Spo11952 (gene)

Overview
NameSpo11952
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPolyubiquitin 4 (Ubiquitin) (Precursor)
Locationchr4 : 8289773 .. 8290249 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGATCTTCGTCAAAACCCTAACCGGAAAAACCATAACCCTAGAAGTAGAATCCTCCGACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATCCCACCGGACCAACAACGCCTCATCTTCGCCGGAAAACAGTTGGAAGATGGAAGAACACTTGCCGACTACAACATCCAGAAGGAATCTACTCTCCACTTGGTGCTTCGTCTTCGTGGTGGGACCATGATCAAGGTCAAAACCCTAACTGGAAAGGAAATCGAAATCGATATTGAGCCGAATGATACGATTGATCGTATTAAGGAGCGTGTGGAGGAGAAAGAGGGGATTCCTCCTGTTCAACAGAGATTGATTTATGCTGGAAAGCAGCTTGCTGATGATAAGACTGCTAAGGATTATAATATTGAGGGGGGTTCTGTTCTTCATCTTGTTCTTGCTCTTAGAGGTGGTGCTTGTTCTGCTTCTGCTTAA

mRNA sequence

ATGCAGATCTTCGTCAAAACCCTAACCGGAAAAACCATAACCCTAGAAGTAGAATCCTCCGACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATCCCACCGGACCAACAACGCCTCATCTTCGCCGGAAAACAGTTGGAAGATGGAAGAACACTTGCCGACTACAACATCCAGAAGGAATCTACTCTCCACTTGGTGCTTCGTCTTCGTGGTGGGACCATGATCAAGGTCAAAACCCTAACTGGAAAGGAAATCGAAATCGATATTGAGCCGAATGATACGATTGATCGTATTAAGGAGCGTGTGGAGGAGAAAGAGGGGATTCCTCCTGTTCAACAGAGATTGATTTATGCTGGAAAGCAGCTTGCTGATGATAAGACTGCTAAGGATTATAATATTGAGGGGGGTTCTGTTCTTCATCTTGTTCTTGCTCTTAGAGGTGGTGCTTGTTCTGCTTCTGCTTAA

Coding sequence (CDS)

ATGCAGATCTTCGTCAAAACCCTAACCGGAAAAACCATAACCCTAGAAGTAGAATCCTCCGACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATCCCACCGGACCAACAACGCCTCATCTTCGCCGGAAAACAGTTGGAAGATGGAAGAACACTTGCCGACTACAACATCCAGAAGGAATCTACTCTCCACTTGGTGCTTCGTCTTCGTGGTGGGACCATGATCAAGGTCAAAACCCTAACTGGAAAGGAAATCGAAATCGATATTGAGCCGAATGATACGATTGATCGTATTAAGGAGCGTGTGGAGGAGAAAGAGGGGATTCCTCCTGTTCAACAGAGATTGATTTATGCTGGAAAGCAGCTTGCTGATGATAAGACTGCTAAGGATTATAATATTGAGGGGGGTTCTGTTCTTCATCTTGTTCTTGCTCTTAGAGGTGGTGCTTGTTCTGCTTCTGCTTAA

Protein sequence

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGACSASA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11952.1Spo11952.1mRNA


Homology
[Close]
BLAST of Spo11952.1 vs. NCBI nr
Match: gi|902236340|gb|KNA24339.1| (hypothetical protein SOVF_016390 [Spinacia oleracea])

HSP 1 Score: 305.8 bits (782), Expect = 4.300e-80
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGACSASA 159
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGACSASA
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGACSASA 158
[Close]
BLAST of Spo11952.1 vs. NCBI nr
Match: gi|747040393|ref|XP_011079099.1| (PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Sesamum indicum])

HSP 1 Score: 297.0 bits (759), Expect = 2.000e-77
Identity = 154/158 (97.47%), Postives = 155/158 (98.10%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGACSASA 159
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG+ SASA
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGSLSASA 158
[Close]
BLAST of Spo11952.1 vs. NCBI nr
Match: gi|923814276|ref|XP_013691855.1| (PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Brassica napus])

HSP 1 Score: 296.6 bits (758), Expect = 2.600e-77
Identity = 153/158 (96.84%), Postives = 153/158 (96.84%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGACSASA 159
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG C   A
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGCGVLA 158
[Close]
BLAST of Spo11952.1 vs. NCBI nr
Match: gi|685305814|ref|XP_009143639.1| (PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Brassica rapa])

HSP 1 Score: 296.2 bits (757), Expect = 3.400e-77
Identity = 152/154 (98.70%), Postives = 152/154 (98.70%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGAC 155
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG C
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGC 154
[Close]
BLAST of Spo11952.1 vs. NCBI nr
Match: gi|922474131|ref|XP_013635951.1| (PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Brassica oleracea var. oleracea])

HSP 1 Score: 296.2 bits (757), Expect = 3.400e-77
Identity = 153/158 (96.84%), Postives = 153/158 (96.84%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGACSASA 159
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG C   A
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGCCVLA 158
[Close]
BLAST of Spo11952.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RZI4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_016390 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 3.000e-80
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGACSASA 159
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGACSASA
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGACSASA 158
[Close]
BLAST of Spo11952.1 vs. UniProtKB/TrEMBL
Match: A0A0D3BRQ7_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.400e-77
Identity = 153/158 (96.84%), Postives = 153/158 (96.84%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGACSASA 159
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG C   A
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGCCVLA 158
[Close]
BLAST of Spo11952.1 vs. UniProtKB/TrEMBL
Match: A0A078GZ20_BRANA (BnaA05g08370D protein OS=Brassica napus GN=BnaA05g08370D PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.400e-77
Identity = 152/154 (98.70%), Postives = 152/154 (98.70%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGAC 155
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG C
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGC 154
[Close]
BLAST of Spo11952.1 vs. UniProtKB/TrEMBL
Match: A0A078D4X0_BRANA (BnaC04g09440D protein OS=Brassica napus GN=BnaC04g09440D PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.400e-77
Identity = 152/154 (98.70%), Postives = 152/154 (98.70%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGAC 155
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG C
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGC 154
[Close]
BLAST of Spo11952.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBV6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_084460 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.100e-77
Identity = 153/156 (98.08%), Postives = 154/156 (98.72%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGACSA 157
           YAGKQLADDKTAK+YNIEGGSVLHLVLALRGGA SA
Sbjct: 121 YAGKQLADDKTAKEYNIEGGSVLHLVLALRGGAASA 156
[Close]
BLAST of Spo11952.1 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=2 SV=2)

HSP 1 Score: 293.1 bits (749), Expect = 1.800e-78
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152
[Close]
BLAST of Spo11952.1 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=2 SV=2)

HSP 1 Score: 293.1 bits (749), Expect = 1.800e-78
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152
[Close]
BLAST of Spo11952.1 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=3)

HSP 1 Score: 293.1 bits (749), Expect = 1.800e-78
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152
[Close]
BLAST of Spo11952.1 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=2)

HSP 1 Score: 292.7 bits (748), Expect = 2.300e-78
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152
[Close]
BLAST of Spo11952.1 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=1 SV=3)

HSP 1 Score: 290.0 bits (741), Expect = 1.500e-77
Identity = 150/152 (98.68%), Postives = 150/152 (98.68%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDY IEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 152
[Close]
BLAST of Spo11952.1 vs. TAIR (Arabidopsis)
Match: AT1G31340.1 (related to ubiquitin 1)

HSP 1 Score: 293.1 bits (749), Expect = 1.000e-79
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152
[Close]
BLAST of Spo11952.1 vs. TAIR (Arabidopsis)
Match: AT2G35635.1 (ubiquitin 7)

HSP 1 Score: 290.0 bits (741), Expect = 8.600e-79
Identity = 150/152 (98.68%), Postives = 150/152 (98.68%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP DTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDY IEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 152
[Close]
BLAST of Spo11952.1 vs. TAIR (Arabidopsis)
Match: AT5G03240.1 (polyubiquitin 3)

HSP 1 Score: 242.7 bits (618), Expect = 1.600e-64
Identity = 123/153 (80.39%), Postives = 136/153 (88.89%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGA 154
           +AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGS 305
[Close]
BLAST of Spo11952.1 vs. TAIR (Arabidopsis)
Match: AT5G20620.1 (ubiquitin 4)

HSP 1 Score: 242.7 bits (618), Expect = 1.600e-64
Identity = 123/153 (80.39%), Postives = 136/153 (88.89%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGA 154
           +AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGS 381
[Close]
BLAST of Spo11952.1 vs. TAIR (Arabidopsis)
Match: AT4G05050.1 (ubiquitin 11)

HSP 1 Score: 242.3 bits (617), Expect = 2.100e-64
Identity = 123/152 (80.92%), Postives = 135/152 (88.82%), Query Frame = 1 

		  

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPNDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           +AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
The following BLAST results are available for this feature:
BLAST of Spo11952.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902236340|gb|KNA24339.1|4.3e-80100.hypothetical protein SOVF_0163... [more]
gi|747040393|ref|XP_011079099.1|2.0e-7797.4PREDICTED: ubiquitin-NEDD8-lik... [more]
gi|923814276|ref|XP_013691855.1|2.6e-7796.8PREDICTED: ubiquitin-NEDD8-lik... [more]
gi|685305814|ref|XP_009143639.1|3.4e-7798.7PREDICTED: ubiquitin-NEDD8-lik... [more]
gi|922474131|ref|XP_013635951.1|3.4e-7796.8PREDICTED: ubiquitin-NEDD8-lik... [more]
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BLAST of Spo11952.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RZI4_SPIOL3.0e-80100.Uncharacterized protein OS=Spi... [more]
A0A0D3BRQ7_BRAOL2.4e-7796.8Uncharacterized protein OS=Bra... [more]
A0A078GZ20_BRANA2.4e-7798.7BnaA05g08370D protein OS=Brass... [more]
A0A078D4X0_BRANA2.4e-7798.7BnaC04g09440D protein OS=Brass... [more]
A0A0K9RBV6_SPIOL3.1e-7798.0Uncharacterized protein OS=Spi... [more]
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BLAST of Spo11952.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RUB1_ORYSJ1.8e-7899.3Ubiquitin-NEDD8-like protein R... [more]
RUB2_ORYSJ1.8e-7899.3Ubiquitin-NEDD8-like protein R... [more]
RUB1_ARATH1.8e-7899.3Ubiquitin-NEDD8-like protein R... [more]
RUB1_DESAN2.3e-7898.6Ubiquitin-NEDD8-like protein R... [more]
RUB2_ARATH1.5e-7798.6Ubiquitin-NEDD8-like protein R... [more]
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BLAST of Spo11952.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT1G31340.11.0e-7999.3related to ubiquitin 1[more]
AT2G35635.18.6e-7998.6ubiquitin 7[more]
AT5G03240.11.6e-6480.3polyubiquitin 3[more]
AT5G20620.11.6e-6480.3ubiquitin 4[more]
AT4G05050.12.1e-6480.9ubiquitin 11[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 3..74
score: 3.7E-34coord: 79..150
score: 9.0
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 77..148
score: 2.8E-27coord: 1..72
score: 3.0
IPR000626Ubiquitin domainPROFILEPS50053UBIQUITIN_2coord: 1..76
score: 30.452coord: 77..152
score: 26
IPR019954Ubiquitin conserved sitePROSITEPS00299UBIQUITIN_1coord: 27..52
score: -coord: 103..128
scor
IPR019956UbiquitinPRINTSPR00348UBIQUITINcoord: 11..31
score: 6.1E-39coord: 53..74
score: 6.1E-39coord: 32..52
score: 6.1
NoneNo IPR availableGENE3D3.10.20.90coord: 1..79
score: 1.3E-50coord: 80..152
score: 1.1
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 1..152
score: 1.4E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0055085 transmembrane transport
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0006364 rRNA processing
biological_process GO:0009561 megagametogenesis
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0009944 polarity specification of adaxial/abaxial axis
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0006886 intracellular protein transport
biological_process GO:0010014 meristem initiation
biological_process GO:0006913 nucleocytoplasmic transport
cellular_component GO:0016471 vacuolar proton-transporting V-type ATPase complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0016020 membrane
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0005829 cytosol
cellular_component GO:0005840 ribosome
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005634 nucleus
cellular_component GO:0009507 chloroplast
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0031072 heat shock protein binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
RNA-Seq Expression