Spo11595 (gene) | SpinachBase

Overview


Name	Spo11595
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Histone H4
Location	chr6 : 39902058 .. 39902369 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGAAGAGGGAAGGGAGGAAAGGGGTTGGGAAAGGGAGGAGCCAAGAGGCACAGGAAGGTTCTCAGGGATAATATCCAGGGTATTACCAAGCCTGCTATTCGTCGTCTTGCTCGTCGTGGTGGTGTGAAGAGGATCAGTGGTTTGATCTATGAAGAAACTCGCGGTGTTCTCAAGATCTTTCTAGAGAATGTGATTAGAGATGCTGTTACCTACACTGAGCACGCTCGCCGTAAGACGGTGACCGCCATGGATGTTGTCTATGCGCTCAAGAGGCAAGGCCGTACTCTATATGGTTTCGGTGGTTAG

mRNA sequence

ATGTCAGGAAGAGGGAAGGGAGGAAAGGGGTTGGGAAAGGGAGGAGCCAAGAGGCACAGGAAGGTTCTCAGGGATAATATCCAGGGTATTACCAAGCCTGCTATTCGTCGTCTTGCTCGTCGTGGTGGTGTGAAGAGGATCAGTGGTTTGATCTATGAAGAAACTCGCGGTGTTCTCAAGATCTTTCTAGAGAATGTGATTAGAGATGCTGTTACCTACACTGAGCACGCTCGCCGTAAGACGGTGACCGCCATGGATGTTGTCTATGCGCTCAAGAGGCAAGGCCGTACTCTATATGGTTTCGGTGGTTAG

Coding sequence (CDS)

ATGTCAGGAAGAGGGAAGGGAGGAAAGGGGTTGGGAAAGGGAGGAGCCAAGAGGCACAGGAAGGTTCTCAGGGATAATATCCAGGGTATTACCAAGCCTGCTATTCGTCGTCTTGCTCGTCGTGGTGGTGTGAAGAGGATCAGTGGTTTGATCTATGAAGAAACTCGCGGTGTTCTCAAGATCTTTCTAGAGAATGTGATTAGAGATGCTGTTACCTACACTGAGCACGCTCGCCGTAAGACGGTGACCGCCATGGATGTTGTCTATGCGCTCAAGAGGCAAGGCCGTACTCTATATGGTTTCGGTGGTTAG

Protein sequence

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11595.1	Spo11595.1	mRNA

Homology

[Close]

BLAST of Spo11595.1 vs. NCBI nr
Match: gi|976922550|gb|KVI06931.1| (Histone core [Cynara cardunculus var. scolymus])

HSP 1 Score: 199.5 bits (506), Expect = 2.800e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 107 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 166

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 167 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 209

[Close]

BLAST of Spo11595.1 vs. NCBI nr
Match: gi|641854208|gb|KDO73016.1| (hypothetical protein CISIN_1g047769mg, partial [Citrus sinensis])

HSP 1 Score: 199.5 bits (506), Expect = 2.800e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 29  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 88

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 89  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 131

[Close]

BLAST of Spo11595.1 vs. NCBI nr
Match: gi|15226944|ref|NP_180441.1| (histone H4 [Arabidopsis thaliana])

HSP 1 Score: 199.5 bits (506), Expect = 2.800e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo11595.1 vs. NCBI nr
Match: gi|960491942|ref|XP_014751185.1| (PREDICTED: uncharacterized protein LOC100841093 [Brachypodium distachyon])

HSP 1 Score: 199.5 bits (506), Expect = 2.800e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo11595.1 vs. NCBI nr
Match: gi|670426610|ref|XP_008653962.1| (PREDICTED: uncharacterized protein LOC103634138 [Zea mays])

HSP 1 Score: 199.5 bits (506), Expect = 2.800e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo11595.1 vs. UniProtKB/TrEMBL
Match: A2WWR4_ORYSI (Histone H4 OS=Oryza sativa subsp. indica GN=OsI_04340 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.000e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo11595.1 vs. UniProtKB/TrEMBL
Match: A9NJR8_PICSI (Histone H4 OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.000e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo11595.1 vs. UniProtKB/TrEMBL
Match: A9PA83_POPTR (Histone H4 OS=Populus trichocarpa GN=POPTR_0005s11740g PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.000e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo11595.1 vs. UniProtKB/TrEMBL
Match: H9MAC8_PINRA (Histone H4 OS=Pinus radiata GN=0_18315_01 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.000e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo11595.1 vs. UniProtKB/TrEMBL
Match: B9MST3_SOYBN (Histone H4 OS=Glycine max GN=GLYMA_02G224100 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.000e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo11595.1 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 199.5 bits (506), Expect = 1.800e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo11595.1 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 199.5 bits (506), Expect = 1.800e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo11595.1 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 1.800e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo11595.1 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 1.800e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo11595.1 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 1.800e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo11595.1 vs. TAIR (Arabidopsis)
Match: AT1G07660.1 (Histone superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 9.900e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo11595.1 vs. TAIR (Arabidopsis)
Match: AT1G07820.1 (Histone superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 9.900e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo11595.1 vs. TAIR (Arabidopsis)
Match: AT2G28740.1 (histone H4)

HSP 1 Score: 199.5 bits (506), Expect = 9.900e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo11595.1 vs. TAIR (Arabidopsis)
Match: AT3G45930.1 (Histone superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 9.900e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Spo11595.1 vs. TAIR (Arabidopsis)
Match: AT3G53730.1 (Histone superfamily protein)

HSP 1 Score: 199.5 bits (506), Expect = 9.900e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

The following BLAST results are available for this feature:

BLAST of Spo11595.1 vs. NCBI nr
BLAST of Spo11595.1 vs. UniProtKB/TrEMBL
BLAST of Spo11595.1 vs. ExPASy Swiss-Prot
BLAST of Spo11595.1 vs. TAIR (Arabidopsis)

BLAST of Spo11595.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|976922550\|gb\|KVI06931.1\|	2.8e-48	100.	Histone core [Cynara carduncul...	[more]
gi\|641854208\|gb\|KDO73016.1\|	2.8e-48	100.	hypothetical protein CISIN_1g0...	[more]
gi\|15226944\|ref\|NP_180441.1\|	2.8e-48	100.	histone H4 [Arabidopsis thalia...	[more]
gi\|960491942\|ref\|XP_014751185.1\|	2.8e-48	100.	PREDICTED: uncharacterized pro...	[more]
gi\|670426610\|ref\|XP_008653962.1\|	2.8e-48	100.	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo11595.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A2WWR4_ORYSI	2.0e-48	100.	Histone H4 OS=Oryza sativa sub...	[more]
A9NJR8_PICSI	2.0e-48	100.	Histone H4 OS=Picea sitchensis...	[more]
A9PA83_POPTR	2.0e-48	100.	Histone H4 OS=Populus trichoca...	[more]
H9MAC8_PINRA	2.0e-48	100.	Histone H4 OS=Pinus radiata GN...	[more]
B9MST3_SOYBN	2.0e-48	100.	Histone H4 OS=Glycine max GN=G...	[more]

BLAST of Spo11595.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
H4_EUCGL	1.8e-50	100.	Histone H4 OS=Eucalyptus globu...	[more]
H4_CHEMJ	1.8e-50	100.	Histone H4 OS=Chelidonium maju...	[more]
H4_ARATH	1.8e-50	100.	Histone H4 OS=Arabidopsis thal...	[more]
H41_WHEAT	1.8e-50	100.	Histone H4 variant TH011 OS=Tr...	[more]
H4_PEA	1.8e-50	100.	Histone H4 OS=Pisum sativum PE...	[more]

BLAST of Spo11595.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT1G07660.1	9.9e-52	100.	Histone superfamily protein	[more]
AT1G07820.1	9.9e-52	100.	Histone superfamily protein	[more]
AT2G28740.1	9.9e-52	100.	histone H4	[more]
AT3G45930.1	9.9e-52	100.	Histone superfamily protein	[more]
AT3G53730.1	9.9e-52	100.	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001951	Histone H4	PRINTS	PR00623	HISTONEH4	coord: 89..100 score: 2.2E-63coord: 5..16 score: 2.2E-63coord: 77..89 score: 2.2E-63coord: 20..39 score: 2.2E-63coord: 40..60 score: 2.2E-63coord: 62..76 score: 2.2
IPR001951	Histone H4	SMART	SM00417	h44	coord: 16..90 score: 2.0
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 2..103 score: 1.8
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 3..102 score: 4.04
IPR019809	Histone H4, conserved site	PROSITE	PS00047	HISTONE_H4	coord: 15..19 scor
None	No IPR available	PANTHER	PTHR10484	HISTONE H4	coord: 1..103 score: 1.1E
None	No IPR available	PFAM	PF15511	CENP-T_C	coord: 35..96 score: 1.

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0010498	proteasomal protein catabolic process
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0006425	glutaminyl-tRNA aminoacylation
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0007010	cytoskeleton organization
biological_process	GO:0006090	pyruvate metabolic process
biological_process	GO:2001295	malonyl-CoA biosynthetic process
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0034968	histone lysine methylation
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0006457	protein folding
biological_process	GO:0048367	shoot system development
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0000338	protein deneddylation
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0001510	RNA methylation
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0016579	protein deubiquitination
biological_process	GO:0048767	root hair elongation
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0006499	N-terminal protein myristoylation
biological_process	GO:0006508	proteolysis
biological_process	GO:0006144	purine nucleobase metabolic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0009343	biotin carboxylase complex
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0008242	omega peptidase activity
molecular_function	GO:0008236	serine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004843	thiol-dependent ubiquitin-specific protease activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0004819	glutamine-tRNA ligase activity
molecular_function	GO:0003989	acetyl-CoA carboxylase activity
molecular_function	GO:0004075	biotin carboxylase activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0000166	nucleotide binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo28289	0.77	Barchart \| Table
Spo15603	0.72	Barchart \| Table
Spo10969	0.71	Barchart \| Table
Spo06681	0.71	Barchart \| Table
Spo00073	0.70	Barchart \| Table
Spo00071	0.70	Barchart \| Table
Spo18269	0.69	Barchart \| Table
Spo04282	0.69	Barchart \| Table
Spo06030	0.69	Barchart \| Table
Spo09819	0.68	Barchart \| Table
Spo07652	0.68	Barchart \| Table
Spo28152	0.68	Barchart \| Table
Spo05455	0.68	Barchart \| Table
Spo25616	0.67	Barchart \| Table
Spo00751	0.67	Barchart \| Table
Spo24594	0.66	Barchart \| Table
Spo16871	0.66	Barchart \| Table
Spo18049	0.66	Barchart \| Table
Spo08905	0.66	Barchart \| Table
Spo23192	0.66	Barchart \| Table
Spo01375	0.65	Barchart \| Table
Spo05849	0.65	Barchart \| Table
Spo11594	0.65	Barchart \| Table
Spo13953	0.65	Barchart \| Table
Spo20917	0.65	Barchart \| Table