Spo11995 (gene)

Overview
NameSpo11995
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionGibberellin-regulated protein 6 (GAST1 protein homolog 6) (Precursor)
Locationchr4 : 7658586 .. 7660753 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATGACAATTTGGTCATATGTCACTTTCACAAATTTATAAAGTTTGCAAACAAATTGCCTCTTGAGTCATGAACTAGTCCCTATAAATACCATCTTAATTCACTAACACTTACATCCAAAAACACACACATTCTTCTCTATTTCCCCTGCAAAATTTGTTTCCTTAAGAAAAATGGCAATGTCAAGGAACCTTACTCTTCTGTTTTATGTCACTTTGTTGCTTATTGTTTTGACAACAAATCAGGTATAGTATGCACTACTCTCACTACAAGATCAACGATCGCCAGTACGTATCTGACTGGCGGTCGTTGATCTCGTTGTTTATTTTATTTTATTTTATTACATTCTTCTTATATATGCGTATATTAAGCTTGGGTGTGTGTTTTTTTAATCTTTTACAGGCTGAGAGTCTTTCTTCTCAATTATCTCAACCACAAAGCCAAAGTGGTCACTCAATGGTAAGTGCTTGCAACACTAACAAGTAACAAACCATCATATTAGCAAGTTGAAGGAAATTGTGGTGTTTTTCTCTTAAATTAGAAAAGTTTTACAATTATTAGGATTAATGTTTCGGGGTTATACGCTTATACCCAATATCTGAGATCGAATTATATCTACTCGTACAATATTATTTTCTCAACTCTTTCTACACACAAAAAGAAAGATAGACATTCTTAATTTTAAAAAGTGGTGAATTTTTAATTTAAATGGACGTTTCTTTTGACAATAGAAATTTCATTTTTTTAAACTAAATTTATATATCTTTGAACTTTTATGACACCAAGTGAGGAATAATCTTTACATTTCCAAACAAAATAAAATAAAGTTACATAGAAGTATGCATTCATTGGTTGGAAATTGGAATCCATTGCCAAAATATGAATATTACCCAATTCTAAAAATGGCAAAACTAACTCACTTTACCCTTTTGTTTTTATCTATATGCAGTATGGTGCGACACAAGGAAGCCTCAATCCACAAGGTAGTTTTTCCATTAAATCTTTGTGACACTAACTTTTAGCATTAACCATTACATTCACTAATTTTATGTTAAATGATCATTACATTCAATAATTTTGTGTAAAATGAGAAATGACTAATTTCTTTTTCTAAAGGGACATTATCTAGATGAATTAGATCATGATTCCGGCCAACTCTATATAAATAACATGGATCCGTCACTGCATTACATTTAAGCATCTAATTAACTCATAAATCAACTTGTGATTCCGTCTCACTCTAAATAAATACAATGGATTCGACACTGCATATACATTTAAAGCATTTAACTAATTCATATTAGCATCCATTGTCCAATATTACTAAATGTGGTTATTGATTACAAACATTAATGAGATTGTTGTAGTGTAATTGATGTTGATGAATGAGAGCATGCTTATTGCTAAATGGACATTATCTAGATTAGCTAGGGTATGATTCCAAGCCCACTATATGTAAACATCATGGATCCGTCACTGATATACACTTTAACTAATATTGTTATATCAAAAAATTGAACTTGCTTCAGTGATTAACATATGTAACTTTAAAGGTGGAATAAATGTAATTGGATATCAGGGGTTCAAAGCCCATCAATATCATTCAGTTCCTCGAAAAATAAAAATAAAAAACCTATATTGTTACATCGTGATTTGTCTTTATCATATCCGTATCCGAATCCATTGTCCAATACTACTATATGAGGTTAATTATTGATTACAAACATTAACGGGGATCATTGTTGTGTATTTGATGTTGATGAACGAGAACAGCCTGTGGACCAAGGTGCACAATGAGATGCTCAGCCACTGCATACAAGAAACCTTGCTTGTTCTTCTGCAATAAATGTTGTGCTAAGTGCTTGTGTGTCCCACCTGGTACCTTTGGCAACAAGCAACTCTGCCCTTGCTACAACAACTGGAAGACCAAGAGAGGAGGCCCTAAATGCCCTTAATTACTAGGACTTATTATTTTTCTAAGTACCTAAGTTCTACTTCTTTACCCCAACTACCCTTATATTTATTGGTCCTACTCAAGCCTGTGCGAGATTTCAATCTGATAGAACGTCTTCTCTTTACCTGCTTGAAAAGAACTCCGATAATAGCACTAGTAGTAATTCCTTCGACTCTAATTACATGTTACTACTCCATTTATATGCCCGCTTTTG

mRNA sequence

AAATGACAATTTGGTCATATGTCACTTTCACAAATTTATAAAGTTTGCAAACAAATTGCCTCTTGAGTCATGAACTAGTCCCTATAAATACCATCTTAATTCACTAACACTTACATCCAAAAACACACACATTCTTCTCTATTTCCCCTGCAAAATTTGTTTCCTTAAGAAAAATGGCAATGTCAAGGAACCTTACTCTTCTGTTTTATGTCACTTTGTTGCTTATTGTTTTGACAACAAATCAGGCTGAGAGTCTTTCTTCTCAATTATCTCAACCACAAAGCCAAAGTGGTCACTCAATGTATGGTGCGACACAAGGAAGCCTCAATCCACAAGCCTGTGGACCAAGGTGCACAATGAGATGCTCAGCCACTGCATACAAGAAACCTTGCTTGTTCTTCTGCAATAAATGTTGTGCTAAGTGCTTGTGTGTCCCACCTGGTACCTTTGGCAACAAGCAACTCTGCCCTTGCTACAACAACTGGAAGACCAAGAGAGGAGGCCCTAAATGCCCTTAATTACTAGGACTTATTATTTTTCTAAGTACCTAAGTTCTACTTCTTTACCCCAACTACCCTTATATTTATTGGTCCTACTCAAGCCTGTGCGAGATTTCAATCTGATAGAACGTCTTCTCTTTACCTGCTTGAAAAGAACTCCGATAATAGCACTAGTAGTAATTCCTTCGACTCTAATTACATGTTACTACTCCATTTATATGCCCGCTTTTG

Coding sequence (CDS)

ATGGCAATGTCAAGGAACCTTACTCTTCTGTTTTATGTCACTTTGTTGCTTATTGTTTTGACAACAAATCAGGCTGAGAGTCTTTCTTCTCAATTATCTCAACCACAAAGCCAAAGTGGTCACTCAATGTATGGTGCGACACAAGGAAGCCTCAATCCACAAGCCTGTGGACCAAGGTGCACAATGAGATGCTCAGCCACTGCATACAAGAAACCTTGCTTGTTCTTCTGCAATAAATGTTGTGCTAAGTGCTTGTGTGTCCCACCTGGTACCTTTGGCAACAAGCAACTCTGCCCTTGCTACAACAACTGGAAGACCAAGAGAGGAGGCCCTAAATGCCCTTAA

Protein sequence

MAMSRNLTLLFYVTLLLIVLTTNQAESLSSQLSQPQSQSGHSMYGATQGSLNPQACGPRCTMRCSATAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11995.1Spo11995.1mRNA


Homology
[Close]
BLAST of Spo11995.1 vs. NCBI nr
Match: gi|902232404|gb|KNA22599.1| (hypothetical protein SOVF_030910 [Spinacia oleracea])

HSP 1 Score: 238.4 bits (607), Expect = 6.100e-60
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

		  

Query: 1   MAMSRNLTLLFYVTLLLIVLTTNQAESLSSQLSQPQSQSGHSMYGATQGSLNPQACGPRC 60
           MAMSRNLTLLFYVTLLLIVLTTNQAESLSSQLSQPQSQSGHSMYGATQGSLNPQACGPRC
Sbjct: 1   MAMSRNLTLLFYVTLLLIVLTTNQAESLSSQLSQPQSQSGHSMYGATQGSLNPQACGPRC 60

Query: 61  TMRCSATAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
           TMRCSATAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP
Sbjct: 61  TMRCSATAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 114
[Close]
BLAST of Spo11995.1 vs. NCBI nr
Match: gi|731325840|ref|XP_010673717.1| (PREDICTED: protein GAST1-like isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 203.0 bits (515), Expect = 2.800e-49
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 1 

		  

Query: 1   MAMSRNLTLLFYVTLLLIVLTTNQAESLSSQLSQPQSQSGHSMYGATQGSLNPQACGPRC 60
           MAMSRN++LL YVTL+LIVLT NQAES   Q SQPQ QSGHSM GA+QGSL+PQ CGPRC
Sbjct: 1   MAMSRNISLLLYVTLMLIVLTANQAES---QSSQPQIQSGHSMQGASQGSLHPQECGPRC 60

Query: 61  TMRCSATAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
           TMRCSAT YKKPCLFFC KCCAKCLCVPPGT+GNKQLCPCYNNWKTKRGGPKCP
Sbjct: 61  TMRCSATQYKKPCLFFCQKCCAKCLCVPPGTYGNKQLCPCYNNWKTKRGGPKCP 111
[Close]
BLAST of Spo11995.1 vs. NCBI nr
Match: gi|731325842|ref|XP_010673718.1| (PREDICTED: protein GAST1-like isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 198.7 bits (504), Expect = 5.300e-48
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 1 

		  

Query: 1   MAMSRNLTLLFYVTLLLIVLTTNQAESLSSQLSQPQSQSGHSMYGATQGSLNPQACGPRC 60
           MAMSRN++LL YVTL+LIVLT NQAES   Q SQPQ QSGHSM GA+QGSL+PQ CGPRC
Sbjct: 1   MAMSRNISLLLYVTLMLIVLTANQAES---QSSQPQIQSGHSM-GASQGSLHPQECGPRC 60

Query: 61  TMRCSATAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
           TMRCSAT YKKPCLFFC KCCAKCLCVPPGT+GNKQLCPCYNNWKTKRGGPKCP
Sbjct: 61  TMRCSATQYKKPCLFFCQKCCAKCLCVPPGTYGNKQLCPCYNNWKTKRGGPKCP 110
[Close]
BLAST of Spo11995.1 vs. NCBI nr
Match: gi|743904029|ref|XP_011045379.1| (PREDICTED: protein GAST1-like [Populus euphratica])

HSP 1 Score: 169.1 bits (427), Expect = 4.500e-39
Identity = 78/109 (71.56%), Postives = 85/109 (77.98%), Query Frame = 1 

		  

Query: 6   NLTLLFYVTLLLIVLTTNQAESLSSQLSQPQSQSGHSMYGATQGSLNPQACGPRCTMRCS 65
           ++ +L    L+L +L  NQA       SQPQ Q  H+MYGATQGSL PQ C PRCT RCS
Sbjct: 5   SIAILLCSLLVLFLLGQNQALKTPISASQPQRQGNHAMYGATQGSLRPQECAPRCTTRCS 64

Query: 66  ATAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
           ATAYKKPCLFFC KCCAKCLCVPPGT+GNKQ CPCYNNWKTKRGGPKCP
Sbjct: 65  ATAYKKPCLFFCQKCCAKCLCVPPGTYGNKQSCPCYNNWKTKRGGPKCP 113
[Close]
BLAST of Spo11995.1 vs. NCBI nr
Match: gi|802765576|ref|XP_012090061.1| (PREDICTED: protein GAST1-like [Jatropha curcas])

HSP 1 Score: 167.9 bits (424), Expect = 1.000e-38
Identity = 77/115 (66.96%), Postives = 93/115 (80.87%), Query Frame = 1 

		  

Query: 1   MAMSRNLTLLFYVTLLLIVLTTNQAESLSSQL-SQPQSQSGHSMYGATQGSLNPQACGPR 60
           M  + ++ +L +  ++L++L  NQA + +  L SQPQ +  ++MYGATQGSL PQ CGPR
Sbjct: 1   MGRAISIVMLCFALIMLVLLEENQAFNTAGILASQPQGKGKNAMYGATQGSLRPQECGPR 60

Query: 61  CTMRCSATAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
           CT RCSATAYKKPC+FFC KCCAKCLCVPPGT+GNKQ CPCYNNWKTKRGGPKCP
Sbjct: 61  CTTRCSATAYKKPCMFFCQKCCAKCLCVPPGTYGNKQYCPCYNNWKTKRGGPKCP 115
[Close]
BLAST of Spo11995.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RUL9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_030910 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 4.200e-60
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

		  

Query: 1   MAMSRNLTLLFYVTLLLIVLTTNQAESLSSQLSQPQSQSGHSMYGATQGSLNPQACGPRC 60
           MAMSRNLTLLFYVTLLLIVLTTNQAESLSSQLSQPQSQSGHSMYGATQGSLNPQACGPRC
Sbjct: 1   MAMSRNLTLLFYVTLLLIVLTTNQAESLSSQLSQPQSQSGHSMYGATQGSLNPQACGPRC 60

Query: 61  TMRCSATAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
           TMRCSATAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP
Sbjct: 61  TMRCSATAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 114
[Close]
BLAST of Spo11995.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CM35_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g073420 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.000e-49
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 1 

		  

Query: 1   MAMSRNLTLLFYVTLLLIVLTTNQAESLSSQLSQPQSQSGHSMYGATQGSLNPQACGPRC 60
           MAMSRN++LL YVTL+LIVLT NQAES   Q SQPQ QSGHSM GA+QGSL+PQ CGPRC
Sbjct: 1   MAMSRNISLLLYVTLMLIVLTANQAES---QSSQPQIQSGHSMQGASQGSLHPQECGPRC 60

Query: 61  TMRCSATAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
           TMRCSAT YKKPCLFFC KCCAKCLCVPPGT+GNKQLCPCYNNWKTKRGGPKCP
Sbjct: 61  TMRCSATQYKKPCLFFCQKCCAKCLCVPPGTYGNKQLCPCYNNWKTKRGGPKCP 111
[Close]
BLAST of Spo11995.1 vs. UniProtKB/TrEMBL
Match: A0A067JQ68_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25966 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 7.000e-39
Identity = 77/115 (66.96%), Postives = 93/115 (80.87%), Query Frame = 1 

		  

Query: 1   MAMSRNLTLLFYVTLLLIVLTTNQAESLSSQL-SQPQSQSGHSMYGATQGSLNPQACGPR 60
           M  + ++ +L +  ++L++L  NQA + +  L SQPQ +  ++MYGATQGSL PQ CGPR
Sbjct: 1   MGRAISIVMLCFALIMLVLLEENQAFNTAGILASQPQGKGKNAMYGATQGSLRPQECGPR 60

Query: 61  CTMRCSATAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
           CT RCSATAYKKPC+FFC KCCAKCLCVPPGT+GNKQ CPCYNNWKTKRGGPKCP
Sbjct: 61  CTTRCSATAYKKPCMFFCQKCCAKCLCVPPGTYGNKQYCPCYNNWKTKRGGPKCP 115
[Close]
BLAST of Spo11995.1 vs. UniProtKB/TrEMBL
Match: B9GIF4_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s26100g PE=4 SV=2)

HSP 1 Score: 166.4 bits (420), Expect = 2.000e-38
Identity = 79/113 (69.91%), Postives = 87/113 (76.99%), Query Frame = 1 

		  

Query: 3   MSRNLTLLFYVTLLLIVLT-TNQAESLSSQLSQPQSQSGHSMYGATQGSLNPQACGPRCT 62
           M ++   +F  +LL++VL   NQA       SQ Q Q  H+MYGATQGSL PQ C PRCT
Sbjct: 24  MGKSSIAIFLCSLLVLVLLGQNQALKTPISASQTQRQGNHAMYGATQGSLRPQECAPRCT 83

Query: 63  MRCSATAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
            RCSATAYKKPCLFFC KCCAKCLCVPPGT+GNKQ CPCYNNWKTKRGGPKCP
Sbjct: 84  TRCSATAYKKPCLFFCQKCCAKCLCVPPGTYGNKQSCPCYNNWKTKRGGPKCP 136
[Close]
BLAST of Spo11995.1 vs. UniProtKB/TrEMBL
Match: A0A0B0NSV5_GOSAR (Protein GAST1 OS=Gossypium arboreum GN=F383_09562 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.300e-37
Identity = 78/112 (69.64%), Postives = 87/112 (77.68%), Query Frame = 1 

		  

Query: 3   MSRNLTLLFYVTLLLIVLTTNQAESLSSQLSQPQSQSGHSMYGATQGSLNPQACGPRCTM 62
           M+++L ++    LL+IVL      S  SQ  Q Q   G+ MYGATQGSL PQ CGPRCT 
Sbjct: 1   MAKSLVIVMLCFLLVIVLLGEIQASSPSQ-KQRQGNHGNGMYGATQGSLRPQECGPRCTQ 60

Query: 63  RCSATAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
           RCSATAYKKPC+FFC KCCAKCLCVPPGT+GNKQ CPCYNNWKTKRGGPKCP
Sbjct: 61  RCSATAYKKPCMFFCQKCCAKCLCVPPGTYGNKQSCPCYNNWKTKRGGPKCP 111
[Close]
BLAST of Spo11995.1 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.700e-34
Identity = 66/113 (58.41%), Postives = 84/113 (74.34%), Query Frame = 1 

		  

Query: 3   MSRNLTLLFYVTLLLIVLTTNQAESLSSQLS-QPQSQSGHSMYGATQGSLNPQACGPRCT 62
           M+  ++++ +V LL++ LT NQ    +     Q Q Q  + +YG ++G L+PQ C P+CT
Sbjct: 1   MAGKMSIVLFV-LLVVFLTQNQVSRANIMRDEQQQQQRNNQLYGVSEGRLHPQDCQPKCT 60

Query: 63  MRCSATAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
            RCS T+YKKPC+FFC KCCAKCLCVP GT+GNKQ CPCYNNWKTKRGGPKCP
Sbjct: 61  YRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112
[Close]
BLAST of Spo11995.1 vs. ExPASy Swiss-Prot
Match: GASAD_ARATH (Gibberellin-regulated protein 13 OS=Arabidopsis thaliana GN=GASA13 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.600e-28
Identity = 51/59 (86.44%), Postives = 53/59 (89.83%), Query Frame = 1 

		  

Query: 56  CGPRCTMRCSATAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
           CGPRC  RCS T YKKPCLFFCNKCC KCLCVPPGT+GNKQ+CPCYNNWKTK GGPKCP
Sbjct: 45  CGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKCP 103
[Close]
BLAST of Spo11995.1 vs. ExPASy Swiss-Prot
Match: GASA5_ARATH (Gibberellin-regulated protein 5 OS=Arabidopsis thaliana GN=GASA5 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.300e-27
Identity = 57/105 (54.29%), Postives = 71/105 (67.62%), Query Frame = 1 

		  

Query: 10  LFYVTLLLIVLTTNQAESLSSQLSQPQSQSGHSMYGATQGSLNPQACGPRCTMRCSATAY 69
           LF++TLL ++  +N  ++         ++ G        G L PQ C  +C+ RCSAT++
Sbjct: 10  LFFLTLLFLLSVSNLVQA---------ARGG--------GKLKPQQCNSKCSFRCSATSH 69

Query: 70  KKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
           KKPC+FFC KCC KCLCVPPGTFGNKQ CPCYNNWKTK G PKCP
Sbjct: 70  KKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKEGRPKCP 97
[Close]
BLAST of Spo11995.1 vs. ExPASy Swiss-Prot
Match: GASA6_ARATH (Gibberellin-regulated protein 6 OS=Arabidopsis thaliana GN=GASA6 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.000e-27
Identity = 60/101 (59.41%), Postives = 71/101 (70.30%), Query Frame = 1 

		  

Query: 15  LLLIVLTTNQAESLSSQLS-QPQSQSGHSMYGATQGSLNPQACGPRCTMRCSATAYKKPC 74
           LLL +L T    ++S +    P+S      YG   GSL    CG +CT RCS T Y KPC
Sbjct: 9   LLLTILFTFVCLTMSKEAEYHPES------YGP--GSLKSYQCGGQCTRRCSNTKYHKPC 68

Query: 75  LFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
           +FFC KCCAKCLCVPPGT+GNKQ+CPCYNNWKT++GGPKCP
Sbjct: 69  MFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101
[Close]
BLAST of Spo11995.1 vs. ExPASy Swiss-Prot
Match: GASAC_ARATH (Gibberellin-regulated protein 12 OS=Arabidopsis thaliana GN=GASA12 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 9.800e-26
Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = 1 

		  

Query: 7   LTLLFYVTLLLIVLTTNQAESLSSQLSQPQSQSGHSMYGATQGSLNPQACGPRCTMRCSA 66
           L ++F ++ LL     +  + L SQ   P            +GSL P+ C   C  RCSA
Sbjct: 4   LIVVFVISSLLFATQFSNGDELESQAQAPAIHKNGG-----EGSLKPEECPKACEYRCSA 63

Query: 67  TAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
           T+++KPCLFFCNKCC KCLCVP GT+G+K+ CPCYNNW TK GGPKCP
Sbjct: 64  TSHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTTKEGGPKCP 106
[Close]
BLAST of Spo11995.1 vs. TAIR (Arabidopsis)
Match: AT3G10185.1 (Gibberellin-regulated family protein)

HSP 1 Score: 126.7 bits (317), Expect = 9.100e-30
Identity = 51/59 (86.44%), Postives = 53/59 (89.83%), Query Frame = 1 

		  

Query: 56  CGPRCTMRCSATAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
           CGPRC  RCS T YKKPCLFFCNKCC KCLCVPPGT+GNKQ+CPCYNNWKTK GGPKCP
Sbjct: 45  CGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKCP 103
[Close]
BLAST of Spo11995.1 vs. TAIR (Arabidopsis)
Match: AT3G02885.1 (GAST1 protein homolog 5)

HSP 1 Score: 122.9 bits (307), Expect = 1.300e-28
Identity = 57/105 (54.29%), Postives = 71/105 (67.62%), Query Frame = 1 

		  

Query: 10  LFYVTLLLIVLTTNQAESLSSQLSQPQSQSGHSMYGATQGSLNPQACGPRCTMRCSATAY 69
           LF++TLL ++  +N  ++         ++ G        G L PQ C  +C+ RCSAT++
Sbjct: 10  LFFLTLLFLLSVSNLVQA---------ARGG--------GKLKPQQCNSKCSFRCSATSH 69

Query: 70  KKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
           KKPC+FFC KCC KCLCVPPGTFGNKQ CPCYNNWKTK G PKCP
Sbjct: 70  KKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKEGRPKCP 97
[Close]
BLAST of Spo11995.1 vs. TAIR (Arabidopsis)
Match: AT1G74670.1 (Gibberellin-regulated family protein)

HSP 1 Score: 122.5 bits (306), Expect = 1.700e-28
Identity = 60/101 (59.41%), Postives = 71/101 (70.30%), Query Frame = 1 

		  

Query: 15  LLLIVLTTNQAESLSSQLS-QPQSQSGHSMYGATQGSLNPQACGPRCTMRCSATAYKKPC 74
           LLL +L T    ++S +    P+S      YG   GSL    CG +CT RCS T Y KPC
Sbjct: 9   LLLTILFTFVCLTMSKEAEYHPES------YGP--GSLKSYQCGGQCTRRCSNTKYHKPC 68

Query: 75  LFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
           +FFC KCCAKCLCVPPGT+GNKQ+CPCYNNWKT++GGPKCP
Sbjct: 69  MFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101
[Close]
BLAST of Spo11995.1 vs. TAIR (Arabidopsis)
Match: AT2G30810.1 (Gibberellin-regulated family protein)

HSP 1 Score: 117.5 bits (293), Expect = 5.500e-27
Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = 1 

		  

Query: 7   LTLLFYVTLLLIVLTTNQAESLSSQLSQPQSQSGHSMYGATQGSLNPQACGPRCTMRCSA 66
           L ++F ++ LL     +  + L SQ   P            +GSL P+ C   C  RCSA
Sbjct: 4   LIVVFVISSLLFATQFSNGDELESQAQAPAIHKNGG-----EGSLKPEECPKACEYRCSA 63

Query: 67  TAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
           T+++KPCLFFCNKCC KCLCVP GT+G+K+ CPCYNNW TK GGPKCP
Sbjct: 64  TSHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTTKEGGPKCP 106
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BLAST of Spo11995.1 vs. TAIR (Arabidopsis)
Match: AT5G15230.1 (GAST1 protein homolog 4)

HSP 1 Score: 104.8 bits (260), Expect = 3.700e-23
Identity = 54/113 (47.79%), Postives = 67/113 (59.29%), Query Frame = 1 

		  

Query: 3   MSRNLTLLFYVTLL-LIVLTTNQAESLSSQLSQPQSQSGHSMYGATQGSLNPQACGPRCT 62
           M+++   +F +TL+ L +L T    S  S +   Q + G        GSL    C   C 
Sbjct: 1   MAKSYGAIFLLTLIVLFMLQTMVMASSGSNVKWSQKRYG-------PGSLKRTQCPSECD 60

Query: 63  MRCSATAYKKPCLFFCNKCCAKCLCVPPGTFGNKQLCPCYNNWKTKRGGPKCP 115
            RC  T Y K C+ FCNKCC KCLCVPPG +GNKQ+C CYNNWKT+ GGPKCP
Sbjct: 61  RRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106
The following BLAST results are available for this feature:
BLAST of Spo11995.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902232404|gb|KNA22599.1|6.1e-60100.hypothetical protein SOVF_0309... [more]
gi|731325840|ref|XP_010673717.1|2.8e-4985.0PREDICTED: protein GAST1-like ... [more]
gi|731325842|ref|XP_010673718.1|5.3e-4885.0PREDICTED: protein GAST1-like ... [more]
gi|743904029|ref|XP_011045379.1|4.5e-3971.5PREDICTED: protein GAST1-like ... [more]
gi|802765576|ref|XP_012090061.1|1.0e-3866.9PREDICTED: protein GAST1-like ... [more]
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BLAST of Spo11995.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RUL9_SPIOL4.2e-60100.Uncharacterized protein OS=Spi... [more]
A0A0J8CM35_BETVU2.0e-4985.0Uncharacterized protein OS=Bet... [more]
A0A067JQ68_JATCU7.0e-3966.9Uncharacterized protein OS=Jat... [more]
B9GIF4_POPTR2.0e-3869.9Uncharacterized protein (Fragm... [more]
A0A0B0NSV5_GOSAR1.3e-3769.6Protein GAST1 OS=Gossypium arb... [more]
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BLAST of Spo11995.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GAST1_SOLLC9.7e-3458.4Protein GAST1 OS=Solanum lycop... [more]
GASAD_ARATH1.6e-2886.4Gibberellin-regulated protein ... [more]
GASA5_ARATH2.3e-2754.2Gibberellin-regulated protein ... [more]
GASA6_ARATH3.0e-2759.4Gibberellin-regulated protein ... [more]
GASAC_ARATH9.8e-2650.9Gibberellin-regulated protein ... [more]
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BLAST of Spo11995.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT3G10185.19.1e-3086.4Gibberellin-regulated family p... [more]
AT3G02885.11.3e-2854.2GAST1 protein homolog 5[more]
AT1G74670.11.7e-2859.4Gibberellin-regulated family p... [more]
AT2G30810.15.5e-2750.9Gibberellin-regulated family p... [more]
AT5G15230.13.7e-2347.7GAST1 protein homolog 4[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003854Gibberellin regulated proteinPFAMPF02704GASAcoord: 56..114
score: 3.7
NoneNo IPR availablePANTHERPTHR23201EXTENSIN, PROLINE-RICH PROTEINcoord: 3..114
score: 1.2
NoneNo IPR availablePANTHERPTHR23201:SF8SUBFAMILY NOT NAMEDcoord: 3..114
score: 1.2

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001510 RNA methylation
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0006412 translation
biological_process GO:0010015 root morphogenesis
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0008361 regulation of cell size
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0009832 plant-type cell wall biogenesis
biological_process GO:0007389 pattern specification process
biological_process GO:0009926 auxin polar transport
biological_process GO:0048653 anther development
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0000023 maltose metabolic process
biological_process GO:0006508 proteolysis
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
cellular_component GO:0005840 ribosome
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009840 chloroplastic endopeptidase Clp complex
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005524 ATP binding
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0050897 cobalt ion binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005515 protein binding
RNA-Seq Expression