Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGATAAAGAGCCTACTCCAGAAATCACTGCTCCGGATATTAAAGTTAGATTTGTTAATGATAATGTCTTAATCACAATTGTTCATGAGATACCACATGGTCTTGTTACCAAAATTATGAGAGAGATTTCAAATCTCCATCTATTCATTGCCAACATGAATTCTATGCCAATAGGCAACATTTCTCAAGTATCCATTGTCGCTGAGGTAAGCCCAAAGCCCTATTAATCTTTTCTTTTTTTTAAAAAAAAAAATAAGCCTATTAGTATTCTGTTAATGATAACTAATGTTTGGTTTTGGATTCTCTAGAGTTCTAAAATAACTCTACAAGGTAGAGTTTGAGCATATCAACCATTAAATGAAAAATCAATTGTTAATGTTTATGTACGCGTGGCATTCATATTTTAGTTCAATGCATACTTGCTTAGATAAATGGAAAGATATTATATACTCCGTATTTTGTTTGAAATGATCTTTTTCAAATTTAACATGTTAGTAAAGGATCAAAGATCTCAAACATTCCCTTATCGATTAGAGATTTAAAATCTTTATTCTTAAGTTCAAATTCAAGCAGATCTAATAATTTACCACATATATTTTGGTCAATTACTTGCAGATGGAATCAGATTTTAAGACGAGTCAAGAGGATTTGGAGAGCAATCTTCATTCGATTTTCCTTTGATTAGATTTGTGGTCTGAGGTTTTGTTTGTTCAAAGACTTTCCGACTTATGCCGTGGGAAGTGATAAATCCAGGAAAAATTTTACTTCTTCAAAGAAAATCCACATTTTTTTAAAGTTTATTTCTTTGGAAAAGTGAAAATTTTCCTTGAATTTATGATTTCCCGTATGTCGTCGCCACACCCAAATTTCGAATTGTTTTTGTTTTTATTTTTATTTTACATGTTTGAATAATTCTTGAACTTTTATTTGATGCTATTATGAATGAAAGTAATCTTCTTAATGAGAATAATGATTGGCGTGACCGCGTGAGTAATTAAGTGTTAGTTTCACAGAGTTCCTCAAGAGGGGGGGTGAATTGATATTTTACGGTTTTACAAAAATTAAACTACTAGGAACAGAAACAGTAAAATATGCAAGCGAGATTTAGCGTGGAAAACTCTCTAGGCCCAATAGAGAGGAAAAAACCACGGCCCCTTTGGGGACTTAAACACATTCACTAATTAGGCAAAACAACTCAGTTTCTTTACAAGCCTAATCTACTCGGGCCACAATCTGTTAGTCGCCTCTGACTACAGATGACCAGGAACAACCCCTCGTTGTTCCTTCCCTTACAGAAACAGTCCCTCAACTGCTTCTCCTCACAGATCTCTCGTGAGATCTTCTCTCTTGCTCAAGTAAGCCTGACTCAGGCTTATCATACAATATCTCAACACTTTAGACTGAAAGTAATATTAAACTTAATACTAAAT ATGGATGATAAAGAGCCTACTCCAGAAATCACTGCTCCGGATATTAAAGTTAGATTTGTTAATGATAATGTCTTAATCACAATTGTTCATGAGATACCACATGGTCTTGTTACCAAAATTATGAGAGAGATTTCAAATCTCCATCTATTCATTGCCAACATGAATTCTATGCCAATAGGCAACATTTCTCAAGTATCCATTGTCGCTGAGATGGAATCAGATTTTAAGACGAGTCAAGAGGATTTGGAGAGCAATCTTCATTCGATTTTCCTTTGATTAGATTTGTGGTCTGAGGTTTTGTTTGTTCAAAGACTTTCCGACTTATGCCGTGGGAAGTGATAAATCCAGGAAAAATTTTACTTCTTCAAAGAAAATCCACATTTTTTTAAAGTTTATTTCTTTGGAAAAGTGAAAATTTTCCTTGAATTTATGATTTCCCGTATGTCGTCGCCACACCCAAATTTCGAATTGTTTTTGTTTTTATTTTTATTTTACATGTTTGAATAATTCTTGAACTTTTATTTGATGCTATTATGAATGAAAGTAATCTTCTTAATGAGAATAATGATTGGCGTGACCGCGTGAGTAATTAAGTGTTAGTTTCACAGAGTTCCTCAAGAGGGGGGGTGAATTGATATTTTACGGTTTTACAAAAATTAAACTACTAGGAACAGAAACAGTAAAATATGCAAGCGAGATTTAGCGTGGAAAACTCTCTAGGCCCAATAGAGAGGAAAAAACCACGGCCCCTTTGGGGACTTAAACACATTCACTAATTAGGCAAAACAACTCAGTTTCTTTACAAGCCTAATCTACTCGGGCCACAATCTGTTAGTCGCCTCTGACTACAGATGACCAGGAACAACCCCTCGTTGTTCCTTCCCTTACAGAAACAGTCCCTCAACTGCTTCTCCTCACAGATCTCTCGTGAGATCTTCTCTCTTGCTCAAGTAAGCCTGACTCAGGCTTATCATACAATATCTCAACACTTTAGACTGAAAGTAATATTAAACTTAATACTAAAT ATGGATGATAAAGAGCCTACTCCAGAAATCACTGCTCCGGATATTAAAGTTAGATTTGTTAATGATAATGTCTTAATCACAATTGTTCATGAGATACCACATGGTCTTGTTACCAAAATTATGAGAGAGATTTCAAATCTCCATCTATTCATTGCCAACATGAATTCTATGCCAATAGGCAACATTTCTCAAGTATCCATTGTCGCTGAGATGGAATCAGATTTTAAGACGAGTCAAGAGGATTTGGAGAGCAATCTTCATTCGATTTTCCTTTGA MDDKEPTPEITAPDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNSMPIGNISQVSIVAEMESDFKTSQEDLESNLHSIFL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo11612.1 vs. NCBI nr
Match: gi|902048781|gb|KNA02847.1| (hypothetical protein SOVF_214780 [Spinacia oleracea]) HSP 1 Score: 138.3 bits (347), Expect = 6.800e-30 Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1
BLAST of Spo11612.1 vs. NCBI nr
Match: gi|731343796|ref|XP_010683071.1| (PREDICTED: transcription factor bHLH25-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 66.2 bits (160), Expect = 3.300e-8 Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 1
BLAST of Spo11612.1 vs. NCBI nr
Match: gi|870855236|gb|KMT06969.1| (hypothetical protein BVRB_6g153030 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 66.2 bits (160), Expect = 3.300e-8 Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 1
BLAST of Spo11612.1 vs. NCBI nr
Match: gi|870857100|gb|KMT08676.1| (hypothetical protein BVRB_6g139520 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 64.7 bits (156), Expect = 9.600e-8 Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 1
BLAST of Spo11612.1 vs. NCBI nr
Match: gi|593792300|ref|XP_007159189.1| (hypothetical protein PHAVU_002G216700g [Phaseolus vulgaris]) HSP 1 Score: 59.3 bits (142), Expect = 4.000e-6 Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1
BLAST of Spo11612.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q6W6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_214780 PE=4 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 4.700e-30 Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1
BLAST of Spo11612.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C409_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g153030 PE=4 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 2.300e-8 Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 1
BLAST of Spo11612.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EZL5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g139520 PE=4 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 6.700e-8 Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 1
BLAST of Spo11612.1 vs. UniProtKB/TrEMBL
Match: V7CPC4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G216700g PE=4 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 2.800e-6 Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1
BLAST of Spo11612.1 vs. UniProtKB/TrEMBL
Match: A0A0S3QZU5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G141300 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 8.100e-6 Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 1
BLAST of Spo11612.1 vs. ExPASy Swiss-Prot
Match: BH025_ARATH (Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2) HSP 1 Score: 55.5 bits (132), Expect = 3.600e-7 Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 1
BLAST of Spo11612.1 vs. ExPASy Swiss-Prot
Match: BH018_ARATH (Transcription factor bHLH18 OS=Arabidopsis thaliana GN=BHLH18 PE=2 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 6.900e-6 Identity = 31/74 (41.89%), Postives = 42/74 (56.76%), Query Frame = 1
BLAST of Spo11612.1 vs. TAIR (Arabidopsis)
Match: AT4G37850.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 55.5 bits (132), Expect = 2.000e-8 Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 1
BLAST of Spo11612.1 vs. TAIR (Arabidopsis)
Match: AT2G22750.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 51.2 bits (121), Expect = 3.900e-7 Identity = 31/74 (41.89%), Postives = 42/74 (56.76%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo11612.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo11612.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo11612.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 2
BLAST of Spo11612.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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