Spo11612 (gene)

Overview
NameSpo11612
Typegene
OrganismSpinacia oleracea (Spinach)
Descriptionbasic helix-loop-helix (bHLH) DNA-binding superfamily protein
Locationchr6 : 39734787 .. 39736220 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATAAAGAGCCTACTCCAGAAATCACTGCTCCGGATATTAAAGTTAGATTTGTTAATGATAATGTCTTAATCACAATTGTTCATGAGATACCACATGGTCTTGTTACCAAAATTATGAGAGAGATTTCAAATCTCCATCTATTCATTGCCAACATGAATTCTATGCCAATAGGCAACATTTCTCAAGTATCCATTGTCGCTGAGGTAAGCCCAAAGCCCTATTAATCTTTTCTTTTTTTTAAAAAAAAAAATAAGCCTATTAGTATTCTGTTAATGATAACTAATGTTTGGTTTTGGATTCTCTAGAGTTCTAAAATAACTCTACAAGGTAGAGTTTGAGCATATCAACCATTAAATGAAAAATCAATTGTTAATGTTTATGTACGCGTGGCATTCATATTTTAGTTCAATGCATACTTGCTTAGATAAATGGAAAGATATTATATACTCCGTATTTTGTTTGAAATGATCTTTTTCAAATTTAACATGTTAGTAAAGGATCAAAGATCTCAAACATTCCCTTATCGATTAGAGATTTAAAATCTTTATTCTTAAGTTCAAATTCAAGCAGATCTAATAATTTACCACATATATTTTGGTCAATTACTTGCAGATGGAATCAGATTTTAAGACGAGTCAAGAGGATTTGGAGAGCAATCTTCATTCGATTTTCCTTTGATTAGATTTGTGGTCTGAGGTTTTGTTTGTTCAAAGACTTTCCGACTTATGCCGTGGGAAGTGATAAATCCAGGAAAAATTTTACTTCTTCAAAGAAAATCCACATTTTTTTAAAGTTTATTTCTTTGGAAAAGTGAAAATTTTCCTTGAATTTATGATTTCCCGTATGTCGTCGCCACACCCAAATTTCGAATTGTTTTTGTTTTTATTTTTATTTTACATGTTTGAATAATTCTTGAACTTTTATTTGATGCTATTATGAATGAAAGTAATCTTCTTAATGAGAATAATGATTGGCGTGACCGCGTGAGTAATTAAGTGTTAGTTTCACAGAGTTCCTCAAGAGGGGGGGTGAATTGATATTTTACGGTTTTACAAAAATTAAACTACTAGGAACAGAAACAGTAAAATATGCAAGCGAGATTTAGCGTGGAAAACTCTCTAGGCCCAATAGAGAGGAAAAAACCACGGCCCCTTTGGGGACTTAAACACATTCACTAATTAGGCAAAACAACTCAGTTTCTTTACAAGCCTAATCTACTCGGGCCACAATCTGTTAGTCGCCTCTGACTACAGATGACCAGGAACAACCCCTCGTTGTTCCTTCCCTTACAGAAACAGTCCCTCAACTGCTTCTCCTCACAGATCTCTCGTGAGATCTTCTCTCTTGCTCAAGTAAGCCTGACTCAGGCTTATCATACAATATCTCAACACTTTAGACTGAAAGTAATATTAAACTTAATACTAAAT

mRNA sequence

ATGGATGATAAAGAGCCTACTCCAGAAATCACTGCTCCGGATATTAAAGTTAGATTTGTTAATGATAATGTCTTAATCACAATTGTTCATGAGATACCACATGGTCTTGTTACCAAAATTATGAGAGAGATTTCAAATCTCCATCTATTCATTGCCAACATGAATTCTATGCCAATAGGCAACATTTCTCAAGTATCCATTGTCGCTGAGATGGAATCAGATTTTAAGACGAGTCAAGAGGATTTGGAGAGCAATCTTCATTCGATTTTCCTTTGATTAGATTTGTGGTCTGAGGTTTTGTTTGTTCAAAGACTTTCCGACTTATGCCGTGGGAAGTGATAAATCCAGGAAAAATTTTACTTCTTCAAAGAAAATCCACATTTTTTTAAAGTTTATTTCTTTGGAAAAGTGAAAATTTTCCTTGAATTTATGATTTCCCGTATGTCGTCGCCACACCCAAATTTCGAATTGTTTTTGTTTTTATTTTTATTTTACATGTTTGAATAATTCTTGAACTTTTATTTGATGCTATTATGAATGAAAGTAATCTTCTTAATGAGAATAATGATTGGCGTGACCGCGTGAGTAATTAAGTGTTAGTTTCACAGAGTTCCTCAAGAGGGGGGGTGAATTGATATTTTACGGTTTTACAAAAATTAAACTACTAGGAACAGAAACAGTAAAATATGCAAGCGAGATTTAGCGTGGAAAACTCTCTAGGCCCAATAGAGAGGAAAAAACCACGGCCCCTTTGGGGACTTAAACACATTCACTAATTAGGCAAAACAACTCAGTTTCTTTACAAGCCTAATCTACTCGGGCCACAATCTGTTAGTCGCCTCTGACTACAGATGACCAGGAACAACCCCTCGTTGTTCCTTCCCTTACAGAAACAGTCCCTCAACTGCTTCTCCTCACAGATCTCTCGTGAGATCTTCTCTCTTGCTCAAGTAAGCCTGACTCAGGCTTATCATACAATATCTCAACACTTTAGACTGAAAGTAATATTAAACTTAATACTAAAT

Coding sequence (CDS)

ATGGATGATAAAGAGCCTACTCCAGAAATCACTGCTCCGGATATTAAAGTTAGATTTGTTAATGATAATGTCTTAATCACAATTGTTCATGAGATACCACATGGTCTTGTTACCAAAATTATGAGAGAGATTTCAAATCTCCATCTATTCATTGCCAACATGAATTCTATGCCAATAGGCAACATTTCTCAAGTATCCATTGTCGCTGAGATGGAATCAGATTTTAAGACGAGTCAAGAGGATTTGGAGAGCAATCTTCATTCGATTTTCCTTTGA

Protein sequence

MDDKEPTPEITAPDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNSMPIGNISQVSIVAEMESDFKTSQEDLESNLHSIFL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11612.1Spo11612.1mRNA


Homology
BLAST of Spo11612.1 vs. NCBI nr
Match: gi|902048781|gb|KNA02847.1| (hypothetical protein SOVF_214780 [Spinacia oleracea])

HSP 1 Score: 138.3 bits (347), Expect = 6.800e-30
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1

		  

Query: 1  MDDKEPTPEITAPDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNSMPIG 60
          MDDKEPTPEITAPDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNSMPIG
Sbjct: 1  MDDKEPTPEITAPDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNSMPIG 60

Query: 61 NISQVSIVAEM 72
          NISQVSIVAE+
Sbjct: 61 NISQVSIVAEV 71

BLAST of Spo11612.1 vs. NCBI nr
Match: gi|731343796|ref|XP_010683071.1| (PREDICTED: transcription factor bHLH25-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 66.2 bits (160), Expect = 3.300e-8
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 1

		  

Query: 13  PDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNSMPI-GNISQVSIVAEM 72
           PDI+ RF NDNVLI +  E+  G++ KIM E+  L L +   N+MP  G    ++I+ +M
Sbjct: 196 PDIEARFSNDNVLIKVHCEMQKGILIKIMSELEKLQLLVTTTNAMPFNGRTLDITIMTQM 255

Query: 73  ESDFKTSQEDLESNLHSIF 91
           E+DF    +D+  NL SIF
Sbjct: 256 EADFNMRPQDVVQNLRSIF 274

BLAST of Spo11612.1 vs. NCBI nr
Match: gi|870855236|gb|KMT06969.1| (hypothetical protein BVRB_6g153030 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 66.2 bits (160), Expect = 3.300e-8
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 1

		  

Query: 13  PDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNSMPI-GNISQVSIVAEM 72
           PDI+ RF NDNVLI +  E+  G++ KIM E+  L L +   N+MP  G    ++I+ +M
Sbjct: 175 PDIEARFSNDNVLIKVHCEMQKGILIKIMSELEKLQLLVTTTNAMPFNGRTLDITIMTQM 234

Query: 73  ESDFKTSQEDLESNLHSIF 91
           E+DF    +D+  NL SIF
Sbjct: 235 EADFNMRPQDVVQNLRSIF 253

BLAST of Spo11612.1 vs. NCBI nr
Match: gi|870857100|gb|KMT08676.1| (hypothetical protein BVRB_6g139520 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 64.7 bits (156), Expect = 9.600e-8
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 1

		  

Query: 1  MDDKEPTPEITA----PDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNS 60
          MD+ E +  I+     P IK RF N+++LI I      GL+ KI+ EI   HLF++++N+
Sbjct: 1  MDENEISSSISISEQIPAIKARFSNNSILIDIYCHTQKGLLAKIITEIEKRHLFVSDINA 60

Query: 61 MPI-GNISQVSIVAEMESDFKTSQEDLESNLHSIF 91
            I G   Q+ IV++ME  F  SQ+D  ++LHSIF
Sbjct: 61 SSINGGTLQIIIVSQMEPTFNMSQQDFLNDLHSIF 95

BLAST of Spo11612.1 vs. NCBI nr
Match: gi|593792300|ref|XP_007159189.1| (hypothetical protein PHAVU_002G216700g [Phaseolus vulgaris])

HSP 1 Score: 59.3 bits (142), Expect = 4.000e-6
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1

		  

Query: 11  TAPDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNSMPIGNIS-QVSIVA 70
           T P+I  RF   NVLIT+  E   G+V K + EI NLHL + N N+M  G  +  ++I+A
Sbjct: 244 TIPEIAARFCERNVLITVHCEKTKGVVEKTIHEIENLHLKVTNSNAMTFGRCAIDITIIA 303

Query: 71  EMESDFKTSQEDLESNLHSIF 91
           +M+ +F    +D+  NL S F
Sbjct: 304 QMDMEFCMEVKDVVRNLRSAF 324

BLAST of Spo11612.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q6W6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_214780 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.700e-30
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1

		  

Query: 1  MDDKEPTPEITAPDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNSMPIG 60
          MDDKEPTPEITAPDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNSMPIG
Sbjct: 1  MDDKEPTPEITAPDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNSMPIG 60

Query: 61 NISQVSIVAEM 72
          NISQVSIVAE+
Sbjct: 61 NISQVSIVAEV 71

BLAST of Spo11612.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C409_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g153030 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.300e-8
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 1

		  

Query: 13  PDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNSMPI-GNISQVSIVAEM 72
           PDI+ RF NDNVLI +  E+  G++ KIM E+  L L +   N+MP  G    ++I+ +M
Sbjct: 175 PDIEARFSNDNVLIKVHCEMQKGILIKIMSELEKLQLLVTTTNAMPFNGRTLDITIMTQM 234

Query: 73  ESDFKTSQEDLESNLHSIF 91
           E+DF    +D+  NL SIF
Sbjct: 235 EADFNMRPQDVVQNLRSIF 253

BLAST of Spo11612.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EZL5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g139520 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.700e-8
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 1

		  

Query: 1  MDDKEPTPEITA----PDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNS 60
          MD+ E +  I+     P IK RF N+++LI I      GL+ KI+ EI   HLF++++N+
Sbjct: 1  MDENEISSSISISEQIPAIKARFSNNSILIDIYCHTQKGLLAKIITEIEKRHLFVSDINA 60

Query: 61 MPI-GNISQVSIVAEMESDFKTSQEDLESNLHSIF 91
            I G   Q+ IV++ME  F  SQ+D  ++LHSIF
Sbjct: 61 SSINGGTLQIIIVSQMEPTFNMSQQDFLNDLHSIF 95

BLAST of Spo11612.1 vs. UniProtKB/TrEMBL
Match: V7CPC4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G216700g PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.800e-6
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1

		  

Query: 11  TAPDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNSMPIGNIS-QVSIVA 70
           T P+I  RF   NVLIT+  E   G+V K + EI NLHL + N N+M  G  +  ++I+A
Sbjct: 244 TIPEIAARFCERNVLITVHCEKTKGVVEKTIHEIENLHLKVTNSNAMTFGRCAIDITIIA 303

Query: 71  EMESDFKTSQEDLESNLHSIF 91
           +M+ +F    +D+  NL S F
Sbjct: 304 QMDMEFCMEVKDVVRNLRSAF 324

BLAST of Spo11612.1 vs. UniProtKB/TrEMBL
Match: A0A0S3QZU5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G141300 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.100e-6
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 1

		  

Query: 6   PTPEITAPDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNSMPIGNIS-Q 65
           P  E T P+I+ RF   NVLI +  E   G+V K + EI NLHL + N N+M  G  +  
Sbjct: 255 PLFEETIPEIEARFCGRNVLIRVHCEKTKGVVEKTIHEIENLHLKVTNSNAMAFGRCAID 314

Query: 66  VSIVAEMESDFKTSQEDLESNLHSIF 91
           ++++A+M+ +F    +D+  NL S F
Sbjct: 315 MTVIAQMDMEFCMGVKDVVRNLRSAF 340

BLAST of Spo11612.1 vs. ExPASy Swiss-Prot
Match: BH025_ARATH (Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 3.600e-7
Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 1

		  

Query: 9   EITAPDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNSMPIGNISQVSIV 68
           ++  P+I+VRF +++VLI I+ E   G + KIM EI  LH+ I N + +  G    ++I+
Sbjct: 243 DLDLPEIEVRFSDEDVLIKILCEKQKGHLAKIMAEIEKLHILITNSSVLNFGPTLDITII 302

Query: 69  AEMESDFKTSQEDLESNLHS 89
           A+ ESDF  +  D+  +L S
Sbjct: 303 AKKESDFDMTLMDVVKSLRS 322

BLAST of Spo11612.1 vs. ExPASy Swiss-Prot
Match: BH018_ARATH (Transcription factor bHLH18 OS=Arabidopsis thaliana GN=BHLH18 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.900e-6
Identity = 31/74 (41.89%), Postives = 42/74 (56.76%), Query Frame = 1

		  

Query: 13  PDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNSMPIGNISQVSIVAEME 72
           P+I+VR    +VLI I+ E   G V KIM EI  L L I N N +P G    +SI+A+  
Sbjct: 224 PEIEVRVSGKDVLIKILCEKQKGNVIKIMGEIEKLGLSITNSNVLPFGPTFDISIIAQKN 283

Query: 73  SDFKTSQEDLESNL 87
           ++F    ED+  NL
Sbjct: 284 NNFDMKIEDVVKNL 297

BLAST of Spo11612.1 vs. TAIR (Arabidopsis)
Match: AT4G37850.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.000e-8
Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 1

		  

Query: 9   EITAPDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNSMPIGNISQVSIV 68
           ++  P+I+VRF +++VLI I+ E   G + KIM EI  LH+ I N + +  G    ++I+
Sbjct: 243 DLDLPEIEVRFSDEDVLIKILCEKQKGHLAKIMAEIEKLHILITNSSVLNFGPTLDITII 302

Query: 69  AEMESDFKTSQEDLESNLHS 89
           A+ ESDF  +  D+  +L S
Sbjct: 303 AKKESDFDMTLMDVVKSLRS 322

BLAST of Spo11612.1 vs. TAIR (Arabidopsis)
Match: AT2G22750.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 51.2 bits (121), Expect = 3.900e-7
Identity = 31/74 (41.89%), Postives = 42/74 (56.76%), Query Frame = 1

		  

Query: 13  PDIKVRFVNDNVLITIVHEIPHGLVTKIMREISNLHLFIANMNSMPIGNISQVSIVAEME 72
           P+I+VR    +VLI I+ E   G V KIM EI  L L I N N +P G    +SI+A+  
Sbjct: 224 PEIEVRVSGKDVLIKILCEKQKGNVIKIMGEIEKLGLSITNSNVLPFGPTFDISIIAQKN 283

Query: 73  SDFKTSQEDLESNL 87
           ++F    ED+  NL
Sbjct: 284 NNFDMKIEDVVKNL 297

The following BLAST results are available for this feature:
BLAST of Spo11612.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902048781|gb|KNA02847.1|6.8e-3098.5hypothetical protein SOVF_2147... [more]
gi|731343796|ref|XP_010683071.1|3.3e-843.0PREDICTED: transcription facto... [more]
gi|870855236|gb|KMT06969.1|3.3e-843.0hypothetical protein BVRB_6g15... [more]
gi|870857100|gb|KMT08676.1|9.6e-841.0hypothetical protein BVRB_6g13... [more]
gi|593792300|ref|XP_007159189.1|4.0e-640.7hypothetical protein PHAVU_002... [more]
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BLAST of Spo11612.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9Q6W6_SPIOL4.7e-3098.5Uncharacterized protein OS=Spi... [more]
A0A0J8C409_BETVU2.3e-843.0Uncharacterized protein OS=Bet... [more]
A0A0J8EZL5_BETVU6.7e-841.0Uncharacterized protein OS=Bet... [more]
V7CPC4_PHAVU2.8e-640.7Uncharacterized protein OS=Pha... [more]
A0A0S3QZU5_PHAAN8.1e-638.3Uncharacterized protein OS=Vig... [more]
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BLAST of Spo11612.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BH025_ARATH3.6e-737.5Transcription factor bHLH25 OS... [more]
BH018_ARATH6.9e-641.8Transcription factor bHLH18 OS... [more]
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BLAST of Spo11612.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G37850.12.0e-837.5basic helix-loop-helix (bHLH) ... [more]
AT2G22750.23.9e-741.8basic helix-loop-helix (bHLH) ... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11514MYCcoord: 1..90
score: 5.8
NoneNo IPR availablePANTHERPTHR11514:SF48SUBFAMILY NOT NAMEDcoord: 1..90
score: 5.8

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010162 seed dormancy process
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0005524 ATP binding
RNA-Seq Expression