Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCATTTGATTGTTGGGTCTGTCTGTTTAGCATAGGCATTGTTGCAGAGTGTGAGAGAGAGAGTCGACTGTTCATCATGGTACTTCCATCAAAGAAGTTCAGAGGCGTCAGGCAACGCCAGTGGGGCTCTTGGGTTTCTGAAATCCGCCACCCTTTATTGTAAGTTACTCCGTACTCCTTACCTATATATACCCCGTAACATGTCATTTTTTTTTGTCACAATTTTAATTAAAGGTTCAATTTTGGATAAATTAGTGGTAATTATATATGTAAAAAATGGTTTTGTACCACCAATGTAGGAAGAAGAGGGTGTGGCTAGGAACATTCGAGACGGCAGAGGAAGCAGCAAAGGCATATGATCAAGCAGCAATACTAATGAATGGTCAAAATGCAAAGACTAATTTCCCAAGAGAGAAGCACAATTCATCAAATAGTAATGGTACAAATGGGCAACAAACAACTCCATTTAACTCAGCATTATCAGAGATACTTAGTGCTAAGCTTAAAAAGTATTGCAAGGATCCTTCTCCTTCACTCACTTGTCTTCGACTCGACACCGATAACTCCCACATTGGTGTGTGGCAAAAGAGAGCCGGAAGTTGCCCAAGCTCCAGTTGGGTTATGCGGGTTGAACTTGGTAAATCTGCGATAGTTAATTCAAAGCAAACTACTACTAATACTAATACTAATACTAATACTAATACTAATACTAATACGAGTGTCTTGTCTGATAATGATGGTTCACCATTATCATCCCCCTCTTCGAATTCGACCTCGTCCTCGGTTTTAGAGGCAGGAGGAGGAGGAGGAGGAGGAGGTGATATGAGTGAAGAAGATAAAGCTGCGTTACAAATGATCGAAGAACTCCTCAACTGGAATCCCCCTGCCTCTTCATTAGCTTGATCAAACTACTAACGATGATCATTGCGATTTCATTAGTACCTACAGAATTGAAGCTAAGTACTACCTCCGTTTCAGAATGTTCTTTCATGTATAGAACGCAAAGCAGTATATGGCTAGTTTAAAACTATGGATTAACGTACAACATAGTTTTAATGTCTATACAATTATATATATATACCGAGTATAAATATGTAATGTTAGTTTTAAAAGACTGGTTATATAAATATAATGTCATAAATTAGTACGGAGTAAATGACTAAGGTATACGGAGTATAGTATAAAGTAGTGTGACATTCCAAATGAATATGAAATACGGAGTATGTACATATATATTCTATGAATTTCAAATAAAATATATATATATATTTGTAGTTATATATTCCTAATTCATGTCTTTATTGGTAGCTTCAGTACCCAATACTAAAATTCTGATGCATCAATTTTGTACATTTTGTATCTTTATATTCTTCGGAATTACTGTACAATGGTCTTTCATATCTACATAGTATGGAATAGTATTTT CTCATTTGATTGTTGGGTCTGTCTGTTTAGCATAGGCATTGTTGCAGAGTGTGAGAGAGAGAGTCGACTGTTCATCATGGTACTTCCATCAAAGAAGTTCAGAGGCGTCAGGCAACGCCAGTGGGGCTCTTGGGTTTCTGAAATCCGCCACCCTTTATTGAAGAAGAGGGTGTGGCTAGGAACATTCGAGACGGCAGAGGAAGCAGCAAAGGCATATGATCAAGCAGCAATACTAATGAATGGTCAAAATGCAAAGACTAATTTCCCAAGAGAGAAGCACAATTCATCAAATAGTAATGGTACAAATGGGCAACAAACAACTCCATTTAACTCAGCATTATCAGAGATACTTAGTGCTAAGCTTAAAAAGTATTGCAAGGATCCTTCTCCTTCACTCACTTGTCTTCGACTCGACACCGATAACTCCCACATTGGTGTGTGGCAAAAGAGAGCCGGAAGTTGCCCAAGCTCCAGTTGGGTTATGCGGGTTGAACTTGGTAAATCTGCGATAGTTAATTCAAAGCAAACTACTACTAATACTAATACTAATACTAATACTAATACTAATACTAATACGAGTGTCTTGTCTGATAATGATGGTTCACCATTATCATCCCCCTCTTCGAATTCGACCTCGTCCTCGGTTTTAGAGGCAGGAGGAGGAGGAGGAGGAGGAGGTGATATGAGTGAAGAAGATAAAGCTGCGTTACAAATGATCGAAGAACTCCTCAACTGGAATCCCCCTGCCTCTTCATTAGCTTGATCAAACTACTAACGATGATCATTGCGATTTCATTAGTACCTACAGAATTGAAGCTAAGTACTACCTCCGTTTCAGAATGTTCTTTCATGTATAGAACGCAAAGCAGTATATGGCTAGTTTAAAACTATGGATTAACGTACAACATAGTTTTAATGTCTATACAATTATATATATATACCGAGTATAAATATGTAATGTTAGTTTTAAAAGACTGGTTATATAAATATAATGTCATAAATTAGTACGGAGTAAATGACTAAGGTATACGGAGTATAGTATAAAGTAGTGTGACATTCCAAATGAATATGAAATACGGAGTATGTACATATATATTCTATGAATTTCAAATAAAATATATATATATATTTGTAGTTATATATTCCTAATTCATGTCTTTATTGGTAGCTTCAGTACCCAATACTAAAATTCTGATGCATCAATTTTGTACATTTTGTATCTTTATATTCTTCGGAATTACTGTACAATGGTCTTTCATATCTACATAGTATGGAATAGTATTTT ATGGTACTTCCATCAAAGAAGTTCAGAGGCGTCAGGCAACGCCAGTGGGGCTCTTGGGTTTCTGAAATCCGCCACCCTTTATTGAAGAAGAGGGTGTGGCTAGGAACATTCGAGACGGCAGAGGAAGCAGCAAAGGCATATGATCAAGCAGCAATACTAATGAATGGTCAAAATGCAAAGACTAATTTCCCAAGAGAGAAGCACAATTCATCAAATAGTAATGGTACAAATGGGCAACAAACAACTCCATTTAACTCAGCATTATCAGAGATACTTAGTGCTAAGCTTAAAAAGTATTGCAAGGATCCTTCTCCTTCACTCACTTGTCTTCGACTCGACACCGATAACTCCCACATTGGTGTGTGGCAAAAGAGAGCCGGAAGTTGCCCAAGCTCCAGTTGGGTTATGCGGGTTGAACTTGGTAAATCTGCGATAGTTAATTCAAAGCAAACTACTACTAATACTAATACTAATACTAATACTAATACTAATACTAATACGAGTGTCTTGTCTGATAATGATGGTTCACCATTATCATCCCCCTCTTCGAATTCGACCTCGTCCTCGGTTTTAGAGGCAGGAGGAGGAGGAGGAGGAGGAGGTGATATGAGTGAAGAAGATAAAGCTGCGTTACAAATGATCGAAGAACTCCTCAACTGGAATCCCCCTGCCTCTTCATTAGCTTGA MVLPSKKFRGVRQRQWGSWVSEIRHPLLKKRVWLGTFETAEEAAKAYDQAAILMNGQNAKTNFPREKHNSSNSNGTNGQQTTPFNSALSEILSAKLKKYCKDPSPSLTCLRLDTDNSHIGVWQKRAGSCPSSSWVMRVELGKSAIVNSKQTTTNTNTNTNTNTNTNTSVLSDNDGSPLSSPSSNSTSSSVLEAGGGGGGGGDMSEEDKAALQMIEELLNWNPPASSLA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo11619.1 vs. NCBI nr
Match: gi|902124200|gb|KNA04034.1| (hypothetical protein SOVF_203440, partial [Spinacia oleracea]) HSP 1 Score: 425.6 bits (1093), Expect = 5.300e-116 Identity = 225/228 (98.68%), Postives = 225/228 (98.68%), Query Frame = 1
BLAST of Spo11619.1 vs. NCBI nr
Match: gi|731316632|ref|XP_010696316.1| (PREDICTED: ethylene-responsive transcription factor WIN1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 327.0 bits (837), Expect = 2.600e-86 Identity = 178/233 (76.39%), Postives = 191/233 (81.97%), Query Frame = 1
BLAST of Spo11619.1 vs. NCBI nr
Match: gi|645225241|ref|XP_008219492.1| (PREDICTED: ethylene-responsive transcription factor SHINE 2-like [Prunus mume]) HSP 1 Score: 235.7 bits (600), Expect = 7.900e-59 Identity = 137/233 (58.80%), Postives = 164/233 (70.39%), Query Frame = 1
BLAST of Spo11619.1 vs. NCBI nr
Match: gi|596243861|ref|XP_007224520.1| (hypothetical protein PRUPE_ppa023908mg [Prunus persica]) HSP 1 Score: 235.7 bits (600), Expect = 7.900e-59 Identity = 138/233 (59.23%), Postives = 162/233 (69.53%), Query Frame = 1
BLAST of Spo11619.1 vs. NCBI nr
Match: gi|694330033|ref|XP_009355735.1| (PREDICTED: ethylene-responsive transcription factor SHINE 2-like [Pyrus x bretschneideri]) HSP 1 Score: 235.7 bits (600), Expect = 7.900e-59 Identity = 137/227 (60.35%), Postives = 161/227 (70.93%), Query Frame = 1
BLAST of Spo11619.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q9V0_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_203440 PE=4 SV=1) HSP 1 Score: 425.6 bits (1093), Expect = 3.700e-116 Identity = 225/228 (98.68%), Postives = 225/228 (98.68%), Query Frame = 1
BLAST of Spo11619.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D445_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g030370 PE=4 SV=1) HSP 1 Score: 327.0 bits (837), Expect = 1.800e-86 Identity = 178/233 (76.39%), Postives = 191/233 (81.97%), Query Frame = 1
BLAST of Spo11619.1 vs. UniProtKB/TrEMBL
Match: M5XID7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023908mg PE=4 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 5.500e-59 Identity = 138/233 (59.23%), Postives = 162/233 (69.53%), Query Frame = 1
BLAST of Spo11619.1 vs. UniProtKB/TrEMBL
Match: A0A067FE73_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028913mg PE=4 SV=1) HSP 1 Score: 229.9 bits (585), Expect = 3.000e-57 Identity = 132/226 (58.41%), Postives = 150/226 (66.37%), Query Frame = 1
BLAST of Spo11619.1 vs. UniProtKB/TrEMBL
Match: V4TT10_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009526mg PE=4 SV=1) HSP 1 Score: 229.9 bits (585), Expect = 3.000e-57 Identity = 132/226 (58.41%), Postives = 150/226 (66.37%), Query Frame = 1
BLAST of Spo11619.1 vs. ExPASy Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1) HSP 1 Score: 204.9 bits (520), Expect = 9.300e-52 Identity = 119/227 (52.42%), Postives = 149/227 (65.64%), Query Frame = 1
BLAST of Spo11619.1 vs. ExPASy Swiss-Prot
Match: SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2 PE=2 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 2.300e-50 Identity = 116/219 (52.97%), Postives = 141/219 (64.38%), Query Frame = 1
BLAST of Spo11619.1 vs. ExPASy Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 8.700e-50 Identity = 100/137 (72.99%), Postives = 113/137 (82.48%), Query Frame = 1
BLAST of Spo11619.1 vs. ExPASy Swiss-Prot
Match: ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 3.400e-22 Identity = 58/98 (59.18%), Postives = 67/98 (68.37%), Query Frame = 1
BLAST of Spo11619.1 vs. ExPASy Swiss-Prot
Match: PZ02_LUPPO (Protein PPLZ02 OS=Lupinus polyphyllus GN=PPLZ02 PE=2 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 6.100e-19 Identity = 50/98 (51.02%), Postives = 65/98 (66.33%), Query Frame = 1
BLAST of Spo11619.1 vs. TAIR (Arabidopsis)
Match: AT1G15360.1 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 204.9 bits (520), Expect = 5.200e-53 Identity = 119/227 (52.42%), Postives = 149/227 (65.64%), Query Frame = 1
BLAST of Spo11619.1 vs. TAIR (Arabidopsis)
Match: AT5G11190.1 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 200.3 bits (508), Expect = 1.300e-51 Identity = 116/219 (52.97%), Postives = 141/219 (64.38%), Query Frame = 1
BLAST of Spo11619.1 vs. TAIR (Arabidopsis)
Match: AT5G25390.2 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 198.4 bits (503), Expect = 4.900e-51 Identity = 100/137 (72.99%), Postives = 113/137 (82.48%), Query Frame = 1
BLAST of Spo11619.1 vs. TAIR (Arabidopsis)
Match: AT5G25190.1 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 106.7 bits (265), Expect = 1.900e-23 Identity = 58/98 (59.18%), Postives = 67/98 (68.37%), Query Frame = 1
BLAST of Spo11619.1 vs. TAIR (Arabidopsis)
Match: AT1G78080.1 (related to AP2 4) HSP 1 Score: 94.4 bits (233), Expect = 1.000e-19 Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo11619.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo11619.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo11619.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo11619.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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