protein family)

HSP 1 Score: 135.2 bits (339), Expect = 1.500e-32
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1 

		  

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69
[Close]
BLAST of Spo12073.1 vs. TAIR (Arabidopsis)
Match: AT3G59540.1 (Ribosomal L38e protein family)

HSP 1 Score: 135.2 bits (339), Expect = 1.500e-32
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1 

		  

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 70
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69
The following BLAST results are available for this feature:
BLAST of Spo12073.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902189617|gb|KNA11420.1|3.0e-30100.hypothetical protein SOVF_1353... [more]
gi|629123314|gb|KCW87739.1|1.2e-2998.5hypothetical protein EUGRSUZ_A... [more]
gi|297735234|emb|CBI17596.3|1.2e-2998.5unnamed protein product [Vitis... [more]
gi|661878012|emb|CDP18171.1|1.2e-2998.5unnamed protein product [Coffe... [more]
gi|359476741|ref|XP_003631881.1|1.2e-2998.5PREDICTED: 60S ribosomal prote... [more]
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BLAST of Spo12073.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RIP0_SPIOL2.1e-30100.Uncharacterized protein OS=Spi... [more]
A0A0J8CRR4_BETVU8.0e-3098.5Uncharacterized protein OS=Bet... [more]
D7SPL7_VITVI8.0e-3098.5Putative uncharacterized prote... [more]
A0A0A0KBT2_CUCSA8.0e-3098.5Uncharacterized protein OS=Cuc... [more]
A0A068U8M1_COFCA8.0e-3098.5Uncharacterized protein OS=Cof... [more]
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BLAST of Spo12073.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL38_ARATH2.7e-3195.660S ribosomal protein L38 OS=A... [more]
RL38_SOLLC4.4e-2991.360S ribosomal protein L38 OS=S... [more]
RL38_BRABE4.5e-2682.660S ribosomal protein L38 OS=B... [more]
RL38_MOUSE2.5e-2478.260S ribosomal protein L38 OS=M... [more]
RL38_RAT7.2e-2476.860S ribosomal protein L38 OS=R... [more]
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BLAST of Spo12073.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT2G43460.11.5e-3295.6Ribosomal L38e protein family[more]
AT3G59540.11.5e-3295.6Ribosomal L38e protein family[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002675Ribosomal protein L38ePRODOMPD010361coord: 1..69
score: 3.0
IPR002675Ribosomal protein L38ePANTHERPTHR1096560S RIBOSOMAL PROTEIN L38coord: 2..69
score: 2.1
IPR002675Ribosomal protein L38ePFAMPF01781Ribosomal_L38ecoord: 2..68
score: 7.2
NoneNo IPR availablePANTHERPTHR10965:SF3SUBFAMILY NOT NAMEDcoord: 2..69
score: 2.1

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006526 arginine biosynthetic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006425 glutaminyl-tRNA aminoacylation
biological_process GO:0006424 glutamyl-tRNA aminoacylation
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:0001510 RNA methylation
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0009553 embryo sac development
biological_process GO:0006397 mRNA processing
biological_process GO:0006606 protein import into nucleus
biological_process GO:0006364 rRNA processing
biological_process GO:0006096 glycolytic process
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0009651 response to salt stress
biological_process GO:0006342 chromatin silencing
biological_process GO:0015994 chlorophyll metabolic process
biological_process GO:0044205 'de novo' UMP biosynthetic process
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0051567 histone H3-K9 methylation
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006084 acetyl-CoA metabolic process
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0006306 DNA methylation
biological_process GO:0006270 DNA replication initiation
biological_process GO:0006268 DNA unwinding involved in DNA replication
biological_process GO:0009790 embryo development
biological_process GO:0051726 regulation of cell cycle
biological_process GO:0042127 regulation of cell proliferation
biological_process GO:0006275 regulation of DNA replication
biological_process GO:0010082 regulation of root meristem growth
biological_process GO:0007010 cytoskeleton organization
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0006334 nucleosome assembly
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0016567 protein ubiquitination
biological_process GO:0009909 regulation of flower development
biological_process GO:0050826 response to freezing
biological_process GO:0010162 seed dormancy process
biological_process GO:0009845 seed germination
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0009640 photomorphogenesis
biological_process GO:0009933 meristem structural organization
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0006412 translation
biological_process GO:0019915 lipid storage
biological_process GO:0048825 cotyledon development
biological_process GO:0051301 cell division
biological_process GO:0006414 translational elongation
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0010564 regulation of cell cycle process
cellular_component GO:0005840 ribosome
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005634 nucleus
cellular_component GO:0005951 carbamoyl-phosphate synthase complex
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016020 membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0005622 intracellular
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005730 nucleolus
cellular_component GO:0005829 cytosol
cellular_component GO:0009332 glutamate-tRNA ligase complex
cellular_component GO:0005657 replication fork
cellular_component GO:0042555 MCM complex
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0000786 nucleosome
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
molecular_function GO:0003723 RNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function GO:0043022 ribosome binding
molecular_function GO:0043023 ribosomal large subunit binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0016887 ATPase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0004819 glutamine-tRNA ligase activity
molecular_function GO:0004818 glutamate-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003678 DNA helicase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo175750.77Barchart | Table
Spo012360.75Barchart | Table
Spo021890.75Barchart | Table
Spo052100.74Barchart | Table
Spo197560.74Barchart | Table
Spo228090.74Barchart | Table
Spo155830.74Barchart | Table
Spo153630.73Barchart | Table
Spo100240.73Barchart | Table
Spo084510.73Barchart | Table
Spo123910.73Barchart | Table
Spo231930.73Barchart | Table
Spo259150.73Barchart | Table
Spo084410.73Barchart | Table
Spo203760.73Barchart | Table
Spo138560.73Barchart | Table
Spo037080.72Barchart | Table
Spo168710.72Barchart | Table
Spo032410.72Barchart | Table
Spo170170.72Barchart | Table
Spo027900.72Barchart | Table
Spo029120.71Barchart | Table
Spo025340.71Barchart | Table
Spo060940.71Barchart | Table
Spo172190.71Barchart | Table
Spo124580.71Barchart | Table
Spo259540.71Barchart | Table
Spo128740.70Barchart | Table
Spo226380.70Barchart | Table
Spo232140.70Barchart | Table
Spo040680.70Barchart | Table
Spo088160.70Barchart | Table
Spo118700.70Barchart | Table
Spo125980.70Barchart | Table
Spo234650.70Barchart | Table
Spo087610.69Barchart | Table
Spo128090.69Barchart | Table
Spo193450.69Barchart | Table
Spo123040.69Barchart | Table
Spo119430.69Barchart | Table
Spo055890.68Barchart | Table
Spo194010.68Barchart | Table
Spo197610.68Barchart | Table
Spo209410.68Barchart | Table
Spo223100.68Barchart | Table
Spo074420.68Barchart | Table
Spo256690.68Barchart | Table
Spo156040.68Barchart | Table
Spo157510.68Barchart | Table
Spo171240.68Barchart | Table
Spo192070.68Barchart | Table
Spo163530.67Barchart | Table
Spo021630.67Barchart | Table
Spo129110.67Barchart | Table
Spo098190.67Barchart | Table
Spo011710.67Barchart | Table
Spo199730.67Barchart | Table
Spo010860.67Barchart | Table
Spo010010.67Barchart | Table
Spo061680.67Barchart | Table
Spo181030.67Barchart | Table
Spo235130.67Barchart | Table
Spo136300.67Barchart | Table
Spo057830.67Barchart | Table
Spo007800.67Barchart | Table
Spo064550.66Barchart | Table
Spo036750.66Barchart | Table
Spo001700.66Barchart | Table
Spo085020.66Barchart | Table
Spo095630.66Barchart | Table
Spo127250.66Barchart | Table
Spo129940.66Barchart | Table
Spo166270.66Barchart | Table
Spo176170.66Barchart | Table
Spo183930.66Barchart | Table
Spo186200.66Barchart | Table
Spo186470.66Barchart | Table
Spo201610.66Barchart | Table
Spo272230.66Barchart | Table
Spo137310.65Barchart | Table
Spo251760.65Barchart | Table
Spo256150.65Barchart | Table
Spo137230.65Barchart | Table
Spo130480.65Barchart | Table
Spo123110.65Barchart | Table
Spo167100.65Barchart | Table